Actinoplanes campanulatus (DSM 44859, IFO 16408, JCM 10268)

Name: Actinoplanes campanulatus (DSM 44859, IFO 16408, JCM 10268)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7837

Type strain

Strain Designation K95-5561

Culture col. no. DSM 44859 IFO 16408 JCM 10268 NBRC 16408 K95-5561 1 more

NCBI tax ID(s) 113559

Special Collections DSMZ JCM

History DSMZ <- JCM <- S. Omura; K95-5561 JCM <-- S. ?mura K95-5561.

Links

Actinoplanes campanulatus K95-5561 is a bacterium that was isolated from soil.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 62220

IFO 16408,JCM 10268,NBRC 16408,DSM 44859

@ref 20215

Last LPSN update 2026-05-29 08:26:44

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micromonosporales

Family Micromonosporaceae

Genus Actinoplanes

Species Actinoplanes campanulatus

Full scientific name Actinoplanes campanulatus (Couch 1963) Stackebrandt and Kroppenstedt 1988

Synonyms (3)

"Ampullaria campanulata"
Actinoplanes capillaceus
Ampullariella campanulata

BacDive ID	Other strains from **Actinoplanes campanulatus** (1)	Type strain
7801	A. campanulatus UNCC 65, DSM 43148, ATCC 15348, CBS 190.64, ... (type strain)

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	positive	90.652
125439		94.927
125439	positive	99.537

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
12146	N-Z-AMINE-MEDIUM (DSMZ Medium 554)	Medium recipe at MediaDive	Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water
12146	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
12146	GPHF-MEDIUM (DSMZ Medium 553)	Medium recipe at MediaDive	Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
12146	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	97.743

Observation

67770

Observationquinones: MK-9(H₄), MK-9(H₆), MK-10(H₄)

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
12146	soil	Saitama Prefecture	Japan	JPN	Asia
67770	Soil	Sayama City, Saitama Pref.	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB013495 (>99% sequence identity) for Actinoplanes from Microbeatlas

Aquatic Samples	6
Soil Samples	12
Animal Samples	9
Plant Samples	3
Total Samples	30

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
12146	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1686205v1 assembly for Actinoplanes campanulatus NBRC 16408	contig	GCA_016862055	76756.3	8068282243	76756	28.49

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Actinoplanes capillaceus gene for 16S rRNA, partial sequence	AB013495	1457		76756

GC content

@ref	GC-content (mol%)	Method
67770	71.4	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1686205v1 assembly for Actinoplanes campanulatus NBRC 16408
BV-BRC: 76756.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.74	no
125439	gram_stain	BacteriaNetⓘ	positive	99.54	no
125439	motility	BacteriaNetⓘ	no	94.93	no
125439	spore_formation	BacteriaNetⓘ	yes	89.13	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Actinoplanes capillaceus strain NBRC 16408
PATRIC: 76756.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.65	no
125438	anaerobic	anaerobicⓘ	no	92.54	no
125438	aerobic	aerobicⓘ	yes	86.91	no
125438	spore-forming	spore-formingⓘ	yes	86.63	no
125438	thermophilic	thermophileⓘ	no	95.25	yes
125438	flagellated	motile2+ⓘ	no	60.83	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinoplanes flavus sp. nov., a novel cellulase-producing actinobacterium isolated from coconut palm rhizosphere soil.	Luo X, Sun X, Huang Z, He C, Zhao J, Xiang W, Song J, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.004990	2021
Phylogeny	Actinoplanes hulinensis sp. nov., a novel actinomycete isolated from soybean root (Glycine max (L.) Merr).	Shen Y, Liu C, Wang X, Zhao J, Jia F, Zhang Y, Wang L, Yang D, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-012-9809-9	2012
Phylogeny	Actinoplanes capillaceus sp. nov., a new species of the genus Actinoplanes.	Matsumoto A, Takahashi Y, Kudo T, Seino A, Iwai Y, Omura S	Antonie Van Leeuwenhoek	10.1023/a:1026530110874	2000

References

#12146	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44859
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Actinoplanes campanulatus (DSM 44859, IFO 16408, JCM 10268)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_016862055

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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