Name: Micromonospora matsumotoensis DSM 44100
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7980

Type strain:

Species: Micromonospora matsumotoensis

Culture col. no.: DSM 44100, ATCC 49364, FERM BP-1196, IFO 14550, NBRC 14550, NRRL B-16490, JCM 9104, CGMCC 4.5527, CIP 106812, IMSNU 22003, KCTC 9354, VKM Ac-2009

Strain history: IFO 14550 <-- K. Asano 6393-C.

NCBI tax ID(s): 121616 (species)

Section

Micromonospora matsumotoensis DSM 44100 is a mesophilic bacterium that was isolated from woodland soil.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Micromonospora*
	Species	**Micromonospora matsumotoensis**
	Full Scientific Name (PNU)	Micromonospora matsumotoensis corrig. (Asano et al. 1989) Lee et al. 2000

	Synonym	Catellatospora matsumotoensis
	Synonym	Catellatospora matsumotoense
	Synonym	Micromonospora matsumotoense

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %93.08

Multimedia content

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Intellectual property rights:

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Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium composition

expand / minimize

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Culture medium

MEDIUM 116 - for Streptomyces, Nocardia, Streptosporangium and Mycobacterium chlorophenolicum

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

N-Z-AMINE-MEDIUM (DSMZ Medium 554)

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Culture medium growth

[Ref.: #11396]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #11396]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #11396]	growth	28 °C
[Ref.: #36433]	growth	30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #11396]	Temperature range	mesophilic
[Ref.: #36433]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %99.999

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Observation

quinones: MK-10(H₆), MK-10(H₈), MK-10(H₄)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11396]	Sample type/isolated from	woodland soil
[Ref.: #11396]	Geographic location (country and/or sea, region)	Nagano, Matsumoto
[Ref.: #11396]	Country	Japan
[Ref.: #11396]	Country ISO 3 Code	JPN
[Ref.: #11396]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Matsumoto, Nagano Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Micromonospora matsumotoense strain IMSNU 22003T 16S ribosomal RNA gene, partial sequence	AF152109	1506	ENA	121616 tax ID	*
[Ref.: #20218]	Micromonospora matsumotoense axC10 16S ribosomal RNA gene, partial sequence	AF311998	455	ENA	121616 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Micromonospora matsumotoense DSM 44100	GCA_900091525	scaffold	GenBank	121616 tax ID
[Ref.: #66792]	Micromonospora matsumotoense strain DSM 44100	121616.4	wgs	PATRIC	121616 tax ID	*
[Ref.: #66792]	Micromonospora matsumotoense DSM 44100	2622736591	draft	JGI IMG/M	121616 tax ID	*

[Ref.: #67770]	GC-content	71 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	72.27 mol%	genome sequence analysis
[Ref.: #67770]	GC-content	72.9 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Micromonospora matsumotoense DSM 44100 NCBI: GCA_900091525.1
[Ref.: #69480]	gram-positive	yes	100	yes
[Ref.: #69480]	spore-forming	yes	99.999	no
[Ref.: #69480]	anaerobic	no	99.543	no
[Ref.: #69480]	thermophile	no	97.164	yes
[Ref.: #69480]	motile	no	93.08	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Micromonospora matsumotoense DSM 44100 NCBI: GCA_900091525.1
[Ref.: #69481]	spore-forming	yes	100	no

Availability in culture collections External links

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Culture collection no.

DSM 44100, ATCC 49364, FERM BP-1196, IFO 14550, NBRC 14550, NRRL B-16490, JCM 9104, CGMCC 4.5527, CIP 106812, IMSNU 22003, KCTC 9354, VKM Ac-2009

[Ref.: #20218]

Associated Passport(s) in StrainInfo

114198, 114195, 169214, 114196, 335686, 114201

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Micromonospora fulva sp. nov., isolated from forest soil.	Lee HJ, Whang KS	Int J Syst Evol Microbiol	10.1099/ijsem.0.001858	2017	*
Phylogeny	Micromonospora vulcania sp. nov., isolated from volcanic sediment.	Jia F, Liu C, Zhou S, Li J, Shen Y, Guan X, Guo S, Gao M, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-015-0591-3	2015	*
Phylogeny	Micromonospora nickelidurans sp. nov., isolated from soil from a nickel-mining site.	Lin YB, Fan MC, Guo YQ, Di XH, Dong DH, Zhang X, Wei GH	Int J Syst Evol Microbiol	10.1099/ijsem.0.000623	2015	*
Phylogeny	Micromonospora maoerensis sp. nov., isolated from a Chinese pine forest soil.	Li C, Liu C, Zhao J, Zhang Y, Gao R, Zhang X, Yao M, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-013-0096-x	2013	*
Phylogeny	Micromonospora wenchangensis sp. nov., isolated from mangrove soil.	Ren J, Li L, Wei B, Tang YL, Deng ZX, Sun M, Hong K	Int J Syst Evol Microbiol	10.1099/ijs.0.045476-0	2012	*

References

#11396

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44100

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#36433 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Micromonospora matsumotoense DSM 44100

Micromonospora matsumotoense DSM 44100

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