Name: Actinoplanes nipponensis FD 24834
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 7820

Type strain:

Species: Actinoplanes nipponensis

Strain Designation: FD 24834, FH 2241

Culture col. no.: DSM 43867, ATCC 31145, IFO 14063, JCM 3264, KCTC 9594, NBRC 14063, KY 11349, CGMCC 4.5497, HUT 6551

Strain history: KCC A-0264 <-- Kyowa Hakko Kogyo Co., Ltd.; KY 11349 <-- ATCC 31145 <-- Chas. Pfizer & Co.; FD 24834.

NCBI tax ID(s): 135950 (species)

Special Collections

Other strains from Actinoplanes nipponensis

Section

Actinoplanes nipponensis FD 24834 is a spore-forming bacterium that was isolated from soil.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Actinoplanes*
	Species	**Actinoplanes nipponensis**
	Full Scientific Name (LPSN)	Actinoplanes nipponensis Wink et al. 2014

Information on culture and growth conditions Culture and growth conditions

[Ref.: #11348]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #11348]

Culture medium growth

[Ref.: #11348]

Culture medium link

Medium recipe at MediaDive

[Ref.: #11348]

Culture medium composition

expand / minimize

[Ref.: #11348]

Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

[Ref.: #11348]

Culture medium growth

[Ref.: #11348]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #11348]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

yes Confidence in %100

[Ref.: #11348]	Name of produced compound	antibiotic 41012
[Ref.: #67770]	Name of produced compound	Lipopeptide antibiotic 41,012

[Ref.: #67770]

Observation

quinones: MK-9(H₆), MK-9(H₄), MK-9(H₂)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11348]	Sample type/isolated from	soil
[Ref.: #11348]	Country	Japan
[Ref.: #11348]	Country ISO 3 Code	JPN
[Ref.: #11348]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB047498 (>99% sequence identity) for Actinoplanes from Microbeatlas

Aquatic Samples	15
Soil Samples	509
Animal Samples	42
Plant Samples	69
Total Samples	635

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #11348]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #11348]	Actinoplanes nipponensis gene for 16S rRNA, partial sequence	AB047498	1474	GenBank ENA	135950 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Actinoplanes nipponensis NBRC 14063	GCA_016862275	contig	GenBank ENA	135950 tax ID	*
[Ref.: #66792]	Actinoplanes nipponensis strain NBRC 14063	135950.3	wgs	PATRIC	135950 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Actinoplanes nipponensis strain NBRC 14063 PATRIC: 135950.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Actinoplanes nipponensis strain NBRC 14063 PATRIC: 135950.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	89.245	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	94.843	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	89.727	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	84.654	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	93.909	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	62.333	no

Availability in culture collections External links

[Ref.: #11348]

Culture collection no.

DSM 43867, ATCC 31145, IFO 14063, JCM 3264, KCTC 9594, NBRC 14063, KY 11349, CGMCC 4.5497, HUT 6551

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinoplanes lichenis sp. nov., isolated from lichen.	Phongsopitanun W, Matsumoto A, Inahashi Y, Kudo T, Mori M, Shiomi K, Takahashi Y, Tanasupawat S	Int J Syst Evol Microbiol	10.1099/ijsem.0.000746	2015	*
Phylogeny	Emended description of Actinoplanes friuliensis and description of Actinoplanes nipponensis sp. nov., antibiotic-producing species of the genus Actinoplanes.	Wink J, Schumann P, Spoer C, Eisenbarth K, Glaeser SP, Martin K, Kampfer P	Int J Syst Evol Microbiol	10.1099/ijs.0.057836-0	2013	*

References

#11348

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43867

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Actinoplanes nipponensis in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Actinoplanes nipponensis strain NBRC 14063

Actinoplanes nipponensis strain NBRC 14063

Change proposal

Change proposal