Micromonospora haikouensis (DSM 45626, CCTCC AA 2011012, JCM 31036)

Name: Micromonospora haikouensis (DSM 45626, CCTCC AA 2011012, JCM 31036)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 8020

Type strain

Strain Designation 232617

Culture col. no. DSM 45626 CCTCC AA 2011012 JCM 31036 232617

NCBI tax ID(s) 686309

Special Collections DSMZ JCM

History <- Q. Xie, Inst. of Tropical Bioscience & Biotech., Haikou City; 232617 DSM 45626 <-- Q. Xie; Inst. of Trop. Biosci. & Biotechnol., China; 232617.

Links

Micromonospora haikouensis 232617 is a mesophilic prokaryote that was isolated from mangrove sediment.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 398274

JCM 31036,DSM 45626

@ref 20215

Last LPSN update 2026-02-09 11:19:36

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micromonosporales

Family Micromonosporaceae

Genus Micromonospora

Species Micromonospora haikouensis

Full scientific name Micromonospora haikouensis corrig. Xie et al. 2012

Synonyms (1)

Micromonospora panzhihuaensis

Morphology

Cell morphology

@ref	Confidence	Gram stain
125438	90.5
125438	90.73	positive
125439	100	positive
125439	93.6

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
17832	N-Z-AMINE-MEDIUM (DSMZ Medium 554)	Medium recipe at MediaDive	Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water
17832	GPHF-MEDIUM (DSMZ Medium 553)	Medium recipe at MediaDive	Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
17832	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
17832	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
17832	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	aerobe	99.2

Spore formation

@ref	Spore formation	Confidence
125438		92.891
125439		95.5

Observation

67770

Observationquinones: MK-10(H₆), MK-10(H₄)

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	cellulose degradation	100	5 of 5
66794	starch degradation	100	10 of 10
66794	formaldehyde oxidation	100	3 of 3
66794	glycine betaine biosynthesis	100	5 of 5
66794	biotin biosynthesis	100	4 of 4
66794	glycolate and glyoxylate degradation	100	6 of 6
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	chorismate metabolism	100	9 of 9
66794	cardiolipin biosynthesis	100	7 of 7
66794	octane oxidation	100	3 of 3
66794	1,4-dihydroxy-6-naphthoate biosynthesis	100	6 of 6
66794	ethanol fermentation	100	2 of 2
66794	threonine metabolism	100	10 of 10
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	CMP-KDO biosynthesis	100	4 of 4
66794	coenzyme A metabolism	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	acetate fermentation	100	4 of 4
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	aerobactin biosynthesis	100	1 of 1
66794	ppGpp biosynthesis	100	4 of 4
66794	suberin monomers biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	adipate degradation	100	2 of 2
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	palmitate biosynthesis	100	22 of 22
66794	phenylmercury acetate degradation	100	2 of 2
66794	sulfopterin metabolism	100	4 of 4
66794	glutathione metabolism	92.86	13 of 14
66794	leucine metabolism	92.31	12 of 13
66794	phenylalanine metabolism	92.31	12 of 13
66794	pentose phosphate pathway	90.91	10 of 11
66794	propionate fermentation	90	9 of 10
66794	Entner Doudoroff pathway	90	9 of 10
66794	valine metabolism	88.89	8 of 9
66794	4-hydroxymandelate degradation	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	isoleucine metabolism	87.5	7 of 8
66794	gluconeogenesis	87.5	7 of 8
66794	dTDPLrhamnose biosynthesis	87.5	7 of 8
66794	peptidoglycan biosynthesis	86.67	13 of 15
66794	photosynthesis	85.71	12 of 14
66794	heme metabolism	85.71	12 of 14
66794	ubiquinone biosynthesis	85.71	6 of 7
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	purine metabolism	85.11	80 of 94
66794	pyrimidine metabolism	84.44	38 of 45
66794	tryptophan metabolism	84.21	32 of 38
66794	NAD metabolism	83.33	15 of 18
66794	glycolysis	82.35	14 of 17
66794	metabolism of disaccharids	81.82	9 of 11
66794	glycogen metabolism	80	4 of 5
66794	3-phenylpropionate degradation	80	12 of 15
66794	flavin biosynthesis	80	12 of 15
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	citric acid cycle	78.57	11 of 14
66794	allantoin degradation	77.78	7 of 9
66794	urea cycle	76.92	10 of 13
66794	alanine metabolism	75.86	22 of 29
66794	degradation of sugar alcohols	75	12 of 16
66794	glutamate and glutamine metabolism	75	21 of 28
66794	glycogen biosynthesis	75	3 of 4
66794	phenol degradation	75	15 of 20
66794	lipid metabolism	74.19	23 of 31
66794	methionine metabolism	73.08	19 of 26
66794	carotenoid biosynthesis	72.73	16 of 22
66794	proline metabolism	72.73	8 of 11
66794	histidine metabolism	72.41	21 of 29
66794	degradation of hexoses	72.22	13 of 18
66794	tyrosine metabolism	71.43	10 of 14
66794	vitamin B12 metabolism	70.59	24 of 34
66794	oxidative phosphorylation	70.33	64 of 91
66794	myo-inositol biosynthesis	70	7 of 10
66794	4-hydroxyphenylacetate degradation	70	7 of 10
66794	vitamin B1 metabolism	69.23	9 of 13
66794	androgen and estrogen metabolism	68.75	11 of 16
66794	non-pathway related	68.42	26 of 38
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	methane metabolism	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	cyanate degradation	66.67	2 of 3
66794	tetrahydrofolate metabolism	64.29	9 of 14
66794	lysine metabolism	64.29	27 of 42
66794	degradation of pentoses	64.29	18 of 28
66794	degradation of sugar acids	64	16 of 25
66794	d-xylose degradation	63.64	7 of 11
66794	ketogluconate metabolism	62.5	5 of 8
66794	arginine metabolism	62.5	15 of 24
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	phosphatidylethanolamine bioynthesis	61.54	8 of 13
66794	cysteine metabolism	61.11	11 of 18
66794	factor 420 biosynthesis	60	3 of 5
66794	arachidonate biosynthesis	60	3 of 5
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	hydrogen production	60	3 of 5
66794	lipoate biosynthesis	60	3 of 5
66794	glycine metabolism	60	6 of 10
66794	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
66794	aclacinomycin biosynthesis	57.14	4 of 7
66794	propanol degradation	57.14	4 of 7
66794	nitrate assimilation	55.56	5 of 9
66794	sulfate reduction	53.85	7 of 13
66794	polyamine pathway	52.17	12 of 23
66794	pantothenate biosynthesis	50	3 of 6
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	coenzyme M biosynthesis	50	5 of 10
66794	toluene degradation	50	2 of 4
66794	ribulose monophosphate pathway	50	1 of 2
66794	cyclohexanol degradation	50	2 of 4
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	lactate fermentation	50	2 of 4
66794	ascorbate metabolism	50	11 of 22
66794	butanoate fermentation	50	2 of 4
66794	resorcinol degradation	50	1 of 2
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	50	4 of 8
66794	quinate degradation	50	1 of 2
66794	kanosamine biosynthesis II	50	1 of 2
66794	bile acid biosynthesis, neutral pathway	47.06	8 of 17
66794	lipid A biosynthesis	44.44	4 of 9
66794	3-chlorocatechol degradation	40	2 of 5
66794	D-cycloserine biosynthesis	40	2 of 5
66794	bacilysin biosynthesis	40	2 of 5
66794	gallate degradation	40	2 of 5
66794	vitamin K metabolism	40	2 of 5
66794	arachidonic acid metabolism	38.89	7 of 18
66794	carnitine metabolism	37.5	3 of 8
66794	vitamin B6 metabolism	36.36	4 of 11
66794	cholesterol biosynthesis	36.36	4 of 11
66794	sphingosine metabolism	33.33	2 of 6
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	chlorophyll metabolism	27.78	5 of 18
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	vitamin E metabolism	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4
66794	ginsenoside metabolism	25	4 of 16
66794	daunorubicin biosynthesis	22.22	2 of 9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Mangrove
#Environmental	#Aquatic	#Sediment
#Host	#Plants	#Tree

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
17832	mangrove sediment	Hainan, Haikou	China	CHN	Asia
67770	Mangrove soil in Haikou		China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence GU130129 (>99% sequence identity) for Micromonospora from Microbeatlas

Aquatic Samples	39
Soil Samples	301
Animal Samples	41
Plant Samples	25
Total Samples	406

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17832	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2622736584 annotated assembly for Micromonospora haikouensis DSM 45626	scaffold	GCA_900091595	686309.4	2622736584	686309	55.05

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
17832	Micromonospora haikouensis strain 232617 16S ribosomal RNA gene, partial sequence	GU130129	1481		686309

GC content

@ref	GC-content (mol%)	Method
17832	71.5
67770	73.73	genome sequence analysis
67770	71.5	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Micromonospora haikouensis DSM 45626
NCBI: GCA_900091595

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	95.50	no
125439	motility	BacteriaNetⓘ	no	93.60	no
125439	gram_stain	BacteriaNetⓘ	positive	100.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	99.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Micromonospora haikouensis strain DSM 45626
PATRIC: 686309.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.73	no
125438	anaerobic	anaerobicⓘ	no	89.89	no
125438	spore-forming	spore-formingⓘ	yes	92.89	no
125438	aerobic	aerobicⓘ	yes	85.99	no
125438	thermophilic	thermophileⓘ	no	92.04	yes
125438	flagellated	motile2+ⓘ	no	90.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Biosynthesis and genome mining strategies for purine-derived N-nucleoside antibiotics.	Wu Y, Wu S, Niu X, Yu X, Chen T, Liu G, Zhang W.	Front Microbiol	10.3389/fmicb.2025.1684225	2025
	Advances in Biosynthesis of Natural Products from Marine Microorganisms.	Zhou Q, Hotta K, Deng Y, Yuan R, Quan S, Chen X.	Microorganisms	10.3390/microorganisms9122551	2021
Metabolism	Coordinated Biosynthesis of the Purine Nucleoside Antibiotics Aristeromycin and Coformycin in Actinomycetes.	Xu G, Kong L, Gong R, Xu L, Gao Y, Jiang M, Cai YS, Hong K, Hu Y, Liu P, Deng Z, Price NPJ, Chen W	Appl Environ Microbiol	10.1128/AEM.01860-18	2018
Phylogeny	In Silico Analysis of PKS and NRPS Gene Clusters in Arisostatin- and Kosinostatin-Producers and Description of Micromonospora okii sp. nov.	Komaki H, Ichikawa N, Hosoyama A, Hamada M, Igarashi Y	Antibiotics (Basel)	10.3390/antibiotics10121447	2021
Phylogeny	Micromonospora azadirachtae sp. nov., isolated from roots of Azadirachta indica A. Juss. var. siamensis Valeton.	Kuncharoen N, Kudo T, Ohkuma M, Tanasupawat S	Antonie Van Leeuwenhoek	10.1007/s10482-018-1152-3	2018
Phylogeny	Micromonospora mangrovi sp. nov., isolated from mangrove soil.	Xie QY, Ren J, Li L, Li Y, Deng ZX, Hong K	Antonie Van Leeuwenhoek	10.1007/s10482-015-0641-x	2016
Phylogeny	Micromonospora nickelidurans sp. nov., isolated from soil from a nickel-mining site.	Lin YB, Fan MC, Guo YQ, Di XH, Dong DH, Zhang X, Wei GH	Int J Syst Evol Microbiol	10.1099/ijsem.0.000623	2015
Phylogeny	Micromonospora oryzae sp. nov., isolated from roots of upland rice.	Kittiwongwattana C, Thanaboripat D, Laosinwattana C, Koohakan P, Parinthawong N, Thawai C	Int J Syst Evol Microbiol	10.1099/ijsem.0.000500	2015
Phylogeny	Two new species of the genus Micromonospora: Micromonospora palomenae sp. nov. and Micromonospora harpali sp. nov. isolated from the insects.	Fang B, Liu C, Guan X, Song J, Zhao J, Liu H, Li C, Ning W, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-015-0472-9	2015
Phylogeny	Micromonospora wenchangensis sp. nov., isolated from mangrove soil.	Ren J, Li L, Wei B, Tang YL, Deng ZX, Sun M, Hong K	Int J Syst Evol Microbiol	10.1099/ijs.0.045476-0	2012
Phylogeny	Micromonospora haikouensis sp. nov., isolated from mangrove soil.	Xie QY, Qu Z, Lin HP, Li L, Hong K	Antonie Van Leeuwenhoek	10.1007/s10482-011-9682-y	2012

References

#17832	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45626
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Micromonospora haikouensis (DSM 45626, CCTCC AA 2011012, JCM 31036)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900091595

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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