Name: Actinocatenispora thailandica TT2-10
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7795

Type strain:

Species: Actinocatenispora thailandica

Strain Designation: TT2-10

Culture col. no.: DSM 44816, JCM 12343, PCU 235, BCRC 16831, CGMCC 4.5560, CIP 109347, NBRC 105041, NCIMB 14320

Strain history: C. Thawai TT2-10.

NCBI tax ID(s): 227318 (species)

Other strains from Actinocatenispora thailandica

A. thailandica JCM 12344, PCU 236

Section

Actinocatenispora thailandica TT2-10 is an aerobe, spore-forming, mesophilic bacterium that was isolated from soil.

Gram-positive
rod-shaped
spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Actinocatenispora*
	Species	**Actinocatenispora thailandica**
	Full Scientific Name (LPSN)	Actinocatenispora thailandica Thawai et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #31699]	Gram stain	positive
[Ref.: #31699]	Cell length	0.5-1 µm
[Ref.: #31699]	Cell width	0.3-0.4 µm
[Ref.: #31699]	Cell shape	rod-shaped
[Ref.: #31699]	Motility	no

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #20127]	Colony color	Melon yellow (1028)
[Ref.: #20127]	Incubation period	10-14 days
[Ref.: #20127]	Cultivation medium used	ISP 2

[Ref.: #20127]	Colony color	Melon yellow (1028)
[Ref.: #20127]	Incubation period	10-14 days
[Ref.: #20127]	Cultivation medium used	ISP 3

[Ref.: #20127]	Colony color	Melon yellow (1028)
[Ref.: #20127]	Incubation period	10-14 days
[Ref.: #20127]	Cultivation medium used	ISP 4

[Ref.: #20127]	Colony color	Melon yellow (1028)
[Ref.: #20127]	Incubation period	10-14 days
[Ref.: #20127]	Cultivation medium used	ISP 5

[Ref.: #20127]	Colony color	Melon yellow (1028)
[Ref.: #20127]	Incubation period	10-14 days
[Ref.: #20127]	Cultivation medium used	ISP 6

[Ref.: #20127]	Colony color	Melon yellow (1028)
[Ref.: #20127]	Incubation period	10-14 days
[Ref.: #20127]	Cultivation medium used	ISP 7

[Ref.: #31699]

Pigment production

yes

[Ref.: #20127]	Multicellular complex forming ability	no
[Ref.: #20127]	Medium Name (multicellularity)	ISP 2

[Ref.: #20127]	Multicellular complex forming ability	no
[Ref.: #20127]	Medium Name (multicellularity)	ISP 3

[Ref.: #20127]	Multicellular complex forming ability	no
[Ref.: #20127]	Medium Name (multicellularity)	ISP 4

[Ref.: #20127]	Multicellular complex forming ability	no
[Ref.: #20127]	Medium Name (multicellularity)	ISP 5

[Ref.: #20127]	Multicellular complex forming ability	no
[Ref.: #20127]	Medium Name (multicellularity)	ISP 6

[Ref.: #20127]	Multicellular complex forming ability	no
[Ref.: #20127]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12100]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

ISP2 MEDIUM (DSMZ Medium 987)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

ISP 2

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Culture medium growth

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Culture medium

ISP 3

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Culture medium growth

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Culture medium

ISP 4

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Culture medium growth

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Culture medium

ISP 5

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Culture medium

ISP 6

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Culture medium growth

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Culture medium

ISP 7

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Culture medium growth

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Culture medium

MEDIUM 116 - for Streptomyces, Nocardia, Streptosporangium and Mycobacterium chlorophenolicum

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Culture medium growth

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Culture medium composition

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Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

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Medium recipe at MediaDive

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Culture medium composition

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		Temperature
[Ref.: #12100]	growth	28 °C
[Ref.: #20127]	optimum	28 °C
[Ref.: #31699]	growth	25-40 °C
[Ref.: #31699]	optimum	25-30 °C
[Ref.: #37520]	growth	30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #12100]	Temperature range	mesophilic
[Ref.: #20127]	Temperature range	mesophilic
[Ref.: #31699]	Temperature range	mesophilic
[Ref.: #37520]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31699]			optimum	7
[Ref.: #31699]			growth	4.5-7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31699]

Oxygen tolerance

aerobe

[Ref.: #31699]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31699]		NaCl		growth	0-7	%
[Ref.: #31699]		NaCl		optimum	0-7	%

[Ref.: #31699]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-9(H₄), MK-9(H₆)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31699]	cellobiose ChEBI	+	carbon source
[Ref.: #31699]	glucose ChEBI	+	carbon source
[Ref.: #31699]	glycerol ChEBI	+	carbon source
[Ref.: #31699]	mannitol ChEBI	+	carbon source
[Ref.: #31699]	melibiose ChEBI	+	carbon source
[Ref.: #31699]	nitrate ChEBI	+	reduction
[Ref.: #31699]	raffinose ChEBI	+	carbon source
[Ref.: #31699]	salicin ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #31699]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #20127]	908	not determinedn.d.	+	+	+	+	+	+	-	+	+	+	+	+	+	-	+	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12100]	Sample type/isolated from	soil
[Ref.: #12100]	Geographic location (country and/or sea, region)	Pattalung Prefecture
[Ref.: #12100]	Country	Thailand
[Ref.: #12100]	Country ISO 3 Code	THA
[Ref.: #12100]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Peat swamp forest soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Pattaloong Province
[Ref.: #67770]	Country	Thailand
[Ref.: #67770]	Country ISO 3 Code	THA
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB107233 (>99% sequence identity) for Actinocatenispora from Microbeatlas

Aquatic Samples	438
Soil Samples	2874
Animal Samples	1016
Plant Samples	1028
Total Samples	5356

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12100]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #20127]	Biosafety level	1	German classification

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #12100]	Actinocatenispora thailandica gene for 16S rRNA, partial sequence, strain: TT2-10	AB107233	1444	ENA	227318 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Actinocatenispora thailandica NBRC 105041	GCA_016865425	complete	GenBank	227318 tax ID	*
[Ref.: #66792]	Actinocatenispora thailandica strain NBRC 105041	227318.3	complete	PATRIC	227318 tax ID	*

[Ref.: #12100]	GC-content	72 mol%
[Ref.: #67770]	GC-content	72.2 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Actinocatenispora thailandica NBRC 105041 NCBI: GCA_016865425.1
[Ref.: #69480]	spore-forming	yes	100	yes
[Ref.: #69480]	anaerobic	no	99.46	yes
[Ref.: #69480]	gram-positive	yes	100	yes
[Ref.: #69480]	thermophile	no	99.66	yes
[Ref.: #69480]	motile	no	87.06	yes

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Actinocatenispora thailandica NBRC 105041 NCBI: GCA_016865425.1
[Ref.: #69481]	spore-forming	yes	100	no

Availability in culture collections External links

[Ref.: #12100]

Culture collection no.

DSM 44816, JCM 12343, PCU 235, BCRC 16831, CGMCC 4.5560, CIP 109347, NBRC 105041, NCIMB 14320

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinocatenispora comari sp. nov., an endophytic actinomycete isolated from aerial parts of Comarum salesowianum.	Oyunbileg N, Iizaka Y, Hamada M, Davaapurev BO, Fukumoto A, Tsetseg B, Kato F, Tamura T, Batkhuu J, Anzai Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.004861	2021	*
Phylogeny	Actinocatenispora rupis sp. nov., isolated from cliff soil, and emended description of the genus Actinocatenispora.	Seo SH, Lee SD	Int J Syst Evol Microbiol	10.1099/ijs.0.012922-0	2009	*
Phylogeny	Actinocatenispora sera sp. nov., isolated by long-term culturing.	Matsumoto A, Takahashi Y, Fukumoto M, Omura S	Int J Syst Evol Microbiol	10.1099/ijs.0.65270-0	2007	*
Phylogeny	Actinocatenispora thailandica gen. nov., sp. nov., a new member of the family Micromonosporaceae.	Thawai C, Tanasupawat S, Itoh T, Kudo T	Int J Syst Evol Microbiol	10.1099/ijs.0.64081-0	2006	*

References

#12100

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44816

#20127

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31699

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27976 (see below)

#37520 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#27976

IJSEM 1789 2006 ( DOI 10.1099/ijs.0.64081-0 , PubMed 16902009 )

* These data were automatically processed and therefore are not curated

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Actinocatenispora thailandica NBRC 105041

Actinocatenispora thailandica NBRC 105041

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