Micromonospora marina (DSM 45555, JCM 12870, PCU 269)

Name: Micromonospora marina (DSM 45555, JCM 12870, PCU 269)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 8016

Type strain

Strain Designation JSM1-1

Culture col. no. DSM 45555 JCM 12870 PCU 269 TISTR 1566 JSM1-1

NCBI tax ID(s) 307120

Special Collections DSMZ JCM Literature strains

Links

Micromonospora marina JSM1-1 is an aerobe, spore-forming, mesophilic prokaryote that was isolated from sand collected along the sea shore.

spore-forming Gram-positive aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 403844

JCM 12870,DSM 45555

@ref 20215

Last LPSN update 2025-12-16 09:48:44

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Micromonosporales

Family Micromonosporaceae

Genus Micromonospora

Species Micromonospora marina

Full scientific name Micromonospora marina Tanasupawat et al. 2010

BacDive ID	Other strains from **Micromonospora marina** (3)	Type strain
161275	M. marina JCM 12871
161276	M. marina JCM 12872
161901	M. marina JCM 17012

Morphology

Cell morphology

@ref	Confidence	Gram stain
29486		positive
125438	91
125438	90.304	positive
125439	99.8	positive

Pigmentation

29486

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
17434	N-Z-AMINE-MEDIUM (DSMZ Medium 554)	Medium recipe at MediaDive	Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water
17434	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
17434	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
17434	positive	growth	28	mesophilic
29486	positive	growth	15-45
29486	positive	optimum	27.5	mesophilic
67770	positive	growth	28	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
29486	positive	growth	05-09	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
29486	aerobe
125438	aerobe	90.084
125439	obligate aerobe	99.7

Spore formation

@ref	Spore formation	Confidence
29486
125438		92.745
125439		92.4

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29486	NaCl	positive	growth	7 %

Observation

67770

Observationquinones: MK-10(H₄), MK-10(H₆), MK-10(H₈)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29486	22599 ChEBI	arabinose	+	carbon source
29486	28757 ChEBI	fructose	+	carbon source
29486	28260 ChEBI	galactose	+	carbon source
29486	17234 ChEBI	glucose	+	carbon source
29486	17754 ChEBI	glycerol	+	carbon source
29486	29864 ChEBI	mannitol	+	carbon source
29486	28053 ChEBI	melibiose	+	carbon source
29486	16634 ChEBI	raffinose	+	carbon source
29486	26546 ChEBI	rhamnose	+	carbon source
29486	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity
29486	gelatinase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Coast
#Environmental	#Terrestrial	#Sandy

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
17434	sand collected along the sea shore	Prajuabkirikhun Province, Hua-Hin	Thailand	THA	Asia
67770	Sand along the sea shore in Hua-Hin	Prajuabkirikhun Province	Thailand	THA	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB196712 (>99% sequence identity) for Micromonospora from Microbeatlas

Aquatic Samples	188
Soil Samples	470
Animal Samples	133
Plant Samples	13
Total Samples	804

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17434	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2622736534 annotated assembly for Micromonospora marina DSM 45555	scaffold	GCA_900091565	307120.5	2622736534	307120	62.49
124043	ASM4243176v1 assembly for Micromonospora marina PCU 269	scaffold	GCA_042431765			307120	58.2

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
17434	Micromonospora marina gene for 16S rRNA, partial sequence, strain: JSM1-1	AB196712	1437	307120
124043	Micromonospora marina strain PCU 269 16S ribosomal RNA gene, partial sequence.	MT760025	1332	307120
124043	Micromonospora marina strain PCU 269 16S ribosomal RNA gene, partial sequence.	MT758141	1332	307120

GC content

@ref	GC-content (mol%)	Method
17434	72	high performance liquid chromatography (HPLC)
29486	72
67770	72.83	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Micromonospora marina DSM 45555
NCBI: GCA_900091565

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	92.40	no
125439	motility	BacteriaNetⓘ	no	89.70	no
125439	gram_stain	BacteriaNetⓘ	positive	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Micromonospora marina strain DSM 45555
PATRIC: 307120.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.30	yes
125438	anaerobic	anaerobicⓘ	no	97.36	yes
125438	spore-forming	spore-formingⓘ	yes	92.75	no
125438	aerobic	aerobicⓘ	yes	90.08	yes
125438	thermophilic	thermophileⓘ	no	95.00	yes
125438	flagellated	motile2+ⓘ	no	91.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Actinomycetes as Producers of Biologically Active Terpenoids: Current Trends and Patents.	Tarasova EV, Luchnikova NA, Grishko VV, Ivshina IB.	Pharmaceuticals (Basel)	10.3390/ph16060872	2023
Phylogeny	Characterization of bioactive compound isolated from Micromonospora marina KPMS1 and its activity against emerging antibiotics resistant strains of Klebsiella pneumoniae HAUTI7 and Proteus vulgaris HAUTI14.	Raja MMM, Reehana N, Ahamed AA, Begum AF.	Int J Biol Macromol	10.1016/j.ijbiomac.2023.125954	2023
Enzymology	Characterization of Micromonocyclol Synthase from the Marine Actinomycete Micromonospora marina.	Rinkel J, Dickschat JS.	Org Lett	10.1021/acs.orglett.9b03654	2019
Enzymology	Functional characterisation of twelve terpene synthases from actinobacteria.	Chhalodia AK, Xu H, Tabekoueng GB, Gu B, Taizoumbe KA, Lauterbach L, Dickschat JS.	Beilstein J Org Chem	10.3762/bjoc.19.100	2023
	Thiocoraline mediates drug resistance in MCF-7 cells via PI3K/Akt/BCRP signaling pathway.	Jin J, Zhao Y, Guo W, Wang B, Wang Y, Liu X, Xu C.	Cytotechnology	10.1007/s10616-019-00301-w	2019
	Composition and biodiversity of soil and root-associated microbiome in Vitis vinifera cultivar Lambrusco distinguish the microbial terroir of the Lambrusco DOC protected designation of origin area on a local scale.	Nanetti E, Palladino G, Scicchitano D, Trapella G, Cinti N, Fabbrini M, Cozzi A, Accetta G, Tassini C, Iannaccone L, Candela M, Rampelli S.	Front Microbiol	10.3389/fmicb.2023.1108036	2023
Enzymology	A New Micromonospora Strain with Antibiotic Activity Isolated from the Microbiome of a Mid-Atlantic Deep-Sea Sponge.	Back CR, Stennett HL, Williams SE, Wang L, Ojeda Gomez J, Abdulle OM, Duffy T, Neal C, Mantell J, Jepson MA, Hendry KR, Powell D, Stach JEM, Essex-Lopresti AE, Willis CL, Curnow P, Race PR.	Mar Drugs	10.3390/md19020105	2021
	Marine compounds inhibit growth of multiple myeloma in vitro and in vivo.	Steiner N, Ribatti D, Willenbacher W, Johrer K, Kern J, Marinaccio C, Aracil M, Garcia-Fernandez LF, Gastl G, Untergasser G, Gunsilius E.	Oncotarget	10.18632/oncotarget.3362	2015
Metabolism	First natural analogs of the cytotoxic thiodepsipeptide thiocoraline A from a marine Verrucosispora sp.	Wyche TP, Hou Y, Braun D, Cohen HC, Xiong MP, Bugni TS.	J Org Chem	10.1021/jo200661n	2011
Phylogeny	Genome-based classification of micromonosporae with a focus on their biotechnological and ecological potential.	Carro L, Nouioui I, Sangal V, Meier-Kolthoff JP, Trujillo ME, Montero-Calasanz MDC, Sahin N, Smith DL, Kim KE, Peluso P, Deshpande S, Woyke T, Shapiro N, Kyrpides NC, Klenk HP, Goker M, Goodfellow M.	Sci Rep	10.1038/s41598-017-17392-0	2018
	Mode of action of thiocoraline, a natural marine compound with anti-tumour activity.	Erba E, Bergamaschi D, Ronzoni S, Faretta M, Taverna S, Bonfanti M, Catapano CV, Faircloth G, Jimeno J, D'Incalci M.	Br J Cancer	10.1038/sj.bjc.6690451	1999
Enzymology	Screening marine fungi for inhibitors of the C4 plant enzyme pyruvate phosphate dikinase: unguinol as a potential novel herbicide candidate.	Motti CA, Bourne DG, Burnell JN, Doyle JR, Haines DS, Liptrot CH, Llewellyn LE, Ludke S, Muirhead A, Tapiolas DM.	Appl Environ Microbiol	10.1128/aem.02479-06	2007
	Marine sediment-derived Streptomyces bacteria from British Columbia, Canada are a promising microbiota resource for the discovery of antimicrobial natural products.	Dalisay DS, Williams DE, Wang XL, Centko R, Chen J, Andersen RJ.	PLoS One	10.1371/journal.pone.0077078	2013
Metabolism	Biotechnological and Ecological Potential of Micromonospora provocatoris sp. nov., a Gifted Strain Isolated from the Challenger Deep of the Mariana Trench.	Abdel-Mageed WM, Al-Wahaibi LH, Lehri B, Al-Saleem MSM, Goodfellow M, Kusuma AB, Nouioui I, Soleh H, Pathom-Aree W, Jaspars M, Karlyshev AV.	Mar Drugs	10.3390/md19050243	2021
Phylogeny	Micromonospora fluminis sp. nov., isolated from mountain river sediment.	Camacho Pozo MI, Wieme AD, Rodriguez Perez S, Llaurado Maury G, Peeters C, Snauwaert C, Lescaylle Veranes Y, Pena Zamora L, Schumann P, Vandamme PA	Int J Syst Evol Microbiol	10.1099/ijsem.0.004554	2020
Phylogeny	Micromonospora schwarzwaldensis sp. nov., a producer of telomycin, isolated from soil.	Gurovic MSV, Muller S, Domin N, Seccareccia I, Nietzsche S, Martin K, Nett M	Int J Syst Evol Microbiol	10.1099/ijs.0.051623-0	2013
Phylogeny	Micromonospora maritima sp. nov., isolated from mangrove soil.	Songsumanus A, Tanasupawat S, Igarashi Y, Kudo T	Int J Syst Evol Microbiol	10.1099/ijs.0.039180-0	2012
Phylogeny	Micromonospora sediminicola sp. nov., isolated from marine sediment.	Supong K, Suriyachadkun C, Tanasupawat S, Suwanborirux K, Pittayakhajonwut P, Kudo T, Thawai C	Int J Syst Evol Microbiol	10.1099/ijs.0.041103-0	2012
Phylogeny	Micromonospora humi sp. nov., isolated from peat swamp forest soil.	Songsumanus A, Tanasupawat S, Thawai C, Suwanborirux K, Kudo T	Int J Syst Evol Microbiol	10.1099/ijs.0.024281-0	2010
Phylogeny	Micromonospora marina sp. nov., isolated from sea sand.	Tanasupawat S, Jongrungruangchok S, Kudo T	Int J Syst Evol Microbiol	10.1099/ijs.0.014068-0	2009

References

#17434	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45555
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25886	IJSEM 648 2010 ( DOI 10.1099/ijs.0.014068-0 , PubMed 19656925 )
#29486	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25886
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Micromonospora marina (DSM 45555, JCM 12870, PCU 269)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900091565

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media