Yaniella halotolerans (DSM 15476, CCTCC AA 001023, JCM 13527)

Name: Yaniella halotolerans (DSM 15476, CCTCC AA 001023, JCM 13527)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7787

Type strain

Culture col. no. DSM 15476 CCTCC AA 001023 JCM 13527 YIM 70085 NBRC 107837

NCBI tax ID(s) 1123507 225453

Special Collections DSMZ JCM Wink compendium Literature strains

History DSMZ <- W.-J. Li <- CCTCC <- YIM JCM <-- DSM 15476 <-- W.-J. Li YIM 70085.

Links

Yaniella halotolerans DSM 15476 is an aerobe, Gram-positive, coccus-shaped bacterium that was isolated from saline soil.

Gram-positive coccus-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 131438

DSM 15476,JCM 13527

@ref 20215

Last LPSN update 2026-05-29 08:26:44

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Micrococcaceae

Genus Yaniella

Species Yaniella halotolerans

Full scientific name Yaniella halotolerans (Li et al. 2004) Li et al. 2008

Synonyms (1)

Yania halotolerans

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
30044	positive	0.55 µm	0.55 µm	coccus-shaped
125438						90

Colony morphology

@ref	Colony color	Incubation period	Medium used
18392	Signal yellow (1003)	10-14 days	ISP 2
18392	Signal yellow (1003)	10-14 days	ISP 6

Multicellular morphology

@ref	Forms multicellular complex	Medium name
18392		ISP 2
18392		ISP 6

Multimedia

@ref:	66793
multimedia content:	EM_DSM_15476_1.jpg
multimedia.multimedia content:	EM_DSM_15476_1.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_15476_2.jpg
multimedia.multimedia content:	EM_DSM_15476_2.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_15476_3.jpg
multimedia.multimedia content:	EM_DSM_15476_3.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_15476_4.jpg
multimedia.multimedia content:	EM_DSM_15476_4.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
5946	MODIFIED ISP5 MEDIUM (DSMZ Medium 993b)	Medium recipe at MediaDive	Name: MODIFIED ISP5 MEDIUM (DSMZ Medium 993b) Composition: KCl 100.0 g/l Agar 20.0 g/l Glycerol 10.0 g/l Yeast extract 5.0 g/l L-Asparagine 1.0 g/l K2HPO4 1.0 g/l MnCl2 x 4 H2O 0.001 g/l ZnSO4 x 7 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
18392	ISP 2		Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
18392	ISP 6		Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes

Culture temp

@ref	Growth	Type	Temperature (°C)
5946	positive	growth	28
18392	positive	optimum	28
30044	positive	growth	10-40
30044	positive	optimum	29
67770	positive	growth	28

Culture pH

@ref	Ability	Type	PH
30044	positive	optimum	7.5
30044	positive	growth	7.0-8.0

Physiology and metabolism

Oxygen tolerance

30044

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
30044
125439		98.625

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30044	NaCl	positive	growth	0-25 %

Murein

@ref	Murein short key	Type
5946	A11.56	A4alpha L-Lys-Gly-L-Glu

Observation

@ref	Observation
30044	aggregates in clumps
67770	quinones: MK-8, MK-9, MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30044	22599 ChEBI	arabinose	+	carbon source
30044	17057 ChEBI	cellobiose	+	carbon source
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
30044	28757 ChEBI	fructose	+	carbon source
30044	28260 ChEBI	galactose	+	carbon source
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
30044	17234 ChEBI	glucose	+	carbon source
30044	17716 ChEBI	lactose	+	carbon source
30044	17306 ChEBI	maltose	+	carbon source
30044	29864 ChEBI	mannitol	+	carbon source
30044	37684 ChEBI	mannose	+	carbon source
30044	17632 ChEBI	nitrate	+	reduction
30044	17992 ChEBI	sucrose	+	carbon source
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
68379	16199 ChEBI	urea	+	hydrolysis	from API Coryne
30044	18222 ChEBI	xylose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
30044	16136 ChEBI	hydrogen sulfide

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68379	alpha-glucosidase	-	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68382	beta-glucosidase	-	3.2.1.21	from API zym
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
30044	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68379	gelatinase	-		from API Coryne
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68382	trypsin	-	3.4.21.4	from API zym
30044	urease	+	3.5.1.5
68379	urease	+	3.5.1.5	from API Coryne
68382	valine arylamidase	+		from API zym

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
18392	not determinedn.d.	-	-	+/-	-	-	-	-	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	-	not determinedn.d.	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
18392	not determinedn.d.	+	+	+	-	+	+	-	-	-	+	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Condition	#Saline	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
5946	saline soil	Xijiang	China	CHN	Asia
67770	Saline soil	Xinjiang Province	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AY228479 (>99% sequence identity) for Yaniella halotolerans from Microbeatlas

Aquatic Samples	257
Soil Samples	695
Animal Samples	3070
Plant Samples	132
Total Samples	4154

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
18392	1	German classification According to TRBA 466
5946	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM42080v1 assembly for Yaniella halotolerans DSM 15476	contig	GCA_000420805	1123507.4	2524614768	1123507	75.93

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
5946	Yania halophila strain YIM 70085 16S ribosomal RNA gene, partial sequence	AY228479	1503		225453

GC content

@ref	GC-content (mol%)	Method
5946	53.5
67770	55.6	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM42080v1 assembly for Yaniella halotolerans DSM 15476
NCBI: GCA_000420805

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	89.91	no
125439	gram_stain	BacteriaNetⓘ	positive	59.72	no
125439	motility	BacteriaNetⓘ	no	70.76	no
125439	spore_formation	BacteriaNetⓘ	no	98.63	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Yaniella halotolerans DSM 15476
PATRIC: 1123507.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.20	yes
125438	anaerobic	anaerobicⓘ	no	96.24	no
125438	spore-forming	spore-formingⓘ	no	81.85	yes
125438	aerobic	aerobicⓘ	yes	85.66	yes
125438	thermophilic	thermophileⓘ	no	93.00	yes
125438	flagellated	motile2+ⓘ	no	90.00	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
	Metabolomic Insights into the Antimicrobial Effects of Metschnikowia Yeast on Phytopathogens	Perek Z, Krupa S, Niziol J, Kregiel D, Ruman T, Gutarowska B.	Molecules		2025
	Antimicrobial Activities of Plant Extracts against Solanum tuberosum L. Phytopathogens.	Steglinska A, Bekhter A, Wawrzyniak P, Kunicka-Styczynska A, Jastrzabek K, Fidler M, Smigielski K, Gutarowska B.	Molecules	10.3390/molecules27051579	2022
Pathogenicity	Metabolite Formation by Fungal Pathogens of Potatoes (Solanum tuberosum L.) in the Presence of Bioprotective Agents.	Steglinska A, Sulyok M, Janas R, Grzesik M, Liszkowska W, Kregiel D, Gutarowska B.	Int J Environ Res Public Health	10.3390/ijerph20065221	2023
	Proteomic Signatures of Microbial Adaptation to the Highest Ultraviolet-Irradiation on Earth: Lessons From a Soil Actinobacterium.	Zannier F, Portero LR, Douki T, Gartner W, Farias ME, Albarracin VH.	Front Microbiol	10.3389/fmicb.2022.791714	2022
Genetics	The crosstalk between microbiota and metabolites in AP mice: an analysis based on metagenomics and untargeted metabolomics.	Zhou Q, Tao X, Guo F, Zhu Y, Wu Y, Xiang H, Shang D.	Front Cell Infect Microbiol	10.3389/fcimb.2023.1134321	2023
	High-throughput sequencing reveals the structure and metabolic resilience of desert microbiome confronting climate change.	Mousa WK, Abu-Izneid T, Salah-Tantawy A.	Front Plant Sci	10.3389/fpls.2024.1294173	2024
	Succession, Replacement, and Modification of Chicken Litter Microbiota.	Kubasova T, Faldynova M, Crhanova M, Karasova D, Zeman M, Babak V, Rychlik I.	Appl Environ Microbiol	10.1128/aem.01809-22	2022
	Integration of Multiomic Data to Characterize the Influence of Milk Fat Composition on Cantal-Type Cheese Microbiota.	Fretin M, Gerard A, Ferlay A, Martin B, Buchin S, Theil S, Rifa E, Loux V, Rue O, Chassard C, Delbes C.	Microorganisms	10.3390/microorganisms10020334	2022
Phylogeny	An Exploratory Study on the Microbiome of Northern and Southern Populations of Ixodes scapularis Ticks Predicts Changes and Unique Bacterial Interactions.	Kumar D, Kumar D, Downs LP, Adegoke A, Machtinger E, Oggenfuss K, Ostfeld RS, Embers M, Karim S.	Pathogens	10.3390/pathogens11020130	2022
	Decoding the biological information contained in two ancient Slavonic parchment codices: an added historical value.	Pinar G, Tafer H, Schreiner M, Miklas H, Sterflinger K.	Environ Microbiol	10.1111/1462-2920.15064	2020
	Bacterial community assembly from cow teat skin to ripened cheeses is influenced by grazing systems.	Fretin M, Martin B, Rifa E, Isabelle VM, Pomies D, Ferlay A, Montel MC, Delbes C.	Sci Rep	10.1038/s41598-017-18447-y	2018
Genetics	Genome-Based Taxonomic Classification of the Phylum Actinobacteria.	Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M.	Front Microbiol	10.3389/fmicb.2018.02007	2018
Phylogeny	Aureimonas flava sp. nov., a novel endophytic bacterium isolated from leaf of Acrostichum aureum.	Tuo L, Yan XR.	Int J Syst Evol Microbiol	10.1099/ijsem.0.003252	2019
Metabolism	Dechloromonas hortensis sp. nov. and strain ASK-1, two novel (per)chlorate-reducing bacteria, and taxonomic description of strain GR-1.	Wolterink A, Kim S, Muusse M, Kim IS, Roholl PJM, van Ginkel CG, Stams AJM, Kengen SWM.	Int J Syst Evol Microbiol	10.1099/ijs.0.63404-0	2005
Phylogeny	Yaniella soli sp. nov., a new actinobacterium isolated from non-saline forest soil in China.	Chen YG, Chen J, Chen QH, Tang SK, Zhang YQ, He JW, Li WJ, Liu YQ	Antonie Van Leeuwenhoek	10.1007/s10482-010-9453-1	2010
Phylogeny	Yaniella fodinae sp. nov., isolated from a coal mine.	Dhanjal S, Ruckmani A, Cameotra SS, Pukall R, Klenk HP, Mayilraj S	Int J Syst Evol Microbiol	10.1099/ijs.0.020636-0	2010
Phylogeny	Proposal of Yaniaceae fam. nov. and Yania flava sp. nov. and emended description of the genus Yania.	Li WJ, Schumann P, Zhang YQ, Xu P, Chen GZ, Xu LH, Stackebrandt E, Jiang CL	Int J Syst Evol Microbiol	10.1099/ijs.0.63594-0	2005
Phylogeny	Yania halotolerans gen. nov., sp. nov., a novel member of the suborder Micrococcineae from saline soil in China.	Li WJ, Chen HH, Xu P, Zhang YQ, Schumann P, Tang SK, Xu LH, Jiang CL	Int J Syst Evol Microbiol	10.1099/ijs.0.02875-0	2004

References

#5946	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15476
#18392	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26405	IJSEM 525 2004 ( DOI 10.1099/ijs.0.02875-0 , PubMed 15023970 )
#30044	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26405
#66793	Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Yaniella halotolerans (DSM 15476, CCTCC AA 001023, JCM 13527)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Murein

Observation

Metabolite utilization

Metabolite production

Enzymes

API coryne

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000420805

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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