Name: Enteractinococcus fodinae G-5
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7793

Type strain:

Species: Enteractinococcus fodinae

Strain Designation: G-5, G5

Culture col. no.: DSM 22966, MTCC 9846, JCM 17931

Strain history: MTCC 9846 <-- S. Dhanjal G5.

NCBI tax ID(s): 684663 (species)

Section

Enteractinococcus fodinae G-5 is an aerobe, Gram-positive, coccus-shaped bacterium that was isolated from soil from a coal mine.

coccus-shaped
Gram-positive
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Micrococcaceae*
	Genus	*Enteractinococcus*
	Species	**Enteractinococcus fodinae**
	Full Scientific Name (LPSN)	Enteractinococcus fodinae (Dhanjal et al. 2011) Cao et al. 2012

Synonym

Yaniella fodinae

Information on morphological and physiological properties Morphology

[Ref.: #29778]	Gram stain	positive

[Ref.: #29778]	Cell shape	coccus-shaped

[Ref.: #29778]	Motility	no

[Ref.: #69234]	Colony color	Rape yellow (1021)
[Ref.: #69234]	Cultivation medium used	ISP 7

[Ref.: #69234]	Colony color	Rape yellow (1021)
[Ref.: #69234]	Cultivation medium used	suter without tyrosine

[Ref.: #69234]	Colony color	Signal yellow (1003)
[Ref.: #69234]	Cultivation medium used	ISP 6

[Ref.: #69234]	Colony color	Traffic yellow (1023)
[Ref.: #69234]	Cultivation medium used	ISP 2

[Ref.: #69234]	Colony color	Traffic yellow (1023)
[Ref.: #69234]	Cultivation medium used	ISP 3

[Ref.: #69234]	Colony color	Traffic yellow (1023)
[Ref.: #69234]	Cultivation medium used	ISP 5

[Ref.: #69234]	Colony color	Traffic yellow (1023)
[Ref.: #69234]	Cultivation medium used	suter with tyrosine

[Ref.: #69234]	Colony color	Zinc yellow (1018)
[Ref.: #69234]	Cultivation medium used	ISP 4

[Ref.: #29778]	Pigment production	yes
[Ref.: #69234]	Pigment production	no
[Ref.: #69234]	Pigment name	Melanin
[Ref.: #69234]	Pigment production	no
[Ref.: #69234]	Pigment name	soluble pigment

[Ref.: #69234]	Multicellular complex forming ability	no
[Ref.: #69234]	Multicellular complex name	Aerial mycelium
[Ref.: #69234]	Medium Name (multicellularity)	ISP 2

[Ref.: #69234]	Multicellular complex forming ability	no
[Ref.: #69234]	Multicellular complex name	Aerial mycelium
[Ref.: #69234]	Medium Name (multicellularity)	ISP 3

[Ref.: #69234]	Multicellular complex forming ability	no
[Ref.: #69234]	Multicellular complex name	Aerial mycelium
[Ref.: #69234]	Medium Name (multicellularity)	ISP 4

[Ref.: #69234]	Multicellular complex forming ability	no
[Ref.: #69234]	Multicellular complex name	Aerial mycelium
[Ref.: #69234]	Medium Name (multicellularity)	ISP 5

[Ref.: #69234]	Multicellular complex forming ability	no
[Ref.: #69234]	Multicellular complex name	Aerial mycelium
[Ref.: #69234]	Medium Name (multicellularity)	ISP 6

[Ref.: #69234]	Multicellular complex forming ability	no
[Ref.: #69234]	Multicellular complex name	Aerial mycelium
[Ref.: #69234]	Medium Name (multicellularity)	ISP 7

[Ref.: #69234]	Multicellular complex forming ability	no
[Ref.: #69234]	Multicellular complex name	Aerial mycelium
[Ref.: #69234]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69234]	Multicellular complex forming ability	no
[Ref.: #69234]	Multicellular complex name	Aerial mycelium
[Ref.: #69234]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

[Ref.: #69234]

Caption:

(ISP6, SSM+T, SSM-T)

[Ref.: #69234]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69234]

Caption:

(ISP6, SSM+T, SSM-T)

[Ref.: #69234]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #29778]	growth	15-37 °C
[Ref.: #29778]	optimum	30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #29778]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29778]			optimum	7.5
[Ref.: #29778]			growth	5.2-11.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29778]

Oxygen tolerance

aerobe

	Salt		Salt conc.
[Ref.: #29778]	NaCl	growth	0-15	%
[Ref.: #29778]	NaCl	optimum	15	%
[Ref.: #69234]	NaCl	growth	0-10	%

[Ref.: #67770]

Observation

quinones: MK-8, MK-9, MK-7, MK-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29778]	arabinose ChEBI	+	carbon source
[Ref.: #69234]	arabinose ChEBI	+/-	growth
[Ref.: #69234]	cellulose ChEBI	+/-	growth
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #29778]	fructose ChEBI	+	carbon source
[Ref.: #69234]	fructose ChEBI	+	growth
[Ref.: #29778]	fucose ChEBI	+	carbon source
[Ref.: #29778]	galactose ChEBI	+	carbon source
[Ref.: #29778]	galacturonate ChEBI	+	carbon source
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #29778]	glucose ChEBI	+	carbon source
[Ref.: #69234]	glucose ChEBI	+/-	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69234]	inositol ChEBI	+/-	growth
[Ref.: #29778]	lactose ChEBI	+	carbon source
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69234]	mannose ChEBI	+	growth
[Ref.: #29778]	methyl D-glucoside ChEBI	+	carbon source
[Ref.: #29778]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #29778]	propionate ChEBI	+	carbon source
[Ref.: #69234]	raffinose ChEBI	+/-	growth
[Ref.: #69234]	rhamnose ChEBI	+/-	growth
[Ref.: #29778]	ribose ChEBI	+	carbon source
[Ref.: #69234]	sucrose ChEBI	+/-	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #29778]	tween 40 ChEBI	+	carbon source
[Ref.: #29778]	tween 80 ChEBI	+	carbon source
[Ref.: #68379]	urea ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #29778]	xylose ChEBI	+	carbon source
[Ref.: #69234]	xylose ChEBI	+/-	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68379]	alkaline phosphatase	-	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #29778]	alpha-galactosidase	+	3.2.1.22
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	-	3.2.1.20	* from API Coryne, API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne, API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne, API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #29778]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne, API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68379]	urease	+	3.5.1.5	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69234]	3728	-	-	-	-	-	-	-	-	-	+	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69234]	5912	not determinedn.d.	-	+	+	+/-	+	+/-	-	+/-	-	+/-	+/-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16562]	Sample type/isolated from	soil from a coal mine
[Ref.: #16562]	Country	India
[Ref.: #16562]	Country ISO 3 Code	IND
[Ref.: #16562]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil from a coal mine
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Other	#Mine
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ871122 (>99% sequence identity) for Enteractinococcus fodinae from Microbeatlas

Aquatic Samples	27
Soil Samples	41
Animal Samples	166
Plant Samples	3
Total Samples	237

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16562]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16562]	Enteractinococcus fodinae strain G5 16S ribosomal RNA gene, complete sequence	FJ871122	1434	ENA	684663 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Enteractinococcus fodinae DSM 22966	2923486541	draft	JGI IMG/M	684663 tax ID	*

[Ref.: #16562]	GC-content	61.6 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #29778]	GC-content	61.6 mol%

Availability in culture collections External links

[Ref.: #16562]

Culture collection no.

DSM 22966, MTCC 9846, JCM 17931

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Enteractinococcus lamae sp. nov. and Enteractinococcus viverrae sp. nov., isolated from animal faeces.	Chen X, Li GD, Li QY, Hu CJ, Qiu SM, Jiang Y, Jiang CL, Han L, Huang XS	Antonie Van Leeuwenhoek	10.1007/s10482-015-0603-3	2015	*
Phylogeny	Enteractinococcus coprophilus gen. nov., sp. nov., of the family Micrococcaceae, isolated from Panthera tigris amoyensis faeces, and transfer of Yaniella fodinae Dhanjal et al. 2011 to the genus Enteractinococcus as Enteractinococcus fodinae comb. nov.	Cao YR, Jiang Y, Jin RX, Han L, He WX, Li YL, Huang XS, Xue QH	Int J Syst Evol Microbiol	10.1099/ijs.0.034249-0	2012	*
Phylogeny	Yaniella fodinae sp. nov., isolated from a coal mine.	Dhanjal S, Ruckmani A, Cameotra SS, Pukall R, Klenk HP, Mayilraj S	Int J Syst Evol Microbiol	10.1099/ijs.0.020636-0	2010	*

References

#16562

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22966

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29778

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26158 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69234

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#26158

IJSEM 535 2011 ( DOI 10.1099/ijs.0.020636-0 , PubMed 20382793 )

* These data were automatically processed and therefore are not curated

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