Name: Micromonospora lupini DSM 44870
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 8003

Type strain:

Species: Micromonospora lupini

Culture col. no.: DSM 44870, Lupac 08

Strain history: <- M. E. Trujillo; Lupac 08

NCBI tax ID(s): 1150864 (strain), 285679 (species)

SI-ID 297452

DSM 44870

Special Collections

DSMZ

Other strains from Micromonospora lupini

Section

Micromonospora lupini DSM 44870 is a bacterium that was isolated from root nodules of Lupinus agustifolius.

16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Micromonospora*
	Species	**Micromonospora lupini**
	Full Scientific Name (LPSN)	Micromonospora lupini Trujillo et al. 2007

Synonym

"Micromonospora lupini"

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12157]

Culture medium

N-Z-AMINE-MEDIUM (DSMZ Medium 554)

[Ref.: #12157]

Culture medium growth

[Ref.: #12157]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12157]

Culture medium composition

expand / minimize

[Ref.: #12157]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #12157]

Culture medium growth

[Ref.: #12157]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #12157]			growth	28 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12157]	Sample type/isolated from	root nodules of Lupinus agustifolius
[Ref.: #12157]	Host species	Lupinus angustifolius
[Ref.: #12157]	Geographic location (country and/or sea, region)	Salamanca
[Ref.: #12157]	Country	Spain
[Ref.: #12157]	Country ISO 3 Code	ESP
[Ref.: #12157]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root nodule

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ783992 (>99% sequence identity) for Micromonospora from Microbeatlas

Aquatic Samples	161
Soil Samples	1017
Animal Samples	219
Plant Samples	22
Total Samples	1419

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12157]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #12157]	Micromonospora lupini partial 16S rRNA gene, strain Lupac 08	AJ783992	1509	GenBank ENA	1150864 tax ID

Availability in culture collections External links

[Ref.: #12157]

Culture collection no.

DSM 44870, Lupac 08

[Ref.: #77433]

SI-ID 297452

Literature:

	Title	Authors	Journal	DOI	Year
Metabolism	Genome features of the endophytic actinobacterium Micromonospora lupini strain Lupac 08: on the process of adaptation to an endophytic life style?	Trujillo ME, Bacigalupe R, Pujic P, Igarashi Y, Benito P, Riesco R, Medigue C, Normand P	PLoS One	10.1371/journal.pone.0108522	2014	*
Genetics	Genome sequence of Micromonospora lupini Lupac 08, isolated from root nodules of Lupinus angustifolius.	Alonso-Vega P, Normand P, Bacigalupe R, Pujic P, Lajus A, Vallenet D, Carro L, Coll P, Trujillo ME	J Bacteriol	10.1128/JB.00628-12	2012	*
	Endophytic Actinobacteria and the Interaction of Micromonospora and Nitrogen Fixing Plants.	Trujillo ME, Riesco R, Benito P, Carro L	Front Microbiol	10.3389/fmicb.2015.01341	2015	*

References

#12157

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44870

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#77433

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297452.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Micromonospora lupini in external resources:
SILVA
BRENDA
PANGAEA
GBIF