Name: Actinoplanes lobatus UNCC 72
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 7808

Type strain:

Species: Actinoplanes lobatus

Strain Designation: UNCC 72

Culture col. no.: DSM 43150, ATCC 15350, CBS 192.64, IFO 12513, KCC A-0061, NBRC 12513, JCM 3061, IFM 0126, IFM 1240, IMET 9246, IMSNU 22063, KCTC 9348, NCIMB 12888, NRRL B-3346, VKM Ac-676

Strain history: KCC A-0061 <-- CBS 192.64 <-- J. N. Couch UNCC 72.

NCBI tax ID(s): 113568 (species)

SI-ID 36343

ATCC 15350, DSM 43150, IFO 12513, JCM 3061, IMET 9246, NCIMB 12888, NRRL B-3346, VKM Ac-676, CBS 192.64, KCTC 9348, NBRC 12513, BCRC 16345, CCRC 16345

Special Collections

Section

Actinoplanes lobatus UNCC 72 is a spore-forming bacterium that was isolated from soil.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Actinoplanes*
	Species	**Actinoplanes lobatus**
	Full Scientific Name (LPSN)	Actinoplanes lobatus (Couch 1963) Stackebrandt and Kroppenstedt 1988

	Synonym	"Ampullaria* lobata"*
	Synonym	Ampullariella lobata

Information on morphological and physiological properties Morphology

[Ref.: #19548]	Colony color	Yellow orange
[Ref.: #19548]	Incubation period	10-14 days
[Ref.: #19548]	Cultivation medium used	ISP 2

[Ref.: #19548]	Colony color	Yellow orange
[Ref.: #19548]	Incubation period	10-14 days
[Ref.: #19548]	Cultivation medium used	ISP 3

[Ref.: #19548]	Colony color	Yellow orange
[Ref.: #19548]	Incubation period	10-14 days
[Ref.: #19548]	Cultivation medium used	ISP 4

[Ref.: #19548]	Colony color	Yellow orange
[Ref.: #19548]	Incubation period	10-14 days
[Ref.: #19548]	Cultivation medium used	ISP 5

[Ref.: #19548]	Colony color	Yellow orange
[Ref.: #19548]	Incubation period	10-14 days
[Ref.: #19548]	Cultivation medium used	ISP 6

[Ref.: #19548]	Colony color	Yellow orange
[Ref.: #19548]	Incubation period	10-14 days
[Ref.: #19548]	Cultivation medium used	ISP 7

[Ref.: #19548]	Multicellular complex forming ability	no
[Ref.: #19548]	Medium Name (multicellularity)	ISP 2

[Ref.: #19548]	Multicellular complex forming ability	no
[Ref.: #19548]	Medium Name (multicellularity)	ISP 3

[Ref.: #19548]	Multicellular complex forming ability	no
[Ref.: #19548]	Medium Name (multicellularity)	ISP 4

[Ref.: #19548]	Multicellular complex forming ability	no
[Ref.: #19548]	Medium Name (multicellularity)	ISP 5

[Ref.: #19548]	Multicellular complex forming ability	no
[Ref.: #19548]	Medium Name (multicellularity)	ISP 6

[Ref.: #19548]	Multicellular complex forming ability	no
[Ref.: #19548]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

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Culture medium

ISP 2

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 3

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 4

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Culture medium growth

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Culture medium

ISP 5

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Culture medium growth

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Culture medium

ISP 6

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Culture medium

ISP 7

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Culture medium

CZAPEK PEPTONE AGAR (DSMZ Medium 83)

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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		Temperature
[Ref.: #10820]	growth	28 °C
[Ref.: #19548]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #19548]	Spore description	Spore surface: smooth, sporangia: +
[Ref.: #19548]	Type of spore	spore
[Ref.: #19548]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #19548]		NaCl		maximum	2.5	%

[Ref.: #67770]

Observation

quinones: MK-9(H₄), MK-10(H₄) , MK-9(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19548]	401	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10820]	Sample type/isolated from	soil

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Madison, WI
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB037006 (>99% sequence identity) for Actinoplanes from Microbeatlas

Aquatic Samples	2
Soil Samples	8
Animal Samples	2
Plant Samples	5
Total Samples	17

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19548]	Biosafety level	1	Risk group (German classification)
[Ref.: #10820]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Actinoplanes lobatus gene for 16S rRNA, partial sequence	AB037006	1472	GenBank ENA	113568 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Actinoplanes lobatus NBRC 12513	GCA_016862255	contig	GenBank ENA	113568 tax ID	*
[Ref.: #66792]	Actinoplanes lobatus DSM 43150	GCA_014205215	contig	GenBank ENA	113568 tax ID	*
[Ref.: #66792]	Actinoplanes lobatus JCM 3061	GCA_014647815	scaffold	GenBank ENA	113568 tax ID	*
[Ref.: #66792]	Actinoplanes lobatus strain DSM 43150	113568.3	wgs	PATRIC	113568 tax ID	*
[Ref.: #66792]	Actinoplanes lobatus strain JCM 3061	113568.4	wgs	PATRIC	113568 tax ID	*
[Ref.: #66792]	Actinoplanes lobatus strain NBRC 12513	113568.5	wgs	PATRIC	113568 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Actinoplanes lobatus JCM 3061 NCBI: GCA_014647815.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Actinoplanes lobatus JCM 3061 NCBI: GCA_014647815.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	88.854	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	89.259	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	86.547	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	87.525	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.244	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	62.333	no

Availability in culture collections External links

[Ref.: #10820]

Culture collection no.

DSM 43150, ATCC 15350, CBS 192.64, IFO 12513, KCC A-0061, NBRC 12513, JCM 3061, IFM 0126, IFM 1240, IMET 9246, IMSNU 22063, KCTC 9348, NCIMB 12888, NRRL B-3346, VKM Ac-676

[Ref.: #77250]

SI-ID 36343

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinoplanes flavus sp. nov., a novel cellulase-producing actinobacterium isolated from coconut palm rhizosphere soil.	Luo X, Sun X, Huang Z, He C, Zhao J, Xiang W, Song J, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.004990	2021	*
Phylogeny	Actinoplanes hulinensis sp. nov., a novel actinomycete isolated from soybean root (Glycine max (L.) Merr).	Shen Y, Liu C, Wang X, Zhao J, Jia F, Zhang Y, Wang L, Yang D, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-012-9809-9	2012	*
	A novel teichuronic acid, the major polymer from the cell wall of Actinoplanes lobatus VKM Ac-676(T.).	Shashkov AS, Streshinskaya GM, Tul'skaya EM, Kozlova YI, Senchenkova SN, Evtushenko LI	Carbohydr Res	10.1016/j.carres.2013.08.031	2013	*

References

#10820

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43150

#19548

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77250

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID36343.1 )

* These data were automatically processed and therefore are not curated

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Actinoplanes lobatus JCM 3061

Actinoplanes lobatus JCM 3061

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