Micromonospora zamorensis (DSM 45600, CECT 7892, CR 38)

Name: Micromonospora zamorensis (DSM 45600, CECT 7892, CR 38)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 8022

Type strain

Strain Designation CR 38, CR38

Culture col. no. DSM 45600 CECT 7892 CR 38 JCM 31702 CR38

NCBI tax ID(s) 709883

Special Collections DSMZ JCM Literature strains

History DSMZ <- M. E. Trujillo, Universidad de Salamanca, Spain; CR 38 <- L. Carro JCM <-- CECT 7892 <-- M. E. Trujillo, Univ. Salamanca, Spain; CR38.

Links

Micromonospora zamorensis CR 38 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from rhizosphere of Pisum sativum.

spore-forming Gram-positive aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 382399

CECT 7892,DSM 45600

@ref 20215

Last LPSN update 2026-05-29 08:26:47

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micromonosporales

Family Micromonosporaceae

Genus Micromonospora

Species Micromonospora zamorensis

Full scientific name Micromonospora zamorensis Carro et al. 2012

BacDive ID	Other strains from **Micromonospora zamorensis** (2)	Type strain
176931	M. zamorensis 14/1000/C/27, DSM 43741
176932	M. zamorensis 14/10/G/3A, DSM 43742

Morphology

Cell morphology

@ref	Gram stain	Cell width	Confidence
30559	positive	0.4 µm
125438	positive		92.865
125439			90.995
125439	positive		98.987

Pigmentation

30559

Productionyes

Multimedia

@ref:	17741
multimedia content:	DSM_45600.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_45600.jpg
caption:	Medium 554 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
17741	N-Z-AMINE-MEDIUM (DSMZ Medium 554)	Medium recipe at MediaDive	Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water
17741	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
17741	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
17741	GPHF-MEDIUM (DSMZ Medium 553)	Medium recipe at MediaDive	Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
17741	positive	growth	28
30559	positive	growth	10-37
67770	positive	growth	28

Culture pH

@ref	Ability	Type	PH	PH range
30559	positive	growth	6.5-9	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
30559	aerobe
125439	obligate aerobe	99.522

Spore formation

@ref	Spore formation	Confidence
30559
125438		92.512

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30559	NaCl	positive	growth	3 %

Observation

67770

Observationquinones: MK-10(H₄), MK-10(H₆), MK-9(H₄), MK-10(H₂), MK-10(H₈)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30559	22599 ChEBI	arabinose	+	carbon source
30559	29016 ChEBI	arginine	+	carbon source
30559	28757 ChEBI	fructose	+	carbon source
30559	17234 ChEBI	glucose	+	carbon source
30559	17306 ChEBI	maltose	+	carbon source
30559	37684 ChEBI	mannose	+	carbon source
30559	26271 ChEBI	proline	+	carbon source
30559	16634 ChEBI	raffinose	+	carbon source
30559	17814 ChEBI	salicin	+	carbon source
30559	17822 ChEBI	serine	+	carbon source
30559	17992 ChEBI	sucrose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
30559	acid phosphatase	+	3.1.3.2
30559	alkaline phosphatase	+	3.1.3.1
30559	catalase	+	1.11.1.6
30559	cytochrome oxidase	+	1.9.3.1
30559	gelatinase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
17741	rhizosphere of Pisum sativum	Pisum sativum	Zamora province, Canizal (41° 49' 00'' N 6° 13' 00'' W)	Spain	ESP	Europe	41.8167	-6.2167 41.8167/-6.2167
67770	Rhizosphere of a Pisum sativum plant	Pisum sativum	Zamora	Spain	ESP	Europe

Taxonmaps

69479

Global distribution of 16S sequence FN658656 (>99% sequence identity) for Micromonospora from Microbeatlas

Aquatic Samples	11
Soil Samples	33
Animal Samples	7
Plant Samples	2
Total Samples	53

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17741	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2617270899 annotated assembly for Micromonospora zamorensis DSM 45600	chromosome	GCA_900090275	709883.12	2617270899	709883	87.14

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
17741	Micromonospora zamorensis partial 16S rRNA gene, type strain CR38T	FN658656	1451		709883

GC content

@ref	GC-content (mol%)	Method
17741	71.8	thermal denaturation, midpoint method (Tm)
30559	71.8
67770	71.21	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: IMG-taxon 2617270899 annotated assembly for Micromonospora zamorensis DSM 45600
NCBI: GCA_900090275

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.52	no
125439	gram_stain	BacteriaNetⓘ	positive	98.99	no
125439	motility	BacteriaNetⓘ	no	91.00	no
125439	spore_formation	BacteriaNetⓘ	yes	73.16	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Micromonospora zamorensis strain DSM 45600
PATRIC: 709883.12

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	92.87	yes
125438	anaerobic	anaerobicⓘ	no	95.89	yes
125438	spore-forming	spore-formingⓘ	yes	92.51	yes
125438	aerobic	aerobicⓘ	yes	89.54	yes
125438	thermophilic	thermophileⓘ	no	96.00	yes
125438	flagellated	motile2+ⓘ	no	88.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinoplanes solisilvae sp. nov., Isolated from Birch Forest Soil.	Ma Q, Zhang Q, Jiang X, Kong D, Han X, Xue H, Zhou Y, Zhang Y, Zhang W, Ruan Z	Curr Microbiol	10.1007/s00284-020-02192-z	2020
Phylogeny	Micromonospora cremea sp. nov. and Micromonospora zamorensis sp. nov., isolated from the rhizosphere of Pisum sativum.	Carro L, Pukall R, Sproer C, Kroppenstedt RM, Trujillo ME	Int J Syst Evol Microbiol	10.1099/ijs.0.038695-0	2012

References

#17741	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45600
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26890	IJSEM 2971 2012 ( DOI 10.1099/ijs.0.038695-0 , PubMed 22286910 )
#30559	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26890
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Micromonospora zamorensis (DSM 45600, CECT 7892, CR 38)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900090275

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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