Name: Actinoplanes capillaceus K95-5561
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7837

Type strain:

Species: Actinoplanes capillaceus

Strain Designation: K95-5561

Culture col. no.: DSM 44859, IFO 16408, JCM 10268, NBRC 16408, NCIMB 14344

Strain history: S. ?mura K95-5561.

NCBI tax ID(s): 76756 (species)

SI-ID 62220

IFO 16408, JCM 10268, NBRC 16408, DSM 44859

Other strains from Actinoplanes capillaceus

A. capillaceus 71-C10, DSM 46148, AS 4.1011, CCRC ...
A. capillaceus SF000696(FSU),
A. capillaceus SF000866(FSU),
A. capillaceus SF000867(FSU),
A. capillaceus JCM 3329, BCRC 13640, CGMCC 4.1154, ...
A. capillaceus JCM 3330, BCRC 13641, CGMCC 4.1155, ...

Section

Actinoplanes capillaceus K95-5561 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from soil.

Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Actinoplanes*
	Species	**Actinoplanes capillaceus**
	Full Scientific Name (LPSN)	Actinoplanes capillaceus Matsumoto et al. 2001

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12146]

Culture medium

N-Z-AMINE-MEDIUM (DSMZ Medium 554)

[Ref.: #12146]

Culture medium growth

[Ref.: #12146]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12146]

Culture medium composition

expand / minimize

[Ref.: #12146]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #12146]

Culture medium growth

[Ref.: #12146]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12146]

Culture medium composition

expand / minimize

[Ref.: #12146]

Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

[Ref.: #12146]

Culture medium growth

[Ref.: #12146]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12146]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #12146]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #12146]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #67770]

Observation

quinones: MK-9(H₄), MK-9(H₆), MK-10(H₄)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12146]	Sample type/isolated from	soil
[Ref.: #12146]	Geographic location (country and/or sea, region)	Saitama Prefecture
[Ref.: #12146]	Country	Japan
[Ref.: #12146]	Country ISO 3 Code	JPN
[Ref.: #12146]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Sayama City, Saitama Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB013495 (>99% sequence identity) for Actinoplanes from Microbeatlas

Aquatic Samples	6
Soil Samples	12
Animal Samples	9
Plant Samples	3
Total Samples	30

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12146]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Actinoplanes capillaceus gene for 16S rRNA, partial sequence	AB013495	1457	ENA	76756 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Actinoplanes capillaceus NBRC 16408	GCA_016862055	contig	GenBank	76756 tax ID	*
[Ref.: #66792]	Actinoplanes capillaceus strain NBRC 16408	76756.3	wgs	PATRIC	76756 tax ID	*

[Ref.: #67770]

GC-content

71.4 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Actinoplanes capillaceus strain NBRC 16408 PATRIC: 76756.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Actinoplanes capillaceus strain NBRC 16408 PATRIC: 76756.3
[Ref.: #69480]	motile	yes	66.333	no
[Ref.: #69480]	flagellated	no	88.043	no
[Ref.: #69480]	gram-positive	yes	87.914	no
[Ref.: #69480]	anaerobic	no	98.713	no
[Ref.: #69480]	halophile	no	93.054	no
[Ref.: #69480]	spore-forming	yes	91.255	no
[Ref.: #69480]	glucose-util	yes	89.071	no
[Ref.: #69480]	aerobic	yes	91.051	no
[Ref.: #69480]	thermophile	no	98.932	yes
[Ref.: #69480]	glucose-ferment	no	88.438	no

Availability in culture collections External links

[Ref.: #12146]

Culture collection no.

DSM 44859, IFO 16408, JCM 10268, NBRC 16408, NCIMB 14344

[Ref.: #77274]

SI-ID 62220

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinoplanes flavus sp. nov., a novel cellulase-producing actinobacterium isolated from coconut palm rhizosphere soil.	Luo X, Sun X, Huang Z, He C, Zhao J, Xiang W, Song J, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.004990	2021	*
Phylogeny	Actinoplanes hulinensis sp. nov., a novel actinomycete isolated from soybean root (Glycine max (L.) Merr).	Shen Y, Liu C, Wang X, Zhao J, Jia F, Zhang Y, Wang L, Yang D, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-012-9809-9	2012	*
Phylogeny	Actinoplanes capillaceus sp. nov., a new species of the genus Actinoplanes.	Matsumoto A, Takahashi Y, Kudo T, Seino A, Iwai Y, Omura S	Antonie Van Leeuwenhoek	10.1023/a:1026530110874	2000	*

References

#12146

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44859

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77274

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID62220.1 )

* These data were automatically processed and therefore are not curated

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Actinoplanes capillaceus strain NBRC 16408

Actinoplanes capillaceus strain NBRC 16408

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