Micromonospora endolithica (DSM 44398, CIP 108382, IFAM AA-459)

Name: Micromonospora endolithica (DSM 44398, CIP 108382, IFAM AA-459)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7984

Type strain

Strain Designation AA-459

Culture col. no. DSM 44398 CIP 108382 IFAM AA-459 JCM 12677 NBRC 101889 2 more

NCBI tax ID(s) 230091

Special Collections DSMZ JCM CIP Wink compendium

History <- P. Hirsch, Univ. Kiel; AA-459 DSM 44398 <-- P. Hirsch AA-459. CIP <- 2004, DSMZ <- P. Hirsch, Kiel Univ., Kiel, Germany: strain AA-459

Links

Micromonospora endolithica AA-459 is an obligate aerobe, Gram-positive, rod-shaped bacterium that was isolated from sandstone of Linnaeus Terrace .

Gram-positive rod-shaped obligate aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 97523

DSM 44398,NRRL B-24248,CIP 108382,JCM 12677,NBRC 101889

@ref 20215

Last LPSN update 2026-02-09 11:19:36

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micromonosporales

Family Micromonosporaceae

Genus Micromonospora

Species Micromonospora endolithica

Full scientific name Micromonospora endolithica Hirsch et al. 2004

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
119027	positive	rod-shaped
125438	positive		90.748
125439	positive		99.9
125439			91.3

Colony morphology

@ref	Colony color	Incubation period	Medium used
19662	Red orange	10-14 days	ISP 2
19662	Red orange	10-14 days	ISP 3
19662	Pastel yellow	10-14 days	ISP 4
19662	Pastel yellow	10-14 days	ISP 5
19662	Pastel yellow	10-14 days	ISP 6
19662	Pastel yellow	10-14 days	ISP 7
119027

Multicellular morphology

@ref	Forms multicellular complex	Medium name
19662		ISP 2
19662		ISP 3
19662		ISP 4
19662		ISP 5
19662		ISP 6
19662		ISP 7

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
11722	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
19662	ISP 2		Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
19662	ISP 3		Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
19662	ISP 4		Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
19662	ISP 5		Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
19662	ISP 6		Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
19662	ISP 7		Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
36434	MEDIUM 57 - for Streptomyces, Nocardioides, Lentzea albidocapillata and Streptoverticillium reticulum		Distilled water make up to (1000.000 ml);Agar (15.000 g);Glucose (4.000g);Yeast extract (4.000 g);Malt extract (10.000 g);Calcium carbonate (2.000 g)
11722	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
119027	CIP Medium 72	Medium recipe at CIP
119027	CIP Medium 57	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
11722	positive	growth	28
19662	positive	optimum	28
36434	positive	growth	30
67770	positive	growth	28
119027	positive	growth	25-37
119027	negative	growth	10
119027	negative	growth	41
119027	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
119027	obligate aerobe
125439	obligate aerobe	99.7

Spore formation

@ref	Spore formation	Confidence
125438		90.769
125439		95.4

Halophily

@ref	Salt	Growth	Tested relation	Concentration
119027	NaCl	positive	growth	0-2 %
119027	NaCl		growth	4 %
119027	NaCl		growth	6 %
119027	NaCl		growth	8 %
119027	NaCl		growth	10 %

Observation

67770

Observationquinones: MK-10(H₄), MK-10(H₆)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
19662	22599 ChEBI	arabinose	+
19662	62968 ChEBI	cellulose	+
119027	16947 ChEBI	citrate	-	carbon source
119027	4853 ChEBI	esculin	-	hydrolysis
19662	28757 ChEBI	fructose	-
19662	17234 ChEBI	glucose	+
19662	29864 ChEBI	mannitol	-
19662	17268 ChEBI	myo-inositol	+
119027	17632 ChEBI	nitrate	+	reduction
119027	17632 ChEBI	nitrate	-	respiration
119027	16301 ChEBI	nitrite	-	reduction
19662	16634 ChEBI	raffinose	+
19662	26546 ChEBI	rhamnose	+
19662	17992 ChEBI	sucrose	+
19662	18222 ChEBI	xylose	+

Metabolite production

@ref	Chebi-ID	Metabolite	Production
119027	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
119027	15688 ChEBI	acetoin	-
119027	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
119027	alcohol dehydrogenase	-	1.1.1.1
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
119027	amylase	+
68382	beta-galactosidase	+	3.2.1.23	from API zym
119027	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
119027	caseinase	+	3.4.21.50
119027	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
119027	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
119027	gelatinase	+
119027	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
119027	lipase	-
68382	lipase (C 14)	-		from API zym
119027	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
119027	ornithine decarboxylase	-	4.1.1.17
119027	oxidase	+
119027	phenylalanine ammonia-lyase	-	4.3.1.24
119027	tryptophan deaminase	-
119027	tween esterase	-
119027	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	ppGpp biosynthesis	100	4 of 4
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	pentose phosphate pathway	100	11 of 11
66794	kanosamine biosynthesis II	100	2 of 2
66794	1,4-dihydroxy-6-naphthoate biosynthesis	100	6 of 6
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	cardiolipin biosynthesis	100	7 of 7
66794	adipate degradation	100	2 of 2
66794	threonine metabolism	100	10 of 10
66794	molybdenum cofactor biosynthesis	100	9 of 9
66794	ethanol fermentation	100	2 of 2
66794	octane oxidation	100	3 of 3
66794	acetate fermentation	100	4 of 4
66794	biotin biosynthesis	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	starch degradation	100	10 of 10
66794	methylglyoxal degradation	100	5 of 5
66794	glycolate and glyoxylate degradation	100	6 of 6
66794	ribulose monophosphate pathway	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	formaldehyde oxidation	100	3 of 3
66794	aerobactin biosynthesis	100	1 of 1
66794	cellulose degradation	100	5 of 5
66794	suberin monomers biosynthesis	100	2 of 2
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	ceramide biosynthesis	100	1 of 1
66794	coenzyme A metabolism	100	4 of 4
66794	photosynthesis	92.86	13 of 14
66794	leucine metabolism	92.31	12 of 13
66794	Entner Doudoroff pathway	90	9 of 10
66794	valine metabolism	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	gluconeogenesis	87.5	7 of 8
66794	isoleucine metabolism	87.5	7 of 8
66794	peptidoglycan biosynthesis	86.67	13 of 15
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	glutathione metabolism	85.71	12 of 14
66794	ubiquinone biosynthesis	85.71	6 of 7
66794	urea cycle	84.62	11 of 13
66794	phenylalanine metabolism	84.62	11 of 13
66794	NAD metabolism	83.33	15 of 18
66794	selenocysteine biosynthesis	83.33	5 of 6
66794	glycolysis	82.35	14 of 17
66794	tryptophan metabolism	81.58	31 of 38
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	glycogen metabolism	80	4 of 5
66794	propionate fermentation	80	8 of 10
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	flavin biosynthesis	80	12 of 15
66794	factor 420 biosynthesis	80	4 of 5
66794	histidine metabolism	79.31	23 of 29
66794	glutamate and glutamine metabolism	78.57	22 of 28
66794	heme metabolism	78.57	11 of 14
66794	d-mannose degradation	77.78	7 of 9
66794	methionine metabolism	76.92	20 of 26
66794	vitamin B1 metabolism	76.92	10 of 13
66794	sulfopterin metabolism	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	arginine metabolism	75	18 of 24
66794	lipid metabolism	74.19	23 of 31
66794	proline metabolism	72.73	8 of 11
66794	metabolism of disaccharids	72.73	8 of 11
66794	alanine metabolism	72.41	21 of 29
66794	purine metabolism	72.34	68 of 94
66794	aclacinomycin biosynthesis	71.43	5 of 7
66794	tyrosine metabolism	71.43	10 of 14
66794	tetrahydrofolate metabolism	71.43	10 of 14
66794	oxidative phosphorylation	70.33	64 of 91
66794	myo-inositol biosynthesis	70	7 of 10
66794	lysine metabolism	69.05	29 of 42
66794	pyrimidine metabolism	68.89	31 of 45
66794	cyanate degradation	66.67	2 of 3
66794	enterobactin biosynthesis	66.67	2 of 3
66794	cysteine metabolism	66.67	12 of 18
66794	3-phenylpropionate degradation	66.67	10 of 15
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	non-pathway related	65.79	25 of 38
66794	isoprenoid biosynthesis	65.38	17 of 26
66794	phenol degradation	65	13 of 20
66794	citric acid cycle	64.29	9 of 14
66794	degradation of pentoses	64.29	18 of 28
66794	d-xylose degradation	63.64	7 of 11
66794	carotenoid biosynthesis	63.64	14 of 22
66794	degradation of sugar alcohols	62.5	10 of 16
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	ketogluconate metabolism	62.5	5 of 8
66794	phosphatidylethanolamine bioynthesis	61.54	8 of 13
66794	degradation of sugar acids	60	15 of 25
66794	arachidonate biosynthesis	60	3 of 5
66794	glycine metabolism	60	6 of 10
66794	3-chlorocatechol degradation	60	3 of 5
66794	androgen and estrogen metabolism	56.25	9 of 16
66794	4-hydroxymandelate degradation	55.56	5 of 9
66794	nitrate assimilation	55.56	5 of 9
66794	cholesterol biosynthesis	54.55	6 of 11
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	phenylmercury acetate degradation	50	1 of 2
66794	degradation of hexoses	50	9 of 18
66794	coenzyme M biosynthesis	50	5 of 10
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	quinate degradation	50	1 of 2
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	lactate fermentation	50	2 of 4
66794	toluene degradation	50	2 of 4
66794	CMP-KDO biosynthesis	50	2 of 4
66794	cyclohexanol degradation	50	2 of 4
66794	bile acid biosynthesis, neutral pathway	47.06	8 of 17
66794	sulfate reduction	46.15	6 of 13
66794	vitamin B6 metabolism	45.45	5 of 11
66794	lipid A biosynthesis	44.44	4 of 9
66794	polyamine pathway	43.48	10 of 23
66794	propanol degradation	42.86	3 of 7
66794	vitamin B12 metabolism	41.18	14 of 34
66794	glycine betaine biosynthesis	40	2 of 5
66794	elloramycin biosynthesis	40	2 of 5
66794	vitamin K metabolism	40	2 of 5
66794	D-cycloserine biosynthesis	40	2 of 5
66794	hydrogen production	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	gallate degradation	40	2 of 5
66794	carnitine metabolism	37.5	3 of 8
66794	ascorbate metabolism	36.36	8 of 22
66794	dolichyl-diphosphooligosaccharide biosynthesis	36.36	4 of 11
66794	arachidonic acid metabolism	33.33	6 of 18
66794	IAA biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	4-hydroxyphenylacetate degradation	30	3 of 10
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	vitamin E metabolism	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4
66794	allantoin degradation	22.22	2 of 9
66794	chlorophyll metabolism	22.22	4 of 18

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
19662	not determinedn.d.	+	+	+	-	+	-	-	-	-	+	-	+	+	-	+	-	+	-	-
119027	-	-	+	+	-	+	-	-	+	-	-	-	+	+	-	+	-	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Built environment	-
#Environmental	#Terrestrial	#Geologic

Isolation

@ref	Sample type	Geographic location	Continent
11722	sandstone of Linnaeus Terrace (1600 m)	Transantarctic Mountains	Australia and Oceania
67770	Antarctic sandstone rock
119027	Environment, Sandstone Linnaeus Terrace

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
11722	1	Risk group (German classification) According to TRBA 466
19662	1	Risk group (German classification) According to TRBA 466
119027	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM799418v1 assembly for Micromonospora endolithica DSM 44398	contig	GCA_007994185	230091.5	2585427558	230091	75.26
67770	ASM362659v1 assembly for Micromonospora endolithica JCM 12677	scaffold	GCA_003626595	230091.4	8118068526	230091	67.79

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Micromonospora endolithica 16S rRNA gene, type strain DSM 44398T	AJ560635	1477		230091

GC content

@ref	GC-content (mol%)	Method
11722	70.1	thermal denaturation, midpoint method (Tm)
67770	70.06	thermal denaturation, midpoint method (Tm)
67770	72.45	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Micromonospora endolithica JCM 12677
NCBI: GCA_003626595

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	95.40	no
125439	motility	BacteriaNetⓘ	no	91.30	no
125439	gram_stain	BacteriaNetⓘ	positive	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Micromonospora endolithica strain DSM 44398
PATRIC: 230091.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.75	no
125438	anaerobic	anaerobicⓘ	no	95.86	yes
125438	spore-forming	spore-formingⓘ	yes	90.77	no
125438	aerobic	aerobicⓘ	yes	85.91	yes
125438	thermophilic	thermophileⓘ	no	92.50	yes
125438	flagellated	motile2+ⓘ	no	89.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Molecular, chemical and biological screening of soil actinomycete isolates in seeking bioactive peptide metabolites.	Hamedi J, Imanparast S, Mohammadipanah F.	Iran J Microbiol		2015
	Micromonospora cathayae sp. nov., isolated from the rhizosphere soil of Cathaya argyrophylla.	Long PL, Fu L, Xiao Y, Gao J.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006332	2024
Phylogeny	Micromonospora thermarum sp. nov., an actinobacterium isolated from hot spring soil.	Pansomsuay R, Duangupama T, Pittayakhajonwut P, Intaraudom C, Suriyachadkun C, He YW, Tanasupawat S, Thawai C.	Arch Microbiol	10.1007/s00203-023-03475-2	2023
Phylogeny	Micromonospora fulva sp. nov., isolated from forest soil.	Lee HJ, Whang KS	Int J Syst Evol Microbiol	10.1099/ijsem.0.001858	2017
Phylogeny	Micromonospora terminaliae sp. nov., an endophytic actinobacterium isolated from the surface-sterilized stem of the medicinal plant Terminalia mucronata.	Kaewkla O, Thamchaipinet A, Franco CMM	Int J Syst Evol Microbiol	10.1099/ijsem.0.001600	2017
Phylogeny	Cryptoendolithic actinomycetes from antarctic sandstone rock samples: Micromonospora endolithica sp. nov. and two isolates related to Micromonospora coerulea Jensen 1932.	Hirsch P, Mevs U, Kroppenstedt RM, Schumann P, Stackebrandt E	Syst Appl Microbiol	10.1078/072320204322881781	2004

References

#11722	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44398
#19662	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#36434	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#119027	Collection of Institut Pasteur ; Curators of the CIP; CIP 108382
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Micromonospora endolithica (DSM 44398, CIP 108382, IFAM AA-459)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_007994185

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media