Name: Actinoplanes globisporus SS/37
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7805

Type strain:

Species: Actinoplanes globisporus

Strain Designation: SS/37

Culture col. no.: DSM 43857, ATCC 23056, DSM 43894, IFO 13912, IMET 9263, JCM 3186, KCC A-0186, NBRC 13912, BCRC 13628, IFM 1259, IMSNU 20030, KCTC 9591, NCIMB 12638, TBRC 10999

Strain history: KCC A-0186 <-- ATCC 23056 <-- J. E. Thiemann SS/37.

NCBI tax ID(s): 1120949 (strain), 113565 (species)

SI-ID 88614

ATCC 23056, DSM 43857, DSM 43894, IFO 13912, IMET 9263, JCM 3186, CCRC 13628, NCIMB 12638, KCTC 9591, NBRC 13912, BCRC 13628

Other strains from Actinoplanes globisporus

A. globisporus 996-3, DSM 46643, IMET 9051
A. globisporus STH00319(ZIMET), HKI 0319

Section

Actinoplanes globisporus SS/37 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from soil.

Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Actinoplanes*
	Species	**Actinoplanes globisporus**
	Full Scientific Name (LPSN)	Actinoplanes globisporus (Thiemann 1967) Stackebrandt and Kroppenstedt 1988

Synonym

Amorphosporangium globisporum

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Multimedia content

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Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

BENNETT'S AGAR (DSMZ Medium 548)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #11339]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #11339]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #11339]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11339]	Sample type/isolated from	soil
[Ref.: #11339]	Geographic location (country and/or sea, region)	Como, Appiano Gentile
[Ref.: #11339]	Country	Italy
[Ref.: #11339]	Country ISO 3 Code	ITA
[Ref.: #11339]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Appiano Gentile, Como
[Ref.: #67770]	Country	Italy
[Ref.: #67770]	Country ISO 3 Code	ITA
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Actinoplanes globisporus gene for 16S rRNA, partial sequence	AB037003	1476	ENA	113565 tax ID	*
[Ref.: #20218]	Actinoplanes globisporus partial 16S rRNA gene, strain IMSNU 20030T	AJ277570	1452	ENA	113565 tax ID	*
[Ref.: #20218]	Actinoplanes globisporus gene for 16S ribosomal RNA, partial sequence	AB048219	1444	ENA	113565 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Actinoplanes globisporus DSM 43857	GCA_000379645	scaffold	GenBank	1120949 tax ID
[Ref.: #66792]	Actinoplanes globisporus DSM 43857	1120949.3	wgs	PATRIC	1120949 tax ID	*
[Ref.: #66792]	Actinoplanes globisporus DSM 43857	2515154017	draft	JGI IMG/M	1120949 tax ID	*

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GC-content

70.9 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Actinoplanes globisporus DSM 43857 DSM 43857 NCBI: GCA_000379645.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Actinoplanes globisporus DSM 43857 PATRIC: 1120949.3
[Ref.: #69480]	motile	yes	57.857	no
[Ref.: #69480]	flagellated	no	90.877	no
[Ref.: #69480]	gram-positive	yes	84.192	no
[Ref.: #69480]	anaerobic	no	98.469	no
[Ref.: #69480]	aerobic	yes	91.844	no
[Ref.: #69480]	halophile	no	96.662	no
[Ref.: #69480]	spore-forming	yes	87.335	no
[Ref.: #69480]	thermophile	no	99.384	no
[Ref.: #69480]	glucose-util	yes	90.566	no
[Ref.: #69480]	glucose-ferment	no	88.621	no

Availability in culture collections External links

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Culture collection no.

DSM 43857, ATCC 23056, DSM 43894, IFO 13912, IMET 9263, JCM 3186, KCC A-0186, NBRC 13912, BCRC 13628, IFM 1259, IMSNU 20030, KCTC 9591, NCIMB 12638, TBRC 10999

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SI-ID 88614

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Actinoplanes deserti sp. nov., isolated from a desert soil sample.	Habib N, Khan IU, Chu X, Xiao M, Li S, Fang BZ, Zhi XY, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-018-1121-x	2018	*
Phylogeny	Actinoplanes rhizophilus sp. nov., an actinomycete isolated from the rhizosphere of Sansevieria trifasciata Prain.	He H, Xing J, Liu C, Li C, Ma Z, Li J, Xiang W, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.000646	2015	*
Phylogeny	Actinoplanes rishiriensis sp. nov., a novel motile actinomycete isolated by rehydration and centrifugation method.	Yamamura H, Shimizu A, Nakagawa Y, Hamada M, Otoguro M, Tamura T, Hayakawa M	J Antibiot (Tokyo)	10.1038/ja.2012.8	2012	*

References

#11339

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43857

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77247

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID88614.1 )

* These data were automatically processed and therefore are not curated

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Actinoplanes globisporus DSM 43857 DSM 43857

Actinoplanes globisporus DSM 43857

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