Name: Couchioplanes caeruleus DSM 43634
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7867

Type strain:

Species: Couchioplanes caeruleus

Culture col. no.: DSM 43634, ATCC 33937, DSM 1037, IFO 13939, IMET 9248, JCM 3195, KCC A-0195, NRRL 5325, SCC 1014, BCRC 13339, IMSNU 20023, IMSNU 22159, KCCM 12131, KCTC 9531, NBRC 13939, NCIMB 12727, VKM Ac-1257

Strain history: KCC A-0195 <-- NRRL 5325 <-- Schering Corp.; SCC 1014.

NCBI tax ID(s): 56438 (species)

SI-ID 125572

ATCC 33937, IFO 13939, NRRL 5325, DSM 43634, DSM 1037, IMET 9248, JCM 3195, CCRC 13339, NCIMB 12727, VKM Ac-1257, KCTC 9531, NBRC 13939, BCRC 13339

Other strains from Couchioplanes caeruleus

C. caeruleus STI40619(IMET), JCM 4159, IPV 307

Section

Couchioplanes caeruleus DSM 43634 is a spore-forming, mesophilic, Gram-positive bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production
Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Couchioplanes*
	Species	**Couchioplanes caeruleus**
	Full Scientific Name (LPSN)	Couchioplanes caeruleus (Horan and Brodsky 1986) Tamura et al. 1994

Synonym

Actinoplanes caeruleus

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #11200]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #11200]

Culture medium growth

[Ref.: #11200]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #11200]

Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

[Ref.: #11200]

Culture medium growth

[Ref.: #11200]

Culture medium link

Medium recipe at MediaDive

[Ref.: #11200]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #11200]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #11200]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %95
[Ref.: #69480]	Ability of spore formation	yes Confidence in %99.545

[Ref.: #11200]	Name of produced compound	antifungal antibiotics Sch 16656 and 67-121 complex
[Ref.: #67770]	Name of produced compound	Antibiotic Sch 16656

[Ref.: #67770]

Observation

quinones: MK-9(H₄), MK-9(H₆)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11200]	Sample type/isolated from	soil

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Bristol Cone Park, CA
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence D85479 (>99% sequence identity) for Couchioplanes caeruleus from Microbeatlas

Aquatic Samples
Soil Samples	4
Animal Samples
Plant Samples
Total Samples	4

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #11200]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Catenuloplanes caeruleus IFO13939 gene for 16S rRNA, partial sequence	D14645	1265	ENA	56427 tax ID	*
[Ref.: #20218]	Couchioplanes caeruleus gene for 16S ribosomal RNA, partial sequence	D85479	1409	ENA	56438 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Couchioplanes caeruleus subsp. caeruleus DSM 43634	GCA_001884705	contig	GenBank	56427 tax ID
[Ref.: #67770]	Couchioplanes caeruleus DSM 43634	GCA_003751945	contig	GenBank	56438 tax ID
[Ref.: #66792]	Couchioplanes caeruleus strain DSM 43634	56438.3	wgs	PATRIC	56438 tax ID	*
[Ref.: #66792]	Couchioplanes caeruleus subsp. caeruleus strain DSM 43634	56427.3	wgs	PATRIC	56427 tax ID	*
[Ref.: #66792]	Couchioplanes caeruleus DSM 43634	2784132177	draft	JGI IMG/M	56438 tax ID	*
[Ref.: #66792]	Couchioplanes caeruleus DSM 43634	2856602953	draft	JGI IMG/M	56438 tax ID	*

[Ref.: #67770]

GC-content

69.9 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Couchioplanes caeruleus subsp. caeruleus strain DSM 43634 PATRIC: 56427.3
[Ref.: #69481]	spore-forming	yes	95	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Couchioplanes caeruleus strain DSM 43634 PATRIC: 56438.3
[Ref.: #69480]	gram-positive	yes	89.786	no
[Ref.: #69480]	anaerobic	no	98.948	no
[Ref.: #69480]	halophile	no	96.517	no
[Ref.: #69480]	spore-forming	yes	92.622	no
[Ref.: #69480]	glucose-util	yes	92.222	no
[Ref.: #69480]	thermophile	no	97.716	yes
[Ref.: #69480]	flagellated	no	89.035	no
[Ref.: #69480]	motile	yes	60.316	no
[Ref.: #69480]	aerobic	yes	92.606	no
[Ref.: #69480]	glucose-ferment	no	91.544	no

Availability in culture collections External links

[Ref.: #11200]

Culture collection no.

DSM 43634, ATCC 33937, DSM 1037, IFO 13939, IMET 9248, JCM 3195, KCC A-0195, NRRL 5325, SCC 1014, BCRC 13339, IMSNU 20023, IMSNU 22159, KCCM 12131, KCTC 9531, NBRC 13939, NCIMB 12727, VKM Ac-1257

[Ref.: #77303]

SI-ID 125572

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	New insights into polyene macrolide biosynthesis in Couchioplanes caeruleus.	Sheehan J, Murphy CD, Caffrey P	Mol Biosyst	10.1039/c7mb00112f	2017	*
Phylogeny	A new genus of the order Actinomycetales, Couchioplanes gen. nov., with descriptions of Couchioplanes caeruleus (Horan and Brodsky 1986) comb. nov. and Couchioplanes caeruleus subsp. azureus subsp. nov.	Tamura T, Nakagaito Y, Nishii T, Hasegawa T, Stackebrandt E, Yokota A	Int J Syst Bacteriol	10.1099/00207713-44-2-193	1994	*

References

#11200

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43634

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77303

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID125572.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Couchioplanes caeruleus subsp. caeruleus in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Couchioplanes caeruleus subsp. caeruleus strain DSM 43634

Couchioplanes caeruleus strain DSM 43634

Change proposal

Change proposal