Actinoplanes auranticolor (DSM 43031, ATCC 15330, CBS 189.64)

Name: Actinoplanes auranticolor (DSM 43031, ATCC 15330, CBS 189.64)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7798

Type strain

Strain Designation UNCC 253

Culture col. no. DSM 43031 ATCC 15330 CBS 189.64 IFO 12245 KCC A-0038 15 more

NCBI tax ID(s) 47988

Special Collections DSMZ JCM KCTC Wink compendium

History <- KCC <- H. Lechevalier <- ATCC <- J.N. Couch, UNCC, 253 KCC A-0038 <-- H. A. Lechevalier <-- ATCC 15330 <-- J. N. Couch UNCC 253 <-- C. E. Miller.

Links

Actinoplanes auranticolor UNCC 253 is a spore-forming bacterium that was isolated from pasture soil.

spore-forming genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 36336

ATCC 15330,DSM 43031,IFO 12245,JCM 3038,CCRC 13631,IMET 9034,NCIMB 10172,NRRL B-3343,VKM Ac-648,VKM Ac-675,CBS 189.64,KCTC 9117,NRRL 3343,NBRC 12245,HAMBI 1975,BCRC 13631,NCIB 10172

@ref 20215

Last LPSN update 2026-02-09 11:19:33

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micromonosporales

Family Micromonosporaceae

Genus Actinoplanes

Species Actinoplanes auranticolor

Full scientific name Actinoplanes auranticolor (Couch 1963) Stackebrandt and Kroppenstedt 1988

Synonyms (2)

Amorphoplanes auranticolor
Amorphosporangium auranticolor

BacDive ID	Other strains from **Actinoplanes auranticolor** (2)	Type strain
128602	A. auranticolor STH00287(ZIMET), HKI 0287
164260	A. auranticolor JCM 3245, ATCC 31011, BCRC 12065, IFO 13992, ...

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	99.7
125438	positive	90.17

Colony morphology

@ref	Colony color	Incubation period	Medium used
19538	Dahlia yellow	10-14 days	ISP 2
19538	Dahlia yellow	10-14 days	ISP 3
19538	Orange yellow	10-14 days	ISP 4
19538	Orange yellow	10-14 days	ISP 5
19538	Orange yellow	10-14 days	ISP 6
19538	Orange yellow	10-14 days	ISP 7

Multicellular morphology

@ref	Forms multicellular complex	Medium name
19538		ISP 2
19538		ISP 3
19538		ISP 4
19538		ISP 5
19538		ISP 6
19538		ISP 7

Multimedia

@ref:	10701
multimedia content:	DSM_43031.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_43031.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
19538	ISP 2		Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
19538	ISP 3		Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
19538	ISP 4		Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
19538	ISP 5		Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
19538	ISP 6		Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
19538	ISP 7		Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
10701	CZAPEK PEPTONE AGAR (DSMZ Medium 83)	Medium recipe at MediaDive	Name: CZAPEK PEPTONE AGAR (DSMZ Medium 83) Composition: Sucrose 30.0 g/l Agar 20.0 g/l Peptone 5.0 g/l NaNO3 3.0 g/l Yeast extract 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 0.5 g/l KCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Distilled water
10701	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
10701	positive	growth	28
19538	positive	optimum	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.6

Spore formation

@ref	Spore description	Type of spore	Spore formation	Confidence
19538	spore surface: smooth, sporangia: +	spore
125438				90.781

Halophily

@ref	Salt	Growth	Tested relation	Concentration
19538	NaCl	positive	maximum	5 %

Observation

67770

Observationquinones: MK-9(H₄), MK-9(H₆)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
19538	22599 ChEBI	arabinose	+
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
19538	62968 ChEBI	cellulose	-
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
19538	28757 ChEBI	fructose	+
68368	5291 ChEBI	gelatin	+	hydrolysis	from API 20E
19538	17234 ChEBI	glucose	+
68368	25094 ChEBI	lysine	-	degradation	from API 20E
19538	29864 ChEBI	mannitol	+
19538	17268 ChEBI	myo-inositol	-
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
19538	16634 ChEBI	raffinose	-
19538	26546 ChEBI	rhamnose	+
19538	17992 ChEBI	sucrose	+
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E
19538	18222 ChEBI	xylose	-

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	-		from API 20E
68368	35581 ChEBI	indole		-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68368	gelatinase	+		from API 20E
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68368	urease	-	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
19538	+	-	-	-	-	-	-	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Engineered	#Agriculture	#Meadow
#Environmental	#Terrestrial	#Grassland

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
10701	pasture soil	Nevada, near Dunphy	USA	USA	North America
67770	Soil	NV	USA	USA	North America

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
19538	1	Risk group (German classification) According to TRBA 466
10701	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM3953990v1 assembly for Actinoplanes auranticolor JCM 3038	scaffold	GCA_039539905			47988	48.5
66792	ASM1833265v1 assembly for Actinoplanes auranticolor NBRC 12245	contig	GCA_018332655	47988.3	3002529215	47988	44.73

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Actinoplanes auranticolor gene for 16S ribosomal RNA, partial sequence, strain: IFO12245	D85471	1469		47988
20218	Actinoplanes auranticolor 16S ribosomal RNA gene sequence	U58526	1411		47988

GC content

67770

GC-content (mol%)71.4

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Actinoplanes auranticolor NBRC 12245
NCBI: GCA_018332655

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	82.60	no
125439	motility	BacteriaNetⓘ	no	85.10	no
125439	gram_stain	BacteriaNetⓘ	positive	99.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Actinoplanes auranticolor strain NBRC 12245
PATRIC: 47988.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.17	no
125438	anaerobic	anaerobicⓘ	no	95.32	no
125438	spore-forming	spore-formingⓘ	yes	90.78	no
125438	aerobic	aerobicⓘ	yes	86.85	no
125438	thermophilic	thermophileⓘ	no	93.50	yes
125438	flagellated	motile2+ⓘ	no	63.33	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Molecular detection of Mycobacterium bovis and Mycobacterium bovis BCG (Pasteur) in soil.	Young JS, Gormley E, Wellington EM.	Appl Environ Microbiol	10.1128/aem.71.4.1946-1952.2005	2005
Enzymology	Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients.	Heuer H, Krsek M, Baker P, Smalla K, Wellington EM.	Appl Environ Microbiol	10.1128/aem.63.8.3233-3241.1997	1997
	Multiplex strand displacement amplification (SDA) and detection of DNA sequences from Mycobacterium tuberculosis and other mycobacteria.	Walker GT, Nadeau JG, Spears PA, Schram JL, Nycz CM, Shank DD.	Nucleic Acids Res	10.1093/nar/22.13.2670	1994
	Thermal gradient gel electrophoresis analysis of bioprotection from pollutant shocks in the activated sludge microbial community.	Eichner CA, Erb RW, Timmis KN, Wagner-Dobler I.	Appl Environ Microbiol	10.1128/aem.65.1.102-109.1999	1999
Phylogeny	Actinoplanes sichuanensis sp. nov. and Actinoplanes xinjiangensis sp. nov.	Sun W, Dong GX, Zhang YQ, Wei YZ, Li QP, Yu LY, Klenk HP, Zhang YQ.	Int J Syst Evol Microbiol	10.1099/ijs.0.010561-0	2009
Phylogeny	Actinoplanes hulinensis sp. nov., a novel actinomycete isolated from soybean root (Glycine max (L.) Merr).	Shen Y, Liu C, Wang X, Zhao J, Jia F, Zhang Y, Wang L, Yang D, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-012-9809-9	2012

References

#10701	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43031
#19538	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Actinoplanes auranticolor (DSM 43031, ATCC 15330, CBS 189.64)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20E

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_039539905

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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