Name: Micromonospora humi P0402
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 8018

Type strain:

Species: Micromonospora humi

Strain Designation: P0402

Culture col. no.: DSM 45647, JCM 15292, PCU 315, TISTR 1883

Strain history: S. Tanasupawat; Chulalongkorn Univ., Thailand; P0402.

NCBI tax ID(s): 745366 (species)

SI-ID 404173

DSM 45647

Special Collections

Other strains from Micromonospora humi

Section

Micromonospora humi P0402 is a spore-forming, Gram-positive bacterium that was isolated from peat swamp forest soil.

Gram-positive
spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Micromonospora*
	Species	**Micromonospora humi**
	Full Scientific Name (LPSN)	Micromonospora humi Songsumanus et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %92.216

[Ref.: #69415]	Colony color	Dahlia yellow (1033)
[Ref.: #69415]	Cultivation medium used	ISP 3

[Ref.: #69415]	Colony color	Light ivory (1015), yellow orange (2000)
[Ref.: #69415]	Cultivation medium used	ISP 7

[Ref.: #69415]	Colony color	Nut brown (8011), olive brown (8008)
[Ref.: #69415]	Cultivation medium used	ISP 2

[Ref.: #69415]	Colony color	Ochre brown (8001), daffodil yellow (1007)
[Ref.: #69415]	Cultivation medium used	ISP 6

[Ref.: #69415]	Colony color	Ochre brown (8001), fawn brown (8007)
[Ref.: #69415]	Cultivation medium used	suter with tyrosine

[Ref.: #69415]	Colony color	Ochre brown (8001), fawn brown (8007)
[Ref.: #69415]	Cultivation medium used	suter without tyrosine

[Ref.: #69415]	Colony color	Oyster white (1013), yellow orange (2000)
[Ref.: #69415]	Cultivation medium used	ISP 4

[Ref.: #69415]	Colony color	Oyster white (1013), yellow orange (2000)
[Ref.: #69415]	Cultivation medium used	ISP 5

[Ref.: #69415]	Pigment production	no
[Ref.: #69415]	Pigment name	Melanin
[Ref.: #69415]	Pigment production	no
[Ref.: #69415]	Pigment name	soluble pigment

[Ref.: #69415]	Multicellular complex forming ability	no
[Ref.: #69415]	Multicellular complex name	Aerial mycelium
[Ref.: #69415]	Medium Name (multicellularity)	ISP 2

[Ref.: #69415]	Multicellular complex forming ability	no
[Ref.: #69415]	Multicellular complex name	Aerial mycelium
[Ref.: #69415]	Medium Name (multicellularity)	ISP 3

[Ref.: #69415]	Multicellular complex forming ability	no
[Ref.: #69415]	Multicellular complex name	Aerial mycelium
[Ref.: #69415]	Medium Name (multicellularity)	ISP 4

[Ref.: #69415]	Multicellular complex forming ability	no
[Ref.: #69415]	Multicellular complex name	Aerial mycelium
[Ref.: #69415]	Medium Name (multicellularity)	ISP 5

[Ref.: #69415]	Multicellular complex forming ability	no
[Ref.: #69415]	Multicellular complex name	Aerial mycelium
[Ref.: #69415]	Medium Name (multicellularity)	ISP 6

[Ref.: #69415]	Multicellular complex forming ability	no
[Ref.: #69415]	Multicellular complex name	Aerial mycelium
[Ref.: #69415]	Medium Name (multicellularity)	ISP 7

[Ref.: #69415]	Multicellular complex forming ability	no
[Ref.: #69415]	Multicellular complex name	Aerial mycelium
[Ref.: #69415]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69415]	Multicellular complex forming ability	no
[Ref.: #69415]	Multicellular complex name	Aerial mycelium
[Ref.: #69415]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

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Caption:

Plates (554, ISP2, ISP3, ISP4, ISP5, ISP7)

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Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69415]

Caption:

Plates (554, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69415]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17970]

Culture medium

N-Z-AMINE-MEDIUM (DSMZ Medium 554)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #17970]

Culture medium composition

expand / minimize

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #17970]

Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

[Ref.: #17970]

Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

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Culture medium growth

[Ref.: #17970]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #17970]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	yes Confidence in %94.641
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69415]		NaCl		growth	0-2.5	%

[Ref.: #67770]

Observation

quinones: MK-10(H₄), MK-10(H₆)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69415]	arabinose ChEBI	+	growth
[Ref.: #69415]	cellulose ChEBI	+/-	growth
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69415]	fructose ChEBI	+	growth
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #69415]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69415]	inositol ChEBI	+/-	growth
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69415]	mannose ChEBI	+	growth
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #69415]	raffinose ChEBI	+/-	growth
[Ref.: #69415]	rhamnose ChEBI	+/-	growth
[Ref.: #69415]	sucrose ChEBI	+	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69415]	xylose ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	-	3.1.3.1	* from API Coryne
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	+	3.2.1.20	* from API Coryne, API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69415]	3908	-	-	-	-	-	-	+	-	-	-	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69415]	6092	not determinedn.d.	+/-	+/-	+/-	+/-	+	+/-	+/-	+	+	+	-	+	+/-	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17970]	Sample type/isolated from	peat swamp forest soil
[Ref.: #17970]	Geographic location (country and/or sea, region)	Phayao Province, Phu Sang National Park
[Ref.: #17970]	Country	Thailand
[Ref.: #17970]	Country ISO 3 Code	THA
[Ref.: #17970]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Peat swamp forest soil at Phu Sang National Park
[Ref.: #67770]	Geographic location (country and/or sea, region)	Phayao Province
[Ref.: #67770]	Country	Thailand
[Ref.: #67770]	Country ISO 3 Code	THA
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil
#Environmental	#Terrestrial	#Wetland (Swamp)
#Condition	#Acidic	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17970]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17970]	Micromonospora humi strain P0402 16S ribosomal RNA gene, partial sequence	GU459068	1478	GenBank ENA	745366 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Micromonospora humi DSM 45647	GCA_900090105	scaffold	GenBank ENA	745366 tax ID
[Ref.: #66792]	Micromonospora humi strain DSM 45647	745366.4	wgs	PATRIC	745366 tax ID	*
[Ref.: #66792]	Micromonospora humi DSM 45647	2622736513	draft	JGI IMG/M	745366 tax ID	*

[Ref.: #17970]	GC-content	73 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	73.56 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Micromonospora humi DSM 45647 NCBI: GCA_900090105.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Micromonospora humi strain DSM 45647 PATRIC: 745366.4
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	92.216	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	89.931	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	94.641	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	86.243	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.5	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	88.5	no

Availability in culture collections External links

[Ref.: #17970]

Culture collection no.

DSM 45647, JCM 15292, PCU 315, TISTR 1883

[Ref.: #77448]

SI-ID 404173

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Micromonospora nickelidurans sp. nov., isolated from soil from a nickel-mining site.	Lin YB, Fan MC, Guo YQ, Di XH, Dong DH, Zhang X, Wei GH	Int J Syst Evol Microbiol	10.1099/ijsem.0.000623	2015	*
Phylogeny	Micromonospora maritima sp. nov., isolated from mangrove soil.	Songsumanus A, Tanasupawat S, Igarashi Y, Kudo T	Int J Syst Evol Microbiol	10.1099/ijs.0.039180-0	2012	*
Phylogeny	Micromonospora humi sp. nov., isolated from peat swamp forest soil.	Songsumanus A, Tanasupawat S, Thawai C, Suwanborirux K, Kudo T	Int J Syst Evol Microbiol	10.1099/ijs.0.024281-0	2010	*

References

#17970

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45647

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69415

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77448

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404173.1 )

* These data were automatically processed and therefore are not curated

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Micromonospora humi DSM 45647

Micromonospora humi strain DSM 45647

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