Actinoplanes abujensis (DSM 45518, KCTC 19984, NRRL B-24835)

Name: Actinoplanes abujensis (DSM 45518, KCTC 19984, NRRL B-24835)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7847

Type strain

Strain Designation A4029

Culture col. no. DSM 45518 KCTC 19984 NRRL B-24835 A4029 NBRC 110796 1 more

NCBI tax ID(s) 882441

Special Collections DSMZ JCM KCTC Literature strains

History <- N. Sahin, Ondokuz Mayis University, Turkey; A4029 KCTC 19984 <-- N. Sahin A4029. <- N Sahin, Ondokuz Mayis Univ., Turkey

Links

Actinoplanes abujensis A4029 is an aerobe, mesophilic, Gram-positive prokaryote that was isolated from arid soil.

Gram-positive aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 400419

KCTC 19984,DSM 45518

@ref 20215

Last LPSN update 2026-02-09 11:19:34

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micromonosporales

Family Micromonosporaceae

Genus Actinoplanes

Species Actinoplanes abujensis

Full scientific name Actinoplanes abujensis Sazak et al. 2012

Synonyms (1)

Paractinoplanes abujensis

Morphology

Cell morphology

@ref	Gram stain	Confidence
30255	positive
67771	positive
125439	positive	99.7

Pigmentation

30255

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
17494	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
17494	CZAPEK PEPTONE AGAR (DSMZ Medium 83)	Medium recipe at MediaDive	Name: CZAPEK PEPTONE AGAR (DSMZ Medium 83) Composition: Sucrose 30.0 g/l Agar 20.0 g/l Peptone 5.0 g/l NaNO3 3.0 g/l Yeast extract 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 0.5 g/l KCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Distilled water
17494	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
17494	positive	growth	28	mesophilic
30255	positive	growth	20-37
30255	positive	optimum	25-30	mesophilic
67770	positive	growth	28	mesophilic
67771	positive	growth	28	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
30255	positive	optimum	7
30255	positive	growth	05-09	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
30255	aerobe
67771	aerobe
125439	obligate aerobe	99.3

Spore formation

@ref	Spore formation	Confidence
125439		90.8

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30255	NaCl	positive	growth	0-3 %

Observation

@ref	Observation
67770	quinones: MK-9(H₄), MK-9(H₆)
67771	quinones: MK-9(H4)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30255	17057 ChEBI	cellobiose	+	carbon source
30255	4853 ChEBI	esculin	+	hydrolysis
30255	17234 ChEBI	glucose	+	carbon source
30255	17306 ChEBI	maltose	+	carbon source
30255	37684 ChEBI	mannose	+	carbon source
30255	17632 ChEBI	nitrate	+	reduction

Enzymes

@ref	Value	Activity	Ec
30255	acid phosphatase	+	3.1.3.2
30255	alkaline phosphatase	+	3.1.3.1
30255	alpha-galactosidase	+	3.2.1.22
30255	catalase	+	1.11.1.6
30255	gelatinase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Condition	#Xerophilic	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
17494	arid soil	Abuja	Nigeria	NGA	Africa
67770	Arid soil	Abuja	Nigeria	NGA	Africa
67771	From arid soil	Abuja	Nigeria	NGA	Africa

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17494	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1420489v1 assembly for Paractinoplanes abujensis DSM 45518	contig	GCA_014204895	882441.3	2870584755	882441	76.88
66792	ASM1686199v1 assembly for Paractinoplanes abujensis NBRC 110796	contig	GCA_016861995	882441.4	8068342891	882441	51.72

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
17494	Actinoplanes abujensis strain A4029 16S ribosomal RNA gene, partial sequence	HQ157185	1490		882441

GC content

@ref	GC-content (mol%)	Method
17494	70.2	fluorimetric
30255	70.2
67770	70.2	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Actinoplanes abujensis NBRC 110796
NCBI: GCA_016861995

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	90.80	no
125439	motility	BacteriaNetⓘ	no	85.50	no
125439	gram_stain	BacteriaNetⓘ	positive	99.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Actinoplanes abujensis strain DSM 45518
PATRIC: 882441.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.21	yes
125438	anaerobic	anaerobicⓘ	no	94.91	yes
125438	aerobic	aerobicⓘ	yes	89.18	yes
125438	spore-forming	spore-formingⓘ	yes	88.42	no
125438	thermophilic	thermophileⓘ	no	94.50	yes
125438	flagellated	motile2+ⓘ	no	60.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinoplanes sediminis sp. nov., isolated from marine sediment.	Qu Z, Bao XD, Xie QY, Zhao YX, Yan B, Dai HF, Chen HQ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002451	2017
Phylogeny	Actinoplanes bogoriensis sp. nov., a novel actinomycete isolated from leaf litter.	Nurkanto A, Lisdiyanti P, Hamada M, Ratnakomala S, Shibata C, Tamura T	J Antibiot (Tokyo)	10.1038/ja.2015.81	2015
Phylogeny	Actinoplanes abujensis sp. nov., isolated from Nigerian arid soil.	Sazak A, Sahin N, Camas M	Int J Syst Evol Microbiol	10.1099/ijs.0.031872-0	2011

References

#17494	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45518
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26597	IJSEM 960 2012 ( DOI 10.1099/ijs.0.031872-0 , PubMed 21669926 )
#30255	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26597
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Actinoplanes abujensis (DSM 45518, KCTC 19984, NRRL B-24835)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014204895

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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