Micromonospora pattaloongensis (DSM 45245, JCM 12833, TISTR 1559)

Name: Micromonospora pattaloongensis (DSM 45245, JCM 12833, TISTR 1559)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 8013

Type strain

Strain Designation TJ2-2

Culture col. no. DSM 45245 JCM 12833 TISTR 1559 TJ2-2 NRRL B-24764

NCBI tax ID(s) 405436

Special Collections DSMZ JCM Literature strains

History DSMZ <- JCM/RIKEN; JCM 12833 <- C. Thawai; TJ2-2 JCM <-- C. Thawai TJ2-2.

Links

Micromonospora pattaloongensis TJ2-2 is a spore-forming, Gram-positive bacterium that was isolated from Thai mangrove forest.

spore-forming Gram-positive genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 396994

JCM 12833,DSM 45245

@ref 20215

Last LPSN update 2026-05-29 08:26:46

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micromonosporales

Family Micromonosporaceae

Genus Micromonospora

Species Micromonospora pattaloongensis

Full scientific name Micromonospora pattaloongensis Thawai et al. 2008

Morphology

Cell morphology

@ref	Gram stain	Motility	Confidence
32385	positive
125439	positive		98.171

Pigmentation

32385

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
15929	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
15929	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
15929	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
15929	positive	growth	28
32385	positive	growth	25-40
32385	positive	optimum	27.5
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.655

Spore formation

32385

Spore formationyes

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32385	NaCl	positive	growth	<3 %

Observation

67770

Observationquinones: MK-10(H₄), MK-10(H₆), MK-10(H₈)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32385	22599 ChEBI	arabinose	+	carbon source
32385	17057 ChEBI	cellobiose	+	carbon source
32385	28757 ChEBI	fructose	+	carbon source
32385	28260 ChEBI	galactose	+	carbon source
32385	17234 ChEBI	glucose	+	carbon source
32385	17716 ChEBI	lactose	+	carbon source
32385	17632 ChEBI	nitrate	+	reduction
32385	33942 ChEBI	ribose	+	carbon source
32385	17814 ChEBI	salicin	+	carbon source
32385	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity
32385	gelatinase	+

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	palmitate biosynthesis	100	22 of 22
66794	valine metabolism	100	9 of 9
66794	sulfopterin metabolism	100	4 of 4
66794	coenzyme A metabolism	100	4 of 4
66794	ketogluconate metabolism	100	8 of 8
66794	formaldehyde oxidation	100	3 of 3
66794	glycolate and glyoxylate degradation	100	6 of 6
66794	adipate degradation	100	2 of 2
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	cardiolipin biosynthesis	100	7 of 7
66794	starch degradation	100	10 of 10
66794	molybdenum cofactor biosynthesis	100	9 of 9
66794	1,4-dihydroxy-6-naphthoate biosynthesis	100	6 of 6
66794	biotin biosynthesis	100	4 of 4
66794	acetate fermentation	100	4 of 4
66794	cellulose degradation	100	5 of 5
66794	ppGpp biosynthesis	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	aerobactin biosynthesis	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	ceramide biosynthesis	100	1 of 1
66794	taurine degradation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	mannosylglycerate biosynthesis	100	2 of 2
66794	suberin monomers biosynthesis	100	2 of 2
66794	phenylalanine metabolism	92.31	12 of 13
66794	pentose phosphate pathway	90.91	10 of 11
66794	Entner Doudoroff pathway	90	9 of 10
66794	threonine metabolism	90	9 of 10
66794	chorismate metabolism	88.89	8 of 9
66794	NAD metabolism	88.89	16 of 18
66794	4-hydroxymandelate degradation	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	isoleucine metabolism	87.5	7 of 8
66794	gluconeogenesis	87.5	7 of 8
66794	peptidoglycan biosynthesis	86.67	13 of 15
66794	photosynthesis	85.71	12 of 14
66794	glutathione metabolism	85.71	12 of 14
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	ubiquinone biosynthesis	85.71	6 of 7
66794	vitamin B12 metabolism	85.29	29 of 34
66794	leucine metabolism	84.62	11 of 13
66794	selenocysteine biosynthesis	83.33	5 of 6
66794	factor 420 biosynthesis	80	4 of 5
66794	flavin biosynthesis	80	12 of 15
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	glycogen metabolism	80	4 of 5
66794	heme metabolism	78.57	11 of 14
66794	glutamate and glutamine metabolism	78.57	22 of 28
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	purine metabolism	77.66	73 of 94
66794	urea cycle	76.92	10 of 13
66794	glycolysis	76.47	13 of 17
66794	histidine metabolism	75.86	22 of 29
66794	alanine metabolism	75.86	22 of 29
66794	glycogen biosynthesis	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	lipid metabolism	74.19	23 of 31
66794	lysine metabolism	73.81	31 of 42
66794	proline metabolism	72.73	8 of 11
66794	cysteine metabolism	72.22	13 of 18
66794	degradation of sugar acids	72	18 of 25
66794	tetrahydrofolate metabolism	71.43	10 of 14
66794	propanol degradation	71.43	5 of 7
66794	tyrosine metabolism	71.43	10 of 14
66794	citric acid cycle	71.43	10 of 14
66794	non-pathway related	71.05	27 of 38
66794	arginine metabolism	70.83	17 of 24
66794	myo-inositol biosynthesis	70	7 of 10
66794	methionine metabolism	69.23	18 of 26
66794	vitamin B1 metabolism	69.23	9 of 13
66794	pyrimidine metabolism	68.89	31 of 45
66794	tryptophan metabolism	68.42	26 of 38
66794	oxidative phosphorylation	68.13	62 of 91
66794	acetoin degradation	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	degradation of pentoses	64.29	18 of 28
66794	d-xylose degradation	63.64	7 of 11
66794	metabolism of disaccharids	63.64	7 of 11
66794	degradation of sugar alcohols	62.5	10 of 16
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	phosphatidylethanolamine bioynthesis	61.54	8 of 13
66794	gallate degradation	60	3 of 5
66794	lipoate biosynthesis	60	3 of 5
66794	propionate fermentation	60	6 of 10
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	arachidonate biosynthesis	60	3 of 5
66794	carotenoid biosynthesis	54.55	12 of 22
66794	3-phenylpropionate degradation	53.33	8 of 15
66794	kanosamine biosynthesis II	50	1 of 2
66794	cyclohexanol degradation	50	2 of 4
66794	pantothenate biosynthesis	50	3 of 6
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	toluene degradation	50	2 of 4
66794	ribulose monophosphate pathway	50	1 of 2
66794	lactate fermentation	50	2 of 4
66794	coenzyme M biosynthesis	50	5 of 10
66794	degradation of hexoses	50	9 of 18
66794	butanoate fermentation	50	2 of 4
66794	resorcinol degradation	50	1 of 2
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	phenol degradation	50	10 of 20
66794	ethanol fermentation	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	CMP-KDO biosynthesis	50	2 of 4
66794	glycine metabolism	50	5 of 10
66794	polyamine pathway	47.83	11 of 23
66794	sulfate reduction	46.15	6 of 13
66794	vitamin B6 metabolism	45.45	5 of 11
66794	nitrate assimilation	44.44	4 of 9
66794	lipid A biosynthesis	44.44	4 of 9
66794	androgen and estrogen metabolism	43.75	7 of 16
66794	bile acid biosynthesis, neutral pathway	41.18	7 of 17
66794	3-chlorocatechol degradation	40	2 of 5
66794	D-cycloserine biosynthesis	40	2 of 5
66794	vitamin K metabolism	40	2 of 5
66794	glycine betaine biosynthesis	40	2 of 5
66794	chlorophyll metabolism	38.89	7 of 18
66794	ascorbate metabolism	36.36	8 of 22
66794	dolichyl-diphosphooligosaccharide biosynthesis	36.36	4 of 11
66794	enterobactin biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	allantoin degradation	33.33	3 of 9
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	methanogenesis from CO2	25	3 of 12
66794	vitamin E metabolism	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	catecholamine biosynthesis	25	1 of 4

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Mangrove
#Environmental	#Terrestrial	#Forest

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
15929	Thai mangrove forest	Pattaloong Province	Thailand	THA	Asia
67770	Soil from mangrove forest	Pattaloong Province	Thailand	THA	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
15929	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2693429860 annotated assembly for Micromonospora pattaloongensis DSM 45245	contig	GCA_900107255	405436.4	2693429860	405436	67.57

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
15929	Micromonospora pattaloongensis gene for 16S ribosomal RNA, partial sequence	AB275607	1511		405436

GC content

@ref	GC-content (mol%)	Method
15929	71.5
67770	71.5	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: IMG-taxon 2693429860 annotated assembly for Micromonospora pattaloongensis DSM 45245
BV-BRC: 405436.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.66	no
125439	gram_stain	BacteriaNetⓘ	positive	98.17	no
125439	motility	BacteriaNetⓘ	no	82.98	no
125439	spore_formation	BacteriaNetⓘ	yes	59.63	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Micromonospora pattaloongensis strain DSM 45245
PATRIC: 405436.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.90	yes
125438	anaerobic	anaerobicⓘ	no	94.40	no
125438	spore-forming	spore-formingⓘ	yes	86.93	no
125438	aerobic	aerobicⓘ	yes	88.90	no
125438	thermophilic	thermophileⓘ	no	90.72	yes
125438	flagellated	motile2+ⓘ	no	62.83	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Complete genome sequence of Thermobispora bispora type strain (R51).	Liolios K, Sikorski J, Jando M, Lapidus A, Copeland A, Glavina T, Del Rio, Nolan M, Lucas S, Tice H, Cheng JF, Han C, Woyke T, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, Mikhailova N, Chertkov O, Kuske C, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Detter JC, Brettin T, Rohde M, Goker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Klenk HP, Kyrpides NC.	Stand Genomic Sci	10.4056/sigs.962171	2010
Phylogeny	Melissospora conviva gen. nov., sp. nov., a novel actinobacterial genus isolated from beehive through cross-feeding interactions.	Tellatin D, Cornet L, Snauwaert V, Compere P, Ongena M, Quinton L, Stulanovic N, Ribeiro Monteiro S, Rigolet A, Burguet P, Van Damme P, Carro L, Rigali S.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006868	2025
Phylogeny	Six novel species of the obligate marine actinobacterium Salinispora, Salinispora cortesiana sp. nov., Salinispora fenicalii sp. nov., Salinispora goodfellowii sp. nov., Salinispora mooreana sp. nov., Salinispora oceanensis sp. nov. and Salinispora vitiensis sp. nov., and emended description of the genus Salinispora.	Roman-Ponce B, Millan-Aguinaga N, Guillen-Matus D, Chase AB, Ginigini JGM, Soapi K, Feussner KD, Jensen PR, Trujillo ME.	Int J Syst Evol Microbiol	10.1099/ijsem.0.004330	2020
Phylogeny	Micromonospora ovatispora sp. nov. isolated from mangrove soil.	Li L, Hong K	Int J Syst Evol Microbiol	10.1099/ijsem.0.000808	2015
Phylogeny	Micromonospora zhanjiangensis sp. nov., isolated from mangrove forest soil.	Zhang L, Li L, Deng Z, Hong K	Int J Syst Evol Microbiol	10.1099/ijsem.0.000667	2015
Phylogeny	Micromonospora polyrhachis sp. nov., an actinomycete isolated from edible Chinese black ant (Polyrhachis vicina Roger).	Xiang W, Yu C, Liu C, Zhao J, Yang L, Xie B, Li L, Hong K, Wang X	Int J Syst Evol Microbiol	10.1099/ijs.0.055863-0	2013
Phylogeny	Micromonospora sonneratiae sp. nov., isolated from a root of Sonneratia apetala.	Li L, Tang YL, Wei B, Xie QY, Deng Z, Hong K	Int J Syst Evol Microbiol	10.1099/ijs.0.043570-0	2012
Phylogeny	Micromonospora rhizosphaerae sp. nov., isolated from mangrove rhizosphere soil.	Wang C, Xu XX, Qu Z, Wang HL, Lin HP, Xie QY, Ruan JS, Hong K	Int J Syst Evol Microbiol	10.1099/ijs.0.020461-0	2010
Phylogeny	Micromonospora pisi sp. nov., isolated from root nodules of Pisum sativum.	C Garcia L, Martinez-Molina E, Trujillo ME	Int J Syst Evol Microbiol	10.1099/ijs.0.012708-0	2009
Phylogeny	Micromonospora pattaloongensis sp. nov., isolated from a Thai mangrove forest.	Thawai C, Tanasupawat S, Kudo T	Int J Syst Evol Microbiol	10.1099/ijs.0.65410-0	2008

References

#15929	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45245
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28610	IJSEM 1516 2008 ( DOI 10.1099/ijs.0.65410-0 , PubMed 18599686 )
#32385	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28610
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Micromonospora pattaloongensis (DSM 45245, JCM 12833, TISTR 1559)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900107255

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media