Actinoplanes philippinensis (DSM 43019, ATCC 12427, BCC 60401)

Name: Actinoplanes philippinensis (DSM 43019, ATCC 12427, BCC 60401)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7810

Type strain

Strain Designation UNCC P-15

Culture col. no. DSM 43019 ATCC 12427 BCC 60401 CBS 107.58 IAM 14278 21 more

NCBI tax ID(s) 35752

Special Collections DSMZ JCM KCTC JMRC

History DSMZ <- KCC <- T. Frumai, MCRL <- T. Yamaguchi, IAM <- J.N. Couch, UNCC, P-15 JCM <-- KCC A-0001 <-- T. Furumai <-- T. Yamaguchi <-- J. N. Couch P-15.

Links

Actinoplanes philippinensis UNCC P-15 is a bacterium that was isolated from soil from a rice paddy.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 92805

TBRC 2206,ATCC 12427,DSM 43019,IAM 14278,IFO 13878,IMET 9218,JCM 3001,NRRL 2506,CCRC 11620,KCTC 9068,NCIMB 12646,VKM Ac-842,CBS 107.58,CECT 3286,NRRL B-2506,NBRC 13878,HAMBI 1927,BCRC 11620,KACC 20021,ATCC1227,CGMCC 4.1479

@ref 20215

Last LPSN update 2026-05-29 08:26:44

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micromonosporales

Family Micromonosporaceae

Genus Actinoplanes

Species Actinoplanes philippinensis

Full scientific name Actinoplanes philippinensis Couch 1950 (Approved Lists 1980)

BacDive ID	Other strains from **Actinoplanes philippinensis** (3)	Type strain
100072	A. philippinensis STI09062(IMET), 1110-005,
100073	A. philippinensis STI09067(IMET), 1110-017,
164196	A. philippinensis JCM 3211, IFM 1262, IFO 13940, NBRC 13940, ...

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125439		93.968
125439		99.428	positive

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
10691	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
10691	STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)	Medium recipe at MediaDive	Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water
10691	BHI MEDIUM (DSMZ Medium 215)	Medium recipe at MediaDive	Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
10691	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.15

Spore formation

@ref	Spore formation	Confidence
125439		91.377

Observation

67770

Observationquinones: MK-9(H₄), MK-10(H₄), MK-9(H₄)

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	starch degradation	100	10 of 10
66794	cardiolipin biosynthesis	100	7 of 7
66794	1,4-dihydroxy-6-naphthoate biosynthesis	100	6 of 6
66794	ppGpp biosynthesis	100	4 of 4
66794	sulfopterin metabolism	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	coenzyme A metabolism	100	4 of 4
66794	adipate degradation	100	2 of 2
66794	formaldehyde oxidation	100	3 of 3
66794	kanosamine biosynthesis II	100	2 of 2
66794	resorcinol degradation	100	2 of 2
66794	valine metabolism	100	9 of 9
66794	molybdenum cofactor biosynthesis	100	9 of 9
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	myo-inositol biosynthesis	100	10 of 10
66794	L-lactaldehyde degradation	100	3 of 3
66794	biotin biosynthesis	100	4 of 4
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	cellulose degradation	100	5 of 5
66794	aerobactin biosynthesis	100	1 of 1
66794	taurine degradation	100	1 of 1
66794	palmitate biosynthesis	100	22 of 22
66794	threonine metabolism	100	10 of 10
66794	ethanol fermentation	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	acetate fermentation	100	4 of 4
66794	suberin monomers biosynthesis	100	2 of 2
66794	4-hydroxymandelate degradation	100	9 of 9
66794	NAD metabolism	94.44	17 of 18
66794	photosynthesis	92.86	13 of 14
66794	leucine metabolism	92.31	12 of 13
66794	phenylalanine metabolism	92.31	12 of 13
66794	pentose phosphate pathway	90.91	10 of 11
66794	Entner Doudoroff pathway	90	9 of 10
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	degradation of sugar acids	88	22 of 25
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	gluconeogenesis	87.5	7 of 8
66794	isoleucine metabolism	87.5	7 of 8
66794	peptidoglycan biosynthesis	86.67	13 of 15
66794	flavin biosynthesis	86.67	13 of 15
66794	purine metabolism	86.17	81 of 94
66794	ubiquinone biosynthesis	85.71	6 of 7
66794	heme metabolism	85.71	12 of 14
66794	glutathione metabolism	85.71	12 of 14
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	glutamate and glutamine metabolism	85.71	24 of 28
66794	propanol degradation	85.71	6 of 7
66794	citric acid cycle	85.71	12 of 14
66794	vitamin B12 metabolism	85.29	29 of 34
66794	urea cycle	84.62	11 of 13
66794	glycolate and glyoxylate degradation	83.33	5 of 6
66794	selenocysteine biosynthesis	83.33	5 of 6
66794	alanine metabolism	82.76	24 of 29
66794	metabolism of disaccharids	81.82	9 of 11
66794	proline metabolism	81.82	9 of 11
66794	methionine metabolism	80.77	21 of 26
66794	gallate degradation	80	4 of 5
66794	pyrimidine metabolism	80	36 of 45
66794	glycine betaine biosynthesis	80	4 of 5
66794	propionate fermentation	80	8 of 10
66794	3-chlorocatechol degradation	80	4 of 5
66794	factor 420 biosynthesis	80	4 of 5
66794	glycogen metabolism	80	4 of 5
66794	histidine metabolism	79.31	23 of 29
66794	tryptophan metabolism	78.95	30 of 38
66794	tetrahydrofolate metabolism	78.57	11 of 14
66794	degradation of hexoses	77.78	14 of 18
66794	allantoin degradation	77.78	7 of 9
66794	d-mannose degradation	77.78	7 of 9
66794	vitamin B1 metabolism	76.92	10 of 13
66794	glycolysis	76.47	13 of 17
66794	oxidative phosphorylation	75.82	69 of 91
66794	degradation of pentoses	75	21 of 28
66794	butanoate fermentation	75	3 of 4
66794	dTDPLrhamnose biosynthesis	75	6 of 8
66794	CMP-KDO biosynthesis	75	3 of 4
66794	cyclohexanol degradation	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	3-phenylpropionate degradation	73.33	11 of 15
66794	aclacinomycin biosynthesis	71.43	5 of 7
66794	4-hydroxyphenylacetate degradation	70	7 of 10
66794	lysine metabolism	69.05	29 of 42
66794	androgen and estrogen metabolism	68.75	11 of 16
66794	degradation of sugar alcohols	68.75	11 of 16
66794	lipid metabolism	67.74	21 of 31
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	arginine metabolism	66.67	16 of 24
66794	cysteine metabolism	66.67	12 of 18
66794	non-pathway related	65.79	25 of 38
66794	phenol degradation	65	13 of 20
66794	tyrosine metabolism	64.29	9 of 14
66794	d-xylose degradation	63.64	7 of 11
66794	ketogluconate metabolism	62.5	5 of 8
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	phosphatidylethanolamine bioynthesis	61.54	8 of 13
66794	polyamine pathway	60.87	14 of 23
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	arachidonate biosynthesis	60	3 of 5
66794	vitamin K metabolism	60	3 of 5
66794	lipoate biosynthesis	60	3 of 5
66794	carotenoid biosynthesis	59.09	13 of 22
66794	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
66794	nitrate assimilation	55.56	5 of 9
66794	daunorubicin biosynthesis	55.56	5 of 9
66794	phenylpropanoid biosynthesis	53.85	7 of 13
66794	sulfate reduction	53.85	7 of 13
66794	chlorophyll metabolism	50	9 of 18
66794	lactate fermentation	50	2 of 4
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	ribulose monophosphate pathway	50	1 of 2
66794	ascorbate metabolism	50	11 of 22
66794	toluene degradation	50	2 of 4
66794	coenzyme M biosynthesis	50	5 of 10
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	grixazone biosynthesis	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	glycine metabolism	50	5 of 10
66794	quinate degradation	50	1 of 2
66794	bile acid biosynthesis, neutral pathway	47.06	8 of 17
66794	vitamin B6 metabolism	45.45	5 of 11
66794	arachidonic acid metabolism	44.44	8 of 18
66794	lipid A biosynthesis	44.44	4 of 9
66794	D-cycloserine biosynthesis	40	2 of 5
66794	bacilysin biosynthesis	40	2 of 5
66794	ethylmalonyl-CoA pathway	40	2 of 5
66794	carnitine metabolism	37.5	3 of 8
66794	enterobactin biosynthesis	33.33	1 of 3
66794	methane metabolism	33.33	1 of 3
66794	vitamin D3 metabolism	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	sulfoquinovose degradation	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	mevalonate metabolism	28.57	2 of 7
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	alginate biosynthesis	25	1 of 4
66794	vitamin E metabolism	25	1 of 4
66794	methanogenesis from CO2	25	3 of 12
66794	catecholamine biosynthesis	25	1 of 4

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Condition	#Anoxic (anaerobic)	-

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
10691	soil from a rice paddy	Philippines	PHL	Asia
67770	Rice paddy soil	Philippines	PHL	Asia

Taxonmaps

69479

Global distribution of 16S sequence U58525 (>99% sequence identity) for Actinoplanes philippinensis from Microbeatlas

Aquatic Samples	0
Soil Samples	5
Animal Samples	6
Plant Samples	4
Total Samples	15

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
10691	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2675903218 annotated assembly for Actinoplanes philippinensis DSM 43019	contig	GCA_900113015	35752.4	2675903218	35752	63.21
66792	ASM1686233v1 assembly for Actinoplanes philippinensis NBRC 13878	contig	GCA_016862335	35752.5	8117710718	35752	45.52

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Actinoplanes philippinensis 16S ribosomal RNA gene sequence	U58525	1411	35752
20218	A.philippinensis gene for 16S rRNA	X72864	1316	35752
20218	A.philippinensis 16S rRNA gene	X93187	1442	35752
20218	Actinoplanes philippinensis gene for 16S ribosomal RNA, partial sequence	D85474	1471	35752

GC content

@ref	GC-content (mol%)	Method
67770	72.1
67770	71.4	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: IMG-taxon 2675903218 annotated assembly for Actinoplanes philippinensis DSM 43019
NCBI: GCA_900113015

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.15	no
125439	gram_stain	BacteriaNetⓘ	positive	99.43	no
125439	motility	BacteriaNetⓘ	no	93.97	no
125439	spore_formation	BacteriaNetⓘ	yes	91.38	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Actinoplanes philippinensis strain DSM 43019
PATRIC: 35752.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.97	no
125438	anaerobic	anaerobicⓘ	no	95.77	no
125438	spore-forming	spore-formingⓘ	yes	85.87	no
125438	aerobic	aerobicⓘ	yes	87.32	no
125438	thermophilic	thermophileⓘ	no	95.75	yes
125438	flagellated	motile2+ⓘ	no	63.33	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Phocoenamicins B and C, New Antibacterial Spirotetronates Isolated from a Marine Micromonospora sp.	Perez-Bonilla M, Oves-Costales D, de la Cruz M, Kokkini M, Martin J, Vicente F, Genilloud O, Reyes F.	Mar Drugs	10.3390/md16030095	2018
Phylogeny	Real-time PCR for the detection and quantification of geodermatophilaceae from stone samples and identification of new members of the genus blastococcus.	Salazar O, Valverde A, Genilloud O.	Appl Environ Microbiol	10.1128/aem.72.1.346-352.2006	2006
Enzymology	Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients.	Heuer H, Krsek M, Baker P, Smalla K, Wellington EM.	Appl Environ Microbiol	10.1128/aem.63.8.3233-3241.1997	1997
Enzymology	Effects of T4 lysozyme release from transgenic potato roots on bacterial rhizosphere communities are negligible relative to natural factors.	Heuer H, Kroppenstedt RM, Lottmann J, Berg G, Smalla K.	Appl Environ Microbiol	10.1128/aem.68.3.1325-1335.2002	2002
Pathogenicity	Streptomyces umbrella toxin particles block hyphal growth of competing species.	Zhao Q, Bertolli S, Park YJ, Tan Y, Cutler KJ, Srinivas P, Asfahl KL, Fonesca-Garcia C, Gallagher LA, Li Y, Wang Y, Coleman-Derr D, DiMaio F, Zhang D, Peterson SB, Veesler D, Mougous JD.	Nature	10.1038/s41586-024-07298-z	2024
	Isolation, structure, and antibacterial activity of philipimycin, a thiazolyl peptide discovered from Actinoplanes philippinensis MA7347.	Zhang C, Occi J, Masurekar P, Barrett JF, Zink DL, Smith S, Onishi R, Ha S, Salazar O, Genilloud O, Basilio A, Vicente F, Gill C, Hickey EJ, Dorso K, Motyl M, Singh SB.	J Am Chem Soc	10.1021/ja803183u	2008
Genetics	Chromosome topology and genome size of selected actinomycetes species.	Redenbach M, Scheel J, Schmidt U.	Antonie Van Leeuwenhoek	10.1023/a:1010289326752	2000
	Aspergillus terreus Inhibits Growth and Induces Morphological Abnormalities in Pythium aphanidermatum and Suppresses Pythium-Induced Damping-Off of Cucumber.	Halo BA, Al-Yahyai RA, Al-Sadi AM.	Front Microbiol	10.3389/fmicb.2018.00095	2018
	The potential for the biological control of cavity-spot disease of carrots, caused by Pythium coloratum, by streptomycete and non-streptomycete actinomycetes.	El-Tarabily KA, Hardy GESJ, Sivasithamparam K, Hussein AM, Kurtboke DI.	New Phytol	10.1046/j.1469-8137.1997.00856.x	1997
	[Poly(galactosylglycerophosphate) with mannosyl side residues from the cell wall of Actinoplanes phillipinensis VKM Ac-647].	Ianushkene NA, Shashkov AS, Naumova IB, Streshinskaia GM.	Bioorg Khim		1989
	Effects of a new antibiotic, isohematinic acid, on the resistance of mice to experimental infections.	Shiraishi A, Katayama T, Matsuda T, Itoh Y, Haneishi T.	Microbiol Immunol	10.1111/j.1348-0421.1987.tb03108.x	1987
Phylogeny	Rapid cataloging of ribonuclease T1 resistant oligonucleotides from ribosomal RNAs for phylogenetic studies.	Stackebrandt E, Ludwig W, Schleifer KH, Gross HJ.	J Mol Evol	10.1007/bf01732760	1981
Metabolism	Reassociation of deoxyribonucleic acids from Actinoplanes and other actinomycetes.	Farina G, Bradley SG.	J Bacteriol	10.1128/jb.102.1.30-35.1970	1970
	Abundances, identity, and growth state of actinobacteria in mountain lakes of different UV transparency.	Warnecke F, Sommaruga R, Sekar R, Hofer JS, Pernthaler J.	Appl Environ Microbiol	10.1128/aem.71.9.5551-5559.2005	2005
Genetics	Genome-Based Taxonomic Classification of the Phylum Actinobacteria.	Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M.	Front Microbiol	10.3389/fmicb.2018.02007	2018
Phylogeny	Actinoplanes sandaracinus sp. nov., a novel ligninase- producing and cellulose-degrading actinobacterium isolated from soil.	Wang Z, Xu Y, Zhou C, Sun X, Huang Z, He C, Yao S, Zhao J, Wang X, Song J, Xiang W.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006216	2024
Phylogeny	Actinoplanes sichuanensis sp. nov. and Actinoplanes xinjiangensis sp. nov.	Sun W, Dong GX, Zhang YQ, Wei YZ, Li QP, Yu LY, Klenk HP, Zhang YQ.	Int J Syst Evol Microbiol	10.1099/ijs.0.010561-0	2009
Phylogeny	Actinoplanes subglobosus sp. nov., isolated from mixed deciduous forest soil.	Ngaemthao W, Chunhametha S, Suriyachadkun C	Int J Syst Evol Microbiol	10.1099/ijsem.0.001440	2016

References

#10691	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43019
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20216	Curators of the JMRC: Jena Microbial Resource Collection (JMRC):
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Actinoplanes philippinensis (DSM 43019, ATCC 12427, BCC 60401)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900113015

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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