Name: Micromonospora endolithica AA-459
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7984

Type strain:

Species: Micromonospora endolithica

Strain Designation: AA-459

Culture col. no.: DSM 44398, CIP 108382, IFAM AA-459, JCM 12677, NBRC 101889, NRRL B-24248

Strain history: CIP <- 2004, DSMZ <- P. Hirsch, Kiel Univ., Kiel, Germany: strain AA-459

NCBI tax ID(s): 230091 (species)

SI-ID 97523

DSM 44398, NRRL B-24248, CIP 108382, JCM 12677, NBRC 101889

Section

Micromonospora endolithica AA-459 is an obligate aerobe, spore-forming, mesophilic bacterium that was isolated from sandstone of Linnaeus Terrace .

spore-forming
mesophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Micromonospora*
	Species	**Micromonospora endolithica**
	Full Scientific Name (LPSN)	Micromonospora endolithica Hirsch et al. 2004

Information on morphological and physiological properties Morphology

[Ref.: #119027]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #119027]	Cell shape	rod-shaped

[Ref.: #119027]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %92.176

[Ref.: #19662]	Colony color	Red orange
[Ref.: #19662]	Incubation period	10-14 days
[Ref.: #19662]	Cultivation medium used	ISP 2

[Ref.: #19662]	Colony color	Red orange
[Ref.: #19662]	Incubation period	10-14 days
[Ref.: #19662]	Cultivation medium used	ISP 3

[Ref.: #19662]	Colony color	Pastel yellow
[Ref.: #19662]	Incubation period	10-14 days
[Ref.: #19662]	Cultivation medium used	ISP 4

[Ref.: #19662]	Colony color	Pastel yellow
[Ref.: #19662]	Incubation period	10-14 days
[Ref.: #19662]	Cultivation medium used	ISP 5

[Ref.: #19662]	Colony color	Pastel yellow
[Ref.: #19662]	Incubation period	10-14 days
[Ref.: #19662]	Cultivation medium used	ISP 6

[Ref.: #19662]	Colony color	Pastel yellow
[Ref.: #19662]	Incubation period	10-14 days
[Ref.: #19662]	Cultivation medium used	ISP 7

[Ref.: #19662]	Multicellular complex forming ability	no
[Ref.: #19662]	Medium Name (multicellularity)	ISP 2

[Ref.: #19662]	Multicellular complex forming ability	no
[Ref.: #19662]	Medium Name (multicellularity)	ISP 3

[Ref.: #19662]	Multicellular complex forming ability	no
[Ref.: #19662]	Medium Name (multicellularity)	ISP 4

[Ref.: #19662]	Multicellular complex forming ability	no
[Ref.: #19662]	Medium Name (multicellularity)	ISP 5

[Ref.: #19662]	Multicellular complex forming ability	no
[Ref.: #19662]	Medium Name (multicellularity)	ISP 6

[Ref.: #19662]	Multicellular complex forming ability	no
[Ref.: #19662]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #11722]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #11722]

Culture medium growth

[Ref.: #11722]

Culture medium link

Medium recipe at MediaDive

[Ref.: #11722]

Culture medium composition

expand / minimize

[Ref.: #19662]

Culture medium

ISP 2

[Ref.: #19662]

Culture medium growth

[Ref.: #19662]

Culture medium composition

expand / minimize

[Ref.: #19662]

Culture medium

ISP 3

[Ref.: #19662]

Culture medium growth

[Ref.: #19662]

Culture medium composition

expand / minimize

[Ref.: #19662]

Culture medium

ISP 4

[Ref.: #19662]

Culture medium growth

[Ref.: #19662]

Culture medium composition

expand / minimize

[Ref.: #19662]

Culture medium

ISP 5

[Ref.: #19662]

Culture medium growth

[Ref.: #19662]

Culture medium composition

expand / minimize

[Ref.: #19662]

Culture medium

ISP 6

[Ref.: #19662]

Culture medium growth

[Ref.: #19662]

Culture medium composition

expand / minimize

[Ref.: #19662]

Culture medium

ISP 7

[Ref.: #19662]

Culture medium growth

[Ref.: #19662]

Culture medium composition

expand / minimize

[Ref.: #36434]

Culture medium

MEDIUM 57 - for Streptomyces, Nocardioides, Lentzea albidocapillata and Streptoverticillium reticulum

[Ref.: #36434]

Culture medium growth

[Ref.: #36434]

Culture medium composition

expand / minimize

[Ref.: #11722]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #11722]

Culture medium growth

[Ref.: #11722]

Culture medium link

Medium recipe at MediaDive

[Ref.: #11722]

Culture medium composition

expand / minimize

[Ref.: #119027]

Culture medium

CIP Medium 72

[Ref.: #119027]

Culture medium growth

[Ref.: #119027]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #119027]

Culture medium

CIP Medium 57

[Ref.: #119027]

Culture medium growth

[Ref.: #119027]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #11722]		growth	28 °C
[Ref.: #19662]		optimum	28 °C
[Ref.: #36434]		growth	30 °C
[Ref.: #67770]		growth	28 °C
[Ref.: #119027]		growth	25-37 °C
[Ref.: #119027]	no	growth	10 °C
[Ref.: #119027]	no	growth	41 °C
[Ref.: #119027]	no	growth	45 °C

[Ref.: #11722]	Temperature range	mesophilic
[Ref.: #19662]	Temperature range	mesophilic
[Ref.: #36434]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #119027]	Temperature range	mesophilic
[Ref.: #119027]	Temperature range	psychrophilic
[Ref.: #119027]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #119027]

Oxygen tolerance

obligate aerobe

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %99.999

	Salt	Tested relation		Salt conc.
[Ref.: #119027]	NaCl		growth	0-2	%
[Ref.: #119027]	NaCl	no	growth	4	%
[Ref.: #119027]	NaCl	no	growth	6	%
[Ref.: #119027]	NaCl	no	growth	8	%
[Ref.: #119027]	NaCl	no	growth	10	%

[Ref.: #67770]

Observation

quinones: MK-10(H₄), MK-10(H₆)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #19662]	arabinose ChEBI	+
[Ref.: #19662]	cellulose ChEBI	+
[Ref.: #119027]	citrate ChEBI	-	carbon source
[Ref.: #119027]	esculin ChEBI	-	hydrolysis
[Ref.: #19662]	fructose ChEBI	-
[Ref.: #19662]	glucose ChEBI	+
[Ref.: #19662]	mannitol ChEBI	-
[Ref.: #19662]	myo-inositol ChEBI	+
[Ref.: #119027]	nitrate ChEBI	+	reduction
[Ref.: #119027]	nitrate ChEBI	-	respiration
[Ref.: #119027]	nitrite ChEBI	-	reduction
[Ref.: #19662]	raffinose ChEBI	+
[Ref.: #19662]	rhamnose ChEBI	+
[Ref.: #19662]	sucrose ChEBI	+
[Ref.: #19662]	xylose ChEBI	+
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #119027]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #119027]		acetoin ChEBI	-
[Ref.: #119027]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #119027]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #119027]	amylase	+
[Ref.: #119027]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #119027]	caseinase	+	3.4.21.50
[Ref.: #119027]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #119027]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #119027]	gelatinase	+
[Ref.: #119027]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #119027]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #119027]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #119027]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #119027]	oxidase	+
[Ref.: #119027]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #119027]	tryptophan deaminase	-
[Ref.: #119027]	tween esterase	-
[Ref.: #119027]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #19662]	488	not determinedn.d.	+	+	+	-	+	-	-	-	-	+	-	+	+	-	+	-	+	-	-
[Ref.: #119027]	11136	-	-	+	+	-	+	-	-	+	-	-	-	+	+	-	+	-	+	-	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	phenylacetate degradation (aerobic)	100	5 of 5
[Ref.: #66794]	pentose phosphate pathway	100	11 of 11
[Ref.: #66794]	kanosamine biosynthesis II	100	2 of 2
[Ref.: #66794]	1,4-dihydroxy-6-naphthoate biosynthesis	100	6 of 6
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	cardiolipin biosynthesis	100	7 of 7
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	threonine metabolism	100	10 of 10
[Ref.: #66794]	molybdenum cofactor biosynthesis	100	9 of 9
[Ref.: #66794]	ethanol fermentation	100	2 of 2
[Ref.: #66794]	octane oxidation	100	3 of 3
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	glycolate and glyoxylate degradation	100	6 of 6
[Ref.: #66794]	ribulose monophosphate pathway	100	2 of 2
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	aerobactin biosynthesis	100	1 of 1
[Ref.: #66794]	cellulose degradation	100	5 of 5
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	ceramide biosynthesis	100	1 of 1
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	photosynthesis	92.86	13 of 14
[Ref.: #66794]	leucine metabolism	92.31	12 of 13
[Ref.: #66794]	Entner Doudoroff pathway	90	9 of 10
[Ref.: #66794]	valine metabolism	88.89	8 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	88.89	8 of 9
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	gluconeogenesis	87.5	7 of 8
[Ref.: #66794]	isoleucine metabolism	87.5	7 of 8
[Ref.: #66794]	peptidoglycan biosynthesis	86.67	13 of 15
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	glutathione metabolism	85.71	12 of 14
[Ref.: #66794]	ubiquinone biosynthesis	85.71	6 of 7
[Ref.: #66794]	urea cycle	84.62	11 of 13
[Ref.: #66794]	phenylalanine metabolism	84.62	11 of 13
[Ref.: #66794]	NAD metabolism	83.33	15 of 18
[Ref.: #66794]	selenocysteine biosynthesis	83.33	5 of 6
[Ref.: #66794]	glycolysis	82.35	14 of 17
[Ref.: #66794]	tryptophan metabolism	81.58	31 of 38
[Ref.: #66794]	metabolism of amino sugars and derivatives	80	4 of 5
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	propionate fermentation	80	8 of 10
[Ref.: #66794]	ethylmalonyl-CoA pathway	80	4 of 5
[Ref.: #66794]	flavin biosynthesis	80	12 of 15
[Ref.: #66794]	factor 420 biosynthesis	80	4 of 5
[Ref.: #66794]	histidine metabolism	79.31	23 of 29
[Ref.: #66794]	glutamate and glutamine metabolism	78.57	22 of 28
[Ref.: #66794]	heme metabolism	78.57	11 of 14
[Ref.: #66794]	d-mannose degradation	77.78	7 of 9
[Ref.: #66794]	methionine metabolism	76.92	20 of 26
[Ref.: #66794]	vitamin B1 metabolism	76.92	10 of 13
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	arginine metabolism	75	18 of 24
[Ref.: #66794]	lipid metabolism	74.19	23 of 31
[Ref.: #66794]	proline metabolism	72.73	8 of 11
[Ref.: #66794]	metabolism of disaccharids	72.73	8 of 11
[Ref.: #66794]	alanine metabolism	72.41	21 of 29
[Ref.: #66794]	purine metabolism	72.34	68 of 94
[Ref.: #66794]	aclacinomycin biosynthesis	71.43	5 of 7
[Ref.: #66794]	tyrosine metabolism	71.43	10 of 14
[Ref.: #66794]	tetrahydrofolate metabolism	71.43	10 of 14
[Ref.: #66794]	oxidative phosphorylation	70.33	64 of 91
[Ref.: #66794]	myo-inositol biosynthesis	70	7 of 10
[Ref.: #66794]	lysine metabolism	69.05	29 of 42
[Ref.: #66794]	pyrimidine metabolism	68.89	31 of 45
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	enterobactin biosynthesis	66.67	2 of 3
[Ref.: #66794]	cysteine metabolism	66.67	12 of 18
[Ref.: #66794]	3-phenylpropionate degradation	66.67	10 of 15
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	non-pathway related	65.79	25 of 38
[Ref.: #66794]	isoprenoid biosynthesis	65.38	17 of 26
[Ref.: #66794]	phenol degradation	65	13 of 20
[Ref.: #66794]	citric acid cycle	64.29	9 of 14
[Ref.: #66794]	degradation of pentoses	64.29	18 of 28
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	carotenoid biosynthesis	63.64	14 of 22
[Ref.: #66794]	degradation of sugar alcohols	62.5	10 of 16
[Ref.: #66794]	dTDPLrhamnose biosynthesis	62.5	5 of 8
[Ref.: #66794]	ketogluconate metabolism	62.5	5 of 8
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	61.54	8 of 13
[Ref.: #66794]	degradation of sugar acids	60	15 of 25
[Ref.: #66794]	arachidonate biosynthesis	60	3 of 5
[Ref.: #66794]	glycine metabolism	60	6 of 10
[Ref.: #66794]	3-chlorocatechol degradation	60	3 of 5
[Ref.: #66794]	androgen and estrogen metabolism	56.25	9 of 16
[Ref.: #66794]	4-hydroxymandelate degradation	55.56	5 of 9
[Ref.: #66794]	nitrate assimilation	55.56	5 of 9
[Ref.: #66794]	cholesterol biosynthesis	54.55	6 of 11
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	50	6 of 12
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	degradation of hexoses	50	9 of 18
[Ref.: #66794]	coenzyme M biosynthesis	50	5 of 10
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	lactate fermentation	50	2 of 4
[Ref.: #66794]	toluene degradation	50	2 of 4
[Ref.: #66794]	CMP-KDO biosynthesis	50	2 of 4
[Ref.: #66794]	cyclohexanol degradation	50	2 of 4
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	47.06	8 of 17
[Ref.: #66794]	sulfate reduction	46.15	6 of 13
[Ref.: #66794]	vitamin B6 metabolism	45.45	5 of 11
[Ref.: #66794]	lipid A biosynthesis	44.44	4 of 9
[Ref.: #66794]	polyamine pathway	43.48	10 of 23
[Ref.: #66794]	propanol degradation	42.86	3 of 7
[Ref.: #66794]	vitamin B12 metabolism	41.18	14 of 34
[Ref.: #66794]	glycine betaine biosynthesis	40	2 of 5
[Ref.: #66794]	elloramycin biosynthesis	40	2 of 5
[Ref.: #66794]	vitamin K metabolism	40	2 of 5
[Ref.: #66794]	D-cycloserine biosynthesis	40	2 of 5
[Ref.: #66794]	hydrogen production	40	2 of 5
[Ref.: #66794]	lipoate biosynthesis	40	2 of 5
[Ref.: #66794]	gallate degradation	40	2 of 5
[Ref.: #66794]	carnitine metabolism	37.5	3 of 8
[Ref.: #66794]	ascorbate metabolism	36.36	8 of 22
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	36.36	4 of 11
[Ref.: #66794]	arachidonic acid metabolism	33.33	6 of 18
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	phenylpropanoid biosynthesis	30.77	4 of 13
[Ref.: #66794]	4-hydroxyphenylacetate degradation	30	3 of 10
[Ref.: #66794]	benzoyl-CoA degradation	28.57	2 of 7
[Ref.: #66794]	vitamin E metabolism	25	1 of 4
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
[Ref.: #66794]	allantoin degradation	22.22	2 of 9
[Ref.: #66794]	chlorophyll metabolism	22.22	4 of 18
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11722]	Sample type/isolated from	sandstone of Linnaeus Terrace (1600 m)
[Ref.: #11722]	Geographic location (country and/or sea, region)	Transantarctic Mountains
[Ref.: #11722]	Continent	Australia and Oceania

[Ref.: #67770]	Sample type/isolated from	Antarctic sandstone rock

[Ref.: #119027]	Sample type/isolated from	Environment, Sandstone Linnaeus Terrace
* marker position based on {}

Isolation sources categories

#Engineered	#Built environment	-
#Environmental	#Terrestrial	#Geologic

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #11722]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19662]	Biosafety level	1	Risk group (German classification)
[Ref.: #119027]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Micromonospora endolithica 16S rRNA gene, type strain DSM 44398T	AJ560635	1477	ENA	230091 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Micromonospora endolithica JCM 12677	GCA_003626595	scaffold	GenBank	230091 tax ID
[Ref.: #66792]	Micromonospora endolithica DSM 44398	GCA_007994185	contig	GenBank	230091 tax ID	*
[Ref.: #66792]	Micromonospora endolithica strain DSM 44398	230091.5	wgs	PATRIC	230091 tax ID	*
[Ref.: #66792]	Micromonospora endolithica strain JCM 12677	230091.4	wgs	PATRIC	230091 tax ID	*
[Ref.: #66792]	Micromonospora endolithica AA-459	2585427558	draft	JGI IMG/M	230091 tax ID	*

[Ref.: #11722]	GC-content	70.1 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	70.06 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	72.45 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Micromonospora endolithica JCM 12677 NCBI: GCA_003626595.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Micromonospora endolithica strain DSM 44398 PATRIC: 230091.5
[Ref.: #69480]	motile	no	93.702	no
[Ref.: #69480]	gram-positive	yes	90.773	no
[Ref.: #69480]	anaerobic	no	99.246	no
[Ref.: #69480]	aerobic	yes	94.946	no
[Ref.: #69480]	halophile	no	92.723	no
[Ref.: #69480]	spore-forming	yes	93.119	no
[Ref.: #69480]	glucose-util	yes	86.792	yes
[Ref.: #69480]	flagellated	no	97.476	no
[Ref.: #69480]	thermophile	no	98.681	yes
[Ref.: #69480]	glucose-ferment	no	90.349	no

Availability in culture collections External links

[Ref.: #11722]

Culture collection no.

DSM 44398, CIP 108382, IFAM AA-459, JCM 12677, NBRC 101889, NRRL B-24248

[Ref.: #77417]

SI-ID 97523

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Micromonospora fulva sp. nov., isolated from forest soil.	Lee HJ, Whang KS	Int J Syst Evol Microbiol	10.1099/ijsem.0.001858	2017	*
Phylogeny	Micromonospora terminaliae sp. nov., an endophytic actinobacterium isolated from the surface-sterilized stem of the medicinal plant Terminalia mucronata.	Kaewkla O, Thamchaipinet A, Franco CMM	Int J Syst Evol Microbiol	10.1099/ijsem.0.001600	2017	*
Phylogeny	Cryptoendolithic actinomycetes from antarctic sandstone rock samples: Micromonospora endolithica sp. nov. and two isolates related to Micromonospora coerulea Jensen 1932.	Hirsch P, Mevs U, Kroppenstedt RM, Schumann P, Stackebrandt E	Syst Appl Microbiol	10.1078/072320204322881781	2004	*

References

#11722

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44398

#19662

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#36434 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77417

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID97523.1 )

#119027 Collection of Institut Pasteur ; Curators of the CIP; CIP 108382
* These data were automatically processed and therefore are not curated

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Micromonospora endolithica JCM 12677

Micromonospora endolithica strain DSM 44398

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