Actinoplanes globisporus (DSM 43857, ATCC 23056, DSM 43894)

Name: Actinoplanes globisporus (DSM 43857, ATCC 23056, DSM 43894)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7805

Type strain

Strain Designation SS/37

Culture col. no. DSM 43857 ATCC 23056 DSM 43894 IFO 13912 IMET 9263 13 more

NCBI tax ID(s) 1120949 113565

Special Collections DSMZ JCM KCTC JMRC

History DSMZ <- JCM <- KCC <- ATCC <- J.E. Thiemann, SS/37 JCM <-- KCC A-0186 <-- ATCC 23056 <-- J. E. Thiemann SS/37.

Links

Actinoplanes globisporus SS/37 is a bacterium that was isolated from soil.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 88614

ATCC 23056,DSM 43857,DSM 43894,IFO 13912,IMET 9263,JCM 3186,CCRC 13628,NCIMB 12638,KCTC 9591,NBRC 13912,BCRC 13628

@ref 20215

Last LPSN update 2026-05-29 08:26:44

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micromonosporales

Family Micromonosporaceae

Genus Actinoplanes

Species Actinoplanes globisporus

Full scientific name Actinoplanes globisporus (Thiemann 1967) Stackebrandt and Kroppenstedt 1988

Synonyms (2)

Paractinoplanes globisporus
Amorphosporangium globisporum

BacDive ID	Other strains from **Actinoplanes globisporus** (4)	Type strain
7806	A. globisporus 996-3, DSM 46643, IMET 9051
100079	A. globisporus STI09051(IMET), 996-003,
100080	A. globisporus STI09052(IMET), 996-007,
100081	A. globisporus STI09085(IMET), 1032-007,

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125439		91.641
125439		99.408	positive

Multimedia

@ref:	11339
multimedia content:	DSM_43857.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_43857.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
11339	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
11339	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
11339	BENNETT'S AGAR (DSMZ Medium 548)	Medium recipe at MediaDive	Name: BENNETT'S AGAR (DSMZ Medium 548) Composition: Agar 15.0 g/l Glucose 10.0 g/l N-Z amine 2.0 g/l Yeast extract 1.0 g/l Beef extract 1.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
11339	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.347

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
11339	soil	Como, Appiano Gentile	Italy	ITA	Europe
67770	Soil	Appiano Gentile, Como	Italy	ITA	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
11339	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM37964v1 assembly for Paractinoplanes globisporus DSM 43857	scaffold	GCA_000379645	1120949.3	2515154017	1120949	63.46

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Actinoplanes globisporus gene for 16S rRNA, partial sequence	AB037003	1476	113565
20218	Actinoplanes globisporus partial 16S rRNA gene, strain IMSNU 20030T	AJ277570	1452	113565
20218	Actinoplanes globisporus gene for 16S ribosomal RNA, partial sequence	AB048219	1444	113565

GC content

@ref	GC-content (mol%)	Method
67770	70.9	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM37964v1 assembly for Paractinoplanes globisporus DSM 43857
NCBI: GCA_000379645

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.35	no
125439	gram_stain	BacteriaNetⓘ	positive	99.41	no
125439	motility	BacteriaNetⓘ	no	91.64	no
125439	spore_formation	BacteriaNetⓘ	yes	78.95	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Actinoplanes globisporus DSM 43857
PATRIC: 1120949.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	87.09	no
125438	anaerobic	anaerobicⓘ	no	91.27	no
125438	spore-forming	spore-formingⓘ	yes	88.09	no
125438	aerobic	aerobicⓘ	yes	89.84	no
125438	thermophilic	thermophileⓘ	no	95.00	yes
125438	flagellated	motile2+ⓘ	no	62.43	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Extending the Salinilactone Family.	Schlawis C, Harig T, Ehlers S, Guillen-Matus DG, Creamer KE, Jensen PR, Schulz S.	Chembiochem	10.1002/cbic.201900764	2020
Genetics	Distribution in microbial genomes of genes similar to lodA and goxA which encode a novel family of quinoproteins with amino acid oxidase activity.	Campillo-Brocal JC, Chacon-Verdu MD, Lucas-Elio P, Sanchez-Amat A.	BMC Genomics	10.1186/s12864-015-1455-y	2015
	Mapping the Surface Microbiome and Metabolome of Brown Seaweed Fucus vesiculosus by Amplicon Sequencing, Integrated Metabolomics and Imaging Techniques.	Parrot D, Blumel M, Utermann C, Chianese G, Krause S, Kovalev A, Gorb SN, Tasdemir D.	Sci Rep	10.1038/s41598-018-37914-8	2019
	Huanglongbing alters the structure and functional diversity of microbial communities associated with citrus rhizosphere.	Trivedi P, He Z, Van Nostrand JD, Albrigo G, Zhou J, Wang N.	ISME J	10.1038/ismej.2011.100	2012
Genetics	Genome-Based Taxonomic Classification of the Phylum Actinobacteria.	Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M.	Front Microbiol	10.3389/fmicb.2018.02007	2018
Phylogeny	Actinoplanes toevensis sp. nov. and Actinoplanes tereljensis sp. nov., isolated from Mongolian soil.	Ara I, Yamamura H, Tsetseg B, Daram D, Ando K.	Int J Syst Evol Microbiol	10.1099/ijs.0.009944-0	2010
Metabolism	Actinoplanes deserti sp. nov., isolated from a desert soil sample.	Habib N, Khan IU, Chu X, Xiao M, Li S, Fang BZ, Zhi XY, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-018-1121-x	2018
Phylogeny	Actinoplanes rhizophilus sp. nov., an actinomycete isolated from the rhizosphere of Sansevieria trifasciata Prain.	He H, Xing J, Liu C, Li C, Ma Z, Li J, Xiang W, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.000646	2015
Phylogeny	Actinoplanes rishiriensis sp. nov., a novel motile actinomycete isolated by rehydration and centrifugation method.	Yamamura H, Shimizu A, Nakagawa Y, Hamada M, Otoguro M, Tamura T, Hayakawa M	J Antibiot (Tokyo)	10.1038/ja.2012.8	2012

References

#11339	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43857
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20216	Curators of the JMRC: Jena Microbial Resource Collection (JMRC):
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Actinoplanes globisporus (DSM 43857, ATCC 23056, DSM 43894)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000379645

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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