Name: Renibacterium salmoninarum Lea-1-74
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7774

Type strain:

Species: Renibacterium salmoninarum

Strain Designation: Lea-1-74

Culture col. no.: DSM 20767, ATCC 33209, JCM 11484, CIP 103036, IFO 15589, IMSNU 21308, LMG 10846, NBRC 15589, NCIMB 2235

Strain history: CIP <- 1987, ATCC <- J.E. Sanders: strain Lea-1-74

NCBI tax ID(s): 288705 (strain), 1646 (species)

SI-ID 4758

LMG 10846, ATCC 33209, CIP 103036, DSM 20767, NCIMB 2235, IFO 15589, NCMB 2235, JCM 11484, NBRC 15589

Section

Renibacterium salmoninarum Lea-1-74 is an obligate aerobe, psychrophilic animal pathogen that was isolated from yearling chinook salmon .

animal pathogen
obligate aerobe
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Micrococcaceae*
	Genus	*Renibacterium*
	Species	**Renibacterium salmoninarum**
	Full Scientific Name (LPSN)	Renibacterium salmoninarum Sanders and Fryer 1980

Information on morphological and physiological properties Morphology

[Ref.: #122401]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #122401]	Cell shape	rod-shaped

[Ref.: #122401]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %95.741

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9073]

Culture medium

KDM-2 MEDIUM (DSMZ Medium 435)

[Ref.: #9073]

Culture medium growth

[Ref.: #9073]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9073]

Culture medium composition

expand / minimize

[Ref.: #37105]

Culture medium

MEDIUM 68 - for Renibacterium salmoninarum

[Ref.: #37105]

Culture medium growth

[Ref.: #37105]

Culture medium composition

expand / minimize

[Ref.: #122401]

Culture medium

CIP Medium 68

[Ref.: #122401]

Culture medium growth

[Ref.: #122401]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #9073]		growth	15 °C
[Ref.: #37105]		growth	18 °C
[Ref.: #67770]		growth	17 °C
[Ref.: #122401]		growth	15-22 °C
[Ref.: #122401]	no	growth	10 °C
[Ref.: #122401]	no	growth	25 °C
[Ref.: #122401]	no	growth	30 °C
[Ref.: #122401]	no	growth	37 °C

[Ref.: #9073]	Temperature range	psychrophilic
[Ref.: #37105]	Temperature range	psychrophilic
[Ref.: #67770]	Temperature range	psychrophilic
[Ref.: #122401]	Temperature range	psychrophilic
[Ref.: #122401]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #122401]

Oxygen tolerance

obligate aerobe

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.994

[Ref.: #9073]

Name of produced compound

leukoagglutinin p57

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #122401]		NaCl		growth	0-10	%

[Ref.: #9073]

Murein short key

A11.47

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #122401]	citrate ChEBI	-	carbon source
[Ref.: #122401]	esculin ChEBI	-	hydrolysis
[Ref.: #122401]	hippurate ChEBI	-	hydrolysis
[Ref.: #122401]	nitrate ChEBI	-	reduction
[Ref.: #122401]	nitrate ChEBI	-	respiration
[Ref.: #122401]	nitrite ChEBI	-	reduction

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #122401]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #122401]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #122401]		acetoin ChEBI	-
[Ref.: #122401]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #122401]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #122401]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #122401]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #122401]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #122401]	gelatinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #122401]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #122401]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #122401]	oxidase	-
[Ref.: #122401]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #122401]	tryptophan deaminase	-
[Ref.: #122401]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122401]	7325	-	+	+	+	-	+	-	-	+	-	+	+	-	-	-	+	-	-	+	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	cardiolipin biosynthesis	100	7 of 7
[Ref.: #66794]	glycogen metabolism	100	5 of 5
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	IAA biosynthesis	100	3 of 3
[Ref.: #66794]	valine metabolism	100	9 of 9
[Ref.: #66794]	lipoate biosynthesis	100	5 of 5
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	phenylacetate degradation (aerobic)	100	5 of 5
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	taurine degradation	100	1 of 1
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	peptidoglycan biosynthesis	93.33	14 of 15
[Ref.: #66794]	pentose phosphate pathway	90.91	10 of 11
[Ref.: #66794]	threonine metabolism	90	9 of 10
[Ref.: #66794]	CO2 fixation in Crenarchaeota	88.89	8 of 9
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	d-mannose degradation	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	isoleucine metabolism	87.5	7 of 8
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	citric acid cycle	85.71	12 of 14
[Ref.: #66794]	vitamin B1 metabolism	84.62	11 of 13
[Ref.: #66794]	glutamate and glutamine metabolism	82.14	23 of 28
[Ref.: #66794]	proline metabolism	81.82	9 of 11
[Ref.: #66794]	Entner Doudoroff pathway	80	8 of 10
[Ref.: #66794]	ethylmalonyl-CoA pathway	80	4 of 5
[Ref.: #66794]	myo-inositol biosynthesis	80	8 of 10
[Ref.: #66794]	methylglyoxal degradation	80	4 of 5
[Ref.: #66794]	4-hydroxyphenylacetate degradation	80	8 of 10
[Ref.: #66794]	glutathione metabolism	78.57	11 of 14
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	heme metabolism	78.57	11 of 14
[Ref.: #66794]	molybdenum cofactor biosynthesis	77.78	7 of 9
[Ref.: #66794]	NAD metabolism	77.78	14 of 18
[Ref.: #66794]	phenylalanine metabolism	76.92	10 of 13
[Ref.: #66794]	leucine metabolism	76.92	10 of 13
[Ref.: #66794]	alanine metabolism	75.86	22 of 29
[Ref.: #66794]	purine metabolism	75.53	71 of 94
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	lactate fermentation	75	3 of 4
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	gluconeogenesis	75	6 of 8
[Ref.: #66794]	cyclohexanol degradation	75	3 of 4
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	75	9 of 12
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	tryptophan metabolism	73.68	28 of 38
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	tetrahydrofolate metabolism	71.43	10 of 14
[Ref.: #66794]	pyrimidine metabolism	71.11	32 of 45
[Ref.: #66794]	glycolysis	70.59	12 of 17
[Ref.: #66794]	methane metabolism	66.67	2 of 3
[Ref.: #66794]	glycolate and glyoxylate degradation	66.67	4 of 6
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	arginine metabolism	66.67	16 of 24
[Ref.: #66794]	enterobactin biosynthesis	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	histidine metabolism	65.52	19 of 29
[Ref.: #66794]	lipid metabolism	64.52	20 of 31
[Ref.: #66794]	metabolism of disaccharids	63.64	7 of 11
[Ref.: #66794]	C4 and CAM-carbon fixation	62.5	5 of 8
[Ref.: #66794]	methionine metabolism	61.54	16 of 26
[Ref.: #66794]	urea cycle	61.54	8 of 13
[Ref.: #66794]	propionate fermentation	60	6 of 10
[Ref.: #66794]	3-chlorocatechol degradation	60	3 of 5
[Ref.: #66794]	glycine betaine biosynthesis	60	3 of 5
[Ref.: #66794]	starch degradation	60	6 of 10
[Ref.: #66794]	cellulose degradation	60	3 of 5
[Ref.: #66794]	oxidative phosphorylation	58.24	53 of 91
[Ref.: #66794]	non-pathway related	57.89	22 of 38
[Ref.: #66794]	isoprenoid biosynthesis	57.69	15 of 26
[Ref.: #66794]	propanol degradation	57.14	4 of 7
[Ref.: #66794]	degradation of sugar alcohols	56.25	9 of 16
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	d-xylose degradation	54.55	6 of 11
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	degradation of hexoses	50	9 of 18
[Ref.: #66794]	CMP-KDO biosynthesis	50	2 of 4
[Ref.: #66794]	ketogluconate metabolism	50	4 of 8
[Ref.: #66794]	ribulose monophosphate pathway	50	1 of 2
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	carnitine metabolism	50	4 of 8
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	lysine metabolism	47.62	20 of 42
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	47.06	8 of 17
[Ref.: #66794]	phenylpropanoid biosynthesis	46.15	6 of 13
[Ref.: #66794]	vitamin B6 metabolism	45.45	5 of 11
[Ref.: #66794]	degradation of sugar acids	44	11 of 25
[Ref.: #66794]	tyrosine metabolism	42.86	6 of 14
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	O-antigen biosynthesis	40	2 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	40	2 of 5
[Ref.: #66794]	bacilysin biosynthesis	40	2 of 5
[Ref.: #66794]	arachidonic acid metabolism	38.89	7 of 18
[Ref.: #66794]	sulfate reduction	38.46	5 of 13
[Ref.: #66794]	dTDPLrhamnose biosynthesis	37.5	3 of 8
[Ref.: #66794]	androgen and estrogen metabolism	37.5	6 of 16
[Ref.: #66794]	carotenoid biosynthesis	36.36	8 of 22
[Ref.: #66794]	phenol degradation	35	7 of 20
[Ref.: #66794]	octane oxidation	33.33	1 of 3
[Ref.: #66794]	nitrate assimilation	33.33	3 of 9
[Ref.: #66794]	3-phenylpropionate degradation	33.33	5 of 15
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	degradation of pentoses	32.14	9 of 28
[Ref.: #66794]	ascorbate metabolism	31.82	7 of 22
[Ref.: #66794]	coenzyme M biosynthesis	30	3 of 10
[Ref.: #66794]	aclacinomycin biosynthesis	28.57	2 of 7
[Ref.: #66794]	ubiquinone biosynthesis	28.57	2 of 7
[Ref.: #66794]	chlorophyll metabolism	27.78	5 of 18
[Ref.: #66794]	polyamine pathway	26.09	6 of 23
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	lipid A biosynthesis	22.22	2 of 9
[Ref.: #66794]	allantoin degradation	22.22	2 of 9
[Ref.: #66794]	4-hydroxymandelate degradation	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9073]	Sample type/isolated from	yearling chinook salmon (Oncorhynchus tshawytscha)
[Ref.: #9073]	Host species	Oncorhynchus tshawytscha

[Ref.: #67770]	Sample type/isolated from	Kidney lesion of yearling Chinook salmon
[Ref.: #67770]	Geographic location (country and/or sea, region)	Leaburg Hatchery, OR
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America

[Ref.: #122401]	Sample type/isolated from	Animal, Yearling chinook salmon
[Ref.: #122401]	Geographic location (country and/or sea, region)	Oregon
[Ref.: #122401]	Country	United States of America
[Ref.: #122401]	Country ISO 3 Code	USA
[Ref.: #122401]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host

#Fishes

#Salmonidae

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9073]	Pathogenicity (animal)	yes
[Ref.: #9073]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122401]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Renibacterium salmoninarum DNA for 16S rRNA, partial sequence	AB017538	1472	ENA	1646 tax ID	*
[Ref.: #20218]	Renibacterium salmoninarum strain ATCC33209 16S ribosomal RNA and 23S ribosomal RNA genes, partial sequence	AF093461	894	ENA	1646 tax ID	*
[Ref.: #20218]	Renibacterium salmoninarum 16S ribosomal RNA gene, complete sequence	AF180950	2161	ENA	1646 tax ID	*
[Ref.: #20218]	Renibacterium salmoninarum 16S rRNA	X51601	1470	ENA	1646 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Renibacterium salmoninarum ATCC 33209	GCA_000018885	complete	GenBank	288705 tax ID	*
[Ref.: #66792]	Renibacterium salmoninarum ATCC 33209	288705.4	complete	PATRIC	288705 tax ID	*
[Ref.: #66792]	Renibacterium salmoninarum ATCC 33209	641228502	complete	JGI IMG/M	288705 tax ID	*

[Ref.: #9073]	GC-content	53.0 mol%
[Ref.: #67770]	GC-content	53.52 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	56.3 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Renibacterium salmoninarum ATCC 33209 ATCC 33209 NCBI: GCA_000018885.1
[Ref.: #69481]	spore-forming	no	55	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Renibacterium salmoninarum ATCC 33209 ATCC 33209 NCBI: GCA_000018885.1
[Ref.: #69480]	motile	no	94.536	no
[Ref.: #69480]	flagellated	no	97.802	no
[Ref.: #69480]	gram-positive	yes	92.267	no
[Ref.: #69480]	anaerobic	no	99.454	no
[Ref.: #69480]	aerobic	yes	94.975	no
[Ref.: #69480]	halophile	no	88.351	no
[Ref.: #69480]	spore-forming	no	92.424	no
[Ref.: #69480]	thermophile	no	98.623	yes
[Ref.: #69480]	glucose-util	yes	82.765	no
[Ref.: #69480]	glucose-ferment	no	88.622	no

Availability in culture collections External links

[Ref.: #9073]

Culture collection no.

DSM 20767, ATCC 33209, JCM 11484, CIP 103036, IFO 15589, IMSNU 21308, LMG 10846, NBRC 15589, NCIMB 2235

[Ref.: #77217]

SI-ID 4758

Literature:

Only first 10 entries are displayed. Click here to see all.

	Title	Authors	Journal	DOI	Year
Biotechnology	Proteomic analysis reveals Renibacterium salmoninarum grown under iron-limited conditions induces iron uptake mechanisms and overproduction of the 57-kDa protein.	Avendano-Herrera R, Saldivia P, Bethke J, Vargas C, Hernandez M	J Fish Dis	10.1111/jfd.13554	2021	*
Metabolism	Renibacterium salmoninarum iron-acquisition mechanisms and ASK cell line infection: Virulence and immune response.	Bethke J, Arias-Munoz E, Yanez A, Avendano-Herrera R	J Fish Dis	10.1111/jfd.13051	2019	*
Phylogeny	Psychromicrobium lacuslunae sp. nov., isolated from a high altitude lake.	Kiran S, Schumann P, Busse HJ, Sproer C, Rana A, Pal M, Korpole S, Tewari R, Gulati A	Int J Syst Evol Microbiol	10.1099/ijsem.0.002997	2018	*
Genetics	Comparative Genomic Analysis of Two Chilean Renibacterium salmoninarum Isolates and the Type Strain ATCC 33209T.	Bethke J, Yanez AJ, Avendano-Herrera R	Genome Biol Evol	10.1093/gbe/evy138	2018	*
Metabolism	Iron acquisition and siderophore production in the fish pathogen Renibacterium salmoninarum.	Bethke J, Poblete-Morales M, Irgang R, Yanez A, Avendano-Herrera R	J Fish Dis	10.1111/jfd.12456	2016	*
Genetics	Multilocus variable-number tandem-repeat genotyping of Renibacterium salmoninarum, a bacterium causing bacterial kidney disease in salmonid fish.	Matejusova I, Bain N, Colquhoun DJ, Feil EJ, McCarthy U, McLennan D, Snow M, Verner-Jeffreys D, Wallace IS, Weir SJ, Hall M	BMC Microbiol	10.1186/1471-2180-13-285	2013	*
Genetics	Genes associated with an effective host response by Chinook salmon to Renibacterium salmoninarum.	Rhodes LD, Wallis S, Demlow SE	Dev Comp Immunol	10.1016/j.dci.2008.08.006	2008	*
Genetics	Genome sequence of the fish pathogen Renibacterium salmoninarum suggests reductive evolution away from an environmental Arthrobacter ancestor.	Wiens GD, Rockey DD, Wu Z, Chang J, Levy R, Crane S, Chen DS, Capri GR, Burnett JR, Sudheesh PS, Schipma MJ, Burd H, Bhattacharyya A, Rhodes LD, Kaul R, Strom MS	J Bacteriol	10.1128/JB.00721-08	2008	*
Stress	A cohabitation challenge to compare the efficacies of vaccines for bacterial kidney disease (BKD) in chinook salmon Oncorhynchus tshawytscha.	Alcorn S, Murray AL, Pascho RJ, Varney J	Dis Aquat Organ	10.3354/dao063151	2005	*
Cultivation	Renibacterium salmoninarum: effect of hypochlorite treatment, and survival in water.	Hirvela-Koski V	Dis Aquat Organ	10.3354/dao059027	2004	*
Metabolism	A single Ala139-to-Glu substitution in the Renibacterium salmoninarum virulence-associated protein p57 results in antigenic variation and is associated with enhanced p57 binding to chinook salmon leukocytes.	Wiens GD, Pascho R, Winton JR	Appl Environ Microbiol	10.1128/AEM.68.8.3969-3977.2002	2002	*
Phylogeny	Renibacterium salmoninarum isolates from different sources possess two highly conserved copies of the rRNA operon .	Grayson TH, Alexander SM, Cooper LF, Gilpin ML	Antonie Van Leeuwenhoek	10.1023/a:1002745129625	2000	*
Enzymology	Differential expression of the virulence-associated protein p57 and characterization of its duplicated gene msa in virulent and attenuated strains of Renibacterium salmoninarum.	O'Farrell CL, Strom MS	Dis Aquat Organ	10.3354/dao038115	1999	*
Enzymology	The detection of two antigenic groups among Renibacterium salmoninarum isolates.	Bandin I, Santos Y, Magarinos B, Barja JL, Toranzo AE	FEMS Microbiol Lett	10.1016/0378-1097(92)90592-c	1992	*
Enzymology	Purification, and biochemical and structural characterization of a fimbrial haemagglutinin of Renibacterium salmoninarum.	Dubreuil JD, Jacques M, Graham L, Lallier R	J Gen Microbiol	10.1099/00221287-136-12-2443	1990	*
Enzymology	Characterization of the Renibacterium salmoninarum haemagglutinin.	Daly JG, Stevenson RM	J Gen Microbiol	10.1099/00221287-136-5-949	1990	*
	Comparative pan-genomic analysis of 51 Renibacterium salmoninarum indicates heterogeneity in the principal virulence factor, the 57 kDa protein.	Saldarriaga-Cordoba M, Avendano-Herrera R	J Fish Dis	10.1111/jfd.13653	2022	*
	Biochemical and immunochemical properties of the cell surface of Renibacterium salmoninarum.	Fiedler F, Draxl R	J Bacteriol	10.1128/jb.168.2.799-804.1986	1986	*

References

#9073

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20767

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#37105 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77217

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID4758.1 )

#122401 Collection of Institut Pasteur ; Curators of the CIP; CIP 103036
* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Renibacterium salmoninarum in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Renibacterium salmoninarum ATCC 33209 ATCC 33209

Renibacterium salmoninarum ATCC 33209 ATCC 33209

Change proposal

Change proposal