Name: Enteractinococcus coprophilus DSM 24083
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7794

Type strain:

Species: Enteractinococcus coprophilus

Culture col. no.: DSM 24083, JCM 17352, YIM 100590

Strain history: S.-K. Tang and Y.-R. Cao YIM 100590.

NCBI tax ID(s): 1027633 (species)

SI-ID 397882

DSM 24083

Section

Enteractinococcus coprophilus DSM 24083 is a mesophilic, Gram-positive, coccus-shaped bacterium that was isolated from animal feces, Panthera tigris amoyensis.

coccus-shaped
Gram-positive
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Micrococcaceae*
	Genus	*Enteractinococcus*
	Species	**Enteractinococcus coprophilus**
	Full Scientific Name (LPSN)	Enteractinococcus coprophilus Cao et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30352]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #30352]	Cell width	1.1 µm

[Ref.: #30352]	Cell shape	coccus-shaped

[Ref.: #30352]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %94.556

[Ref.: #30352]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17485]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #17485]

Culture medium growth

[Ref.: #17485]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17485]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #17485]	growth	28 °C
[Ref.: #30352]	growth	10-37 °C
[Ref.: #30352]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #17485]	Temperature range	mesophilic
[Ref.: #30352]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30352]			optimum	8
[Ref.: #30352]			growth	07-11

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30352]		NaCl		growth	<11	%

[Ref.: #67770]

Observation

quinones: MK-7, MK-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30352]	acetate ChEBI	+	carbon source
[Ref.: #30352]	arginine ChEBI	+	carbon source
[Ref.: #30352]	aspartate ChEBI	+	carbon source
[Ref.: #30352]	citrate ChEBI	+	carbon source
[Ref.: #30352]	fructose ChEBI	+	carbon source
[Ref.: #30352]	fucose ChEBI	+	carbon source
[Ref.: #30352]	gluconate ChEBI	+	carbon source
[Ref.: #30352]	glucose ChEBI	+	carbon source
[Ref.: #30352]	glutamate ChEBI	+	carbon source
[Ref.: #30352]	glycerol ChEBI	+	carbon source
[Ref.: #30352]	inosine ChEBI	+	carbon source
[Ref.: #30352]	L-arabitol ChEBI	+	carbon source
[Ref.: #30352]	lactate ChEBI	+	carbon source
[Ref.: #30352]	malate ChEBI	+	carbon source
[Ref.: #30352]	mannitol ChEBI	+	carbon source
[Ref.: #30352]	mannose ChEBI	+	carbon source
[Ref.: #30352]	methyl D-glucoside ChEBI	+	carbon source
[Ref.: #30352]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #30352]	nitrate ChEBI	+	reduction
[Ref.: #30352]	propionate ChEBI	+	carbon source
[Ref.: #30352]	quinate ChEBI	+	carbon source
[Ref.: #30352]	raffinose ChEBI	+	carbon source
[Ref.: #30352]	rhamnose ChEBI	+	carbon source
[Ref.: #30352]	salicin ChEBI	+	carbon source
[Ref.: #30352]	serine ChEBI	+	carbon source
[Ref.: #30352]	sorbitol ChEBI	+	carbon source
[Ref.: #30352]	sucrose ChEBI	+	carbon source
[Ref.: #30352]	tween 40 ChEBI	+	carbon source
[Ref.: #30352]	xylitol ChEBI	+	carbon source
[Ref.: #30352]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30352]		catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17485]	Sample type/isolated from	animal feces, Panthera tigris amoyensis
[Ref.: #17485]	Host species	Panthera tigris amoyensis
[Ref.: #17485]	Geographic location (country and/or sea, region)	Yunnan province, Yunnan Wild Animal Park
[Ref.: #17485]	Country	China
[Ref.: #17485]	Country ISO 3 Code	CHN
[Ref.: #17485]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Tiger (Panthera tigris amoyensis) faeces from Yunnan Wild Animal Park
[Ref.: #67770]	Host species	Panthera tigris amoyensis
[Ref.: #67770]	Geographic location (country and/or sea, region)	Yunnan Province, south-west China
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Felidae (Cat)
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JF507603 (>99% sequence identity) for Enteractinococcus coprophilus subclade from Microbeatlas

Aquatic Samples	5
Soil Samples	27
Animal Samples	105
Plant Samples	13
Total Samples	150

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17485]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17485]	Enteractinicoccus coprophilus strain YIM 100590 16S ribosomal RNA gene, partial sequence	JF507603	1538	ENA	1027633 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Enteractinococcus coprophilus DSM 24083	GCA_006716305	contig	GenBank	1027633 tax ID
[Ref.: #66792]	Enteractinococcus coprophilus strain DSM 24083	1027633.3	wgs	PATRIC	1027633 tax ID	*
[Ref.: #66792]	Enteractinococcus coprophilus DSM 24083	2816332111	draft	JGI IMG/M	1027633 tax ID	*

[Ref.: #17485]	GC-content	56.2 mol%	high performance liquid chromatography (HPLC)
[Ref.: #30352]	GC-content	56.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Enteractinococcus coprophilus strain DSM 24083 PATRIC: 1027633.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Enteractinococcus coprophilus strain DSM 24083 PATRIC: 1027633.3
[Ref.: #69480]	motile	no	90.272	yes
[Ref.: #69480]	flagellated	no	98.072	no
[Ref.: #69480]	gram-positive	yes	87.113	no
[Ref.: #69480]	anaerobic	no	99.368	no
[Ref.: #69480]	aerobic	yes	93.641	no
[Ref.: #69480]	halophile	yes	73.342	yes
[Ref.: #69480]	spore-forming	no	94.037	no
[Ref.: #69480]	thermophile	no	95.012	yes
[Ref.: #69480]	glucose-util	yes	76.022	no
[Ref.: #69480]	glucose-ferment	no	91.93	no

Availability in culture collections External links

[Ref.: #17485]

Culture collection no.

DSM 24083, JCM 17352, YIM 100590

[Ref.: #77236]

SI-ID 397882

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Enteractinococcus lamae sp. nov. and Enteractinococcus viverrae sp. nov., isolated from animal faeces.	Chen X, Li GD, Li QY, Hu CJ, Qiu SM, Jiang Y, Jiang CL, Han L, Huang XS	Antonie Van Leeuwenhoek	10.1007/s10482-015-0603-3	2015	*
Phylogeny	Enteractinococcus coprophilus gen. nov., sp. nov., of the family Micrococcaceae, isolated from Panthera tigris amoyensis faeces, and transfer of Yaniella fodinae Dhanjal et al. 2011 to the genus Enteractinococcus as Enteractinococcus fodinae comb. nov.	Cao YR, Jiang Y, Jin RX, Han L, He WX, Li YL, Huang XS, Xue QH	Int J Syst Evol Microbiol	10.1099/ijs.0.034249-0	2012	*

References

#17485

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24083

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30352

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26693 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77236

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397882.1 )

#26693

IJSEM 2710 2012 ( DOI 10.1099/ijs.0.034249-0 , PubMed 22228667 )

* These data were automatically processed and therefore are not curated

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Enteractinococcus coprophilus strain DSM 24083

Enteractinococcus coprophilus strain DSM 24083

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