Micromonospora zamorensis CR 38 | Type strain | DSM 45600, CECT 7892, JCM 31702

Caption:

Medium 554 28°C

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

Culture medium

N-Z-AMINE-MEDIUM (DSMZ Medium 554)

Culture medium growth

Culture medium link

Culture medium composition

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

Culture medium growth

Culture medium link

Culture medium composition

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

Culture medium growth

Culture medium link

Culture medium composition

Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

Culture medium growth

Culture medium link

Culture medium composition

What are isolation sources categories?

		Temperature
[Ref.: #17741]	growth	28 °C
[Ref.: #30559]	growth	10-37 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #17741]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30559]			growth	6.5-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30559]

Oxygen tolerance

aerobe

[Ref.: #30559]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30559]		NaCl		growth	3	%

[Ref.: #67770]

Observation

quinones: MK-10(H₄), MK-10(H₆), MK-9(H₄), MK-10(H₂), MK-10(H₈)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30559]	arabinose ChEBI	+	carbon source
[Ref.: #30559]	arginine ChEBI	+	carbon source
[Ref.: #30559]	fructose ChEBI	+	carbon source
[Ref.: #30559]	glucose ChEBI	+	carbon source
[Ref.: #30559]	maltose ChEBI	+	carbon source
[Ref.: #30559]	mannose ChEBI	+	carbon source
[Ref.: #30559]	proline ChEBI	+	carbon source
[Ref.: #30559]	raffinose ChEBI	+	carbon source
[Ref.: #30559]	salicin ChEBI	+	carbon source
[Ref.: #30559]	serine ChEBI	+	carbon source
[Ref.: #30559]	sucrose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #30559]	acid phosphatase	+	3.1.3.2
[Ref.: #30559]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30559]	catalase	+	1.11.1.6
[Ref.: #30559]	cytochrome oxidase	+	1.9.3.1
[Ref.: #30559]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17741]	Sample type/isolated from	rhizosphere of Pisum sativum
[Ref.: #17741]	Host species	Pisum sativum
[Ref.: #17741]	Geographic location (country and/or sea, region)	Zamora province, Canizal (41° 49' 00'' N 6° 13' 00'' W)
[Ref.: #17741]	Country	Spain
[Ref.: #17741]	Country ISO 3 Code	ESP
[Ref.: #17741]	Continent	Europe
[Ref.: #17741]	Geographic location	41.8167°/-6.2167°

[Ref.: #67770]	Sample type/isolated from	Rhizosphere of a Pisum sativum plant
[Ref.: #67770]	Host species	Pisum sativum
[Ref.: #67770]	Geographic location (country and/or sea, region)	Zamora
[Ref.: #67770]	Country	Spain
[Ref.: #67770]	Country ISO 3 Code	ESP
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

[Ref.: #69479]

Global distribution of 16S sequence FN658656 (>99% sequence identity) for Micromonospora from Microbeatlas

Aquatic Samples	11
Soil Samples	33
Animal Samples	7
Plant Samples	2
Total Samples	53

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17741]	Micromonospora zamorensis partial 16S rRNA gene, type strain CR38T	FN658656	1451	ENA	709883 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Micromonospora zamorensis DSM 45600	GCA_900090275	chromosome	GenBank	709883 tax ID	*
[Ref.: #66792]	Micromonospora zamorensis strain DSM 45600	709883.12	complete	PATRIC	709883 tax ID	*
[Ref.: #66792]	Micromonospora zamorensis DSM 45600	2617270899	draft	JGI IMG/M	709883 tax ID	*

[Ref.: #17741]	GC-content	71.8 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #30559]	GC-content	71.8 mol%
[Ref.: #67770]	GC-content	71.21 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Micromonospora zamorensis strain DSM 45600 PATRIC: 709883.12
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Micromonospora zamorensis strain DSM 45600 PATRIC: 709883.12
[Ref.: #69480]	gram-positive	yes	91.721	no
[Ref.: #69480]	anaerobic	no	99.375	yes
[Ref.: #69480]	halophile	no	93.94	no
[Ref.: #69480]	spore-forming	yes	93.167	yes
[Ref.: #69480]	glucose-util	yes	89.027	no
[Ref.: #69480]	thermophile	no	98.973	yes
[Ref.: #69480]	flagellated	no	98.098	yes
[Ref.: #69480]	aerobic	yes	96.14	yes
[Ref.: #69480]	motile	no	91.84	no
[Ref.: #69480]	glucose-ferment	no	91.806	no

Availability in culture collections External links