Nesterenkonia jeotgali (DSM 19081, JCM 12610, KCTC 19053)

Name: Nesterenkonia jeotgali (DSM 19081, JCM 12610, KCTC 19053)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7769

Type strain

Strain Designation JG-241

Culture col. no. DSM 19081 JCM 12610 KCTC 19053 NCIMB 14784 CIP 109490 1 more

NCBI tax ID(s) 317018

Special Collections DSMZ JCM KCTC CIP

History <- JCM <- J.-H. Yoon, strain JG-241 J.-H. Yoon JG-241. <- JH Yoon, KRIBB CIP <- 2007, JCM <- 2004, J.H. Yoon, KRIBB, Taejon, Korea: strain JG-241

Links

Nesterenkonia jeotgali JG-241 is an aerobe, Gram-positive bacterium that was isolated from jeotgal, Korean fermented seafood.

Gram-positive aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 232304

KCTC 19053,JCM 12610,DSM 19081,CIP 109490

@ref 20215

Last LPSN update 2026-02-09 11:19:33

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Micrococcaceae

Genus Nesterenkonia

Species Nesterenkonia jeotgali

Full scientific name Nesterenkonia jeotgali Yoon et al. 2006

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
67771	positive
120345	positive	coccus-shaped
125438			94.5
125438	positive		91.708

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7873	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
36804	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
120345	CIP Medium 13	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
7873	positive	growth	28
36804	positive	growth	30
67770	positive	growth	28
67771	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
67771	aerobe
120345	obligate aerobe

Spore formation

@ref	Spore formation	Confidence
125439		97.9

Murein

@ref	Murein short key	Type
7873	A11.42	A4alpha L-Lys-Gly-D-Asp

Observation

@ref	Observation
67770	quinones: MK-7, MK-8, MK-9, MK-6
67771	quinones: MK-7, MK-8 , MK-9

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
120345	17632 ChEBI	nitrate	-	reduction
120345	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
120345	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
120345	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
120345	oxidase	-
68382	trypsin	+	3.4.21.4	from API zym
120345	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	cellulose degradation	100	5 of 5
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	vitamin K metabolism	100	5 of 5
66794	ethanol fermentation	100	2 of 2
66794	acetate fermentation	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	ppGpp biosynthesis	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	lipoate biosynthesis	100	5 of 5
66794	adipate degradation	100	2 of 2
66794	cardiolipin biosynthesis	100	7 of 7
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	suberin monomers biosynthesis	100	2 of 2
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	cyanate degradation	100	3 of 3
66794	formaldehyde oxidation	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	citric acid cycle	92.86	13 of 14
66794	threonine metabolism	90	9 of 10
66794	chorismate metabolism	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	ketogluconate metabolism	87.5	7 of 8
66794	propanol degradation	85.71	6 of 7
66794	photosynthesis	85.71	12 of 14
66794	phenylalanine metabolism	84.62	11 of 13
66794	glutamate and glutamine metabolism	82.14	23 of 28
66794	pentose phosphate pathway	81.82	9 of 11
66794	purine metabolism	80.85	76 of 94
66794	3-chlorocatechol degradation	80	4 of 5
66794	gallate degradation	80	4 of 5
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	allantoin degradation	77.78	7 of 9
66794	4-hydroxymandelate degradation	77.78	7 of 9
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	vitamin B1 metabolism	76.92	10 of 13
66794	glycolysis	76.47	13 of 17
66794	alanine metabolism	75.86	22 of 29
66794	gluconeogenesis	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	sulfopterin metabolism	75	3 of 4
66794	pyrimidine metabolism	73.33	33 of 45
66794	peptidoglycan biosynthesis	73.33	11 of 15
66794	proline metabolism	72.73	8 of 11
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	arginine metabolism	70.83	17 of 24
66794	phenol degradation	70	14 of 20
66794	methionine metabolism	69.23	18 of 26
66794	leucine metabolism	69.23	9 of 13
66794	degradation of sugar alcohols	68.75	11 of 16
66794	flavin biosynthesis	66.67	10 of 15
66794	IAA biosynthesis	66.67	2 of 3
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	serine metabolism	66.67	6 of 9
66794	tryptophan metabolism	65.79	25 of 38
66794	non-pathway related	65.79	25 of 38
66794	histidine metabolism	65.52	19 of 29
66794	glutathione metabolism	64.29	9 of 14
66794	heme metabolism	64.29	9 of 14
66794	tetrahydrofolate metabolism	64.29	9 of 14
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	urea cycle	61.54	8 of 13
66794	NAD metabolism	61.11	11 of 18
66794	degradation of pentoses	60.71	17 of 28
66794	myo-inositol biosynthesis	60	6 of 10
66794	propionate fermentation	60	6 of 10
66794	glycine betaine biosynthesis	60	3 of 5
66794	4-hydroxyphenylacetate degradation	60	6 of 10
66794	glycogen metabolism	60	3 of 5
66794	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
66794	lipid metabolism	58.06	18 of 31
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	androgen and estrogen metabolism	56.25	9 of 16
66794	oxidative phosphorylation	56.04	51 of 91
66794	d-mannose degradation	55.56	5 of 9
66794	cysteine metabolism	55.56	10 of 18
66794	lysine metabolism	54.76	23 of 42
66794	metabolism of disaccharids	54.55	6 of 11
66794	pantothenate biosynthesis	50	3 of 6
66794	kanosamine biosynthesis II	50	1 of 2
66794	quinate degradation	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	Entner Doudoroff pathway	50	5 of 10
66794	starch degradation	50	5 of 10
66794	resorcinol degradation	50	1 of 2
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	tyrosine metabolism	50	7 of 14
66794	3-phenylpropionate degradation	46.67	7 of 15
66794	phenylpropanoid biosynthesis	46.15	6 of 13
66794	vitamin B6 metabolism	45.45	5 of 11
66794	degradation of hexoses	44.44	8 of 18
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	phosphatidylethanolamine bioynthesis	38.46	5 of 13
66794	carnitine metabolism	37.5	3 of 8
66794	d-xylose degradation	36.36	4 of 11
66794	enterobactin biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	nitrate assimilation	33.33	3 of 9
66794	sulfate reduction	30.77	4 of 13
66794	aclacinomycin biosynthesis	28.57	2 of 7
66794	carotenoid biosynthesis	27.27	6 of 22
66794	ascorbate metabolism	27.27	6 of 22
66794	CMP-KDO biosynthesis	25	1 of 4
66794	butanoate fermentation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
120345	-	+	+	+	-	+	+	-	+	-	+	+	-	-	-	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Seafood
#Engineered	#Food production	#Fermented

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
7873	jeotgal, Korean fermented seafood	Republic of Korea	KOR	Asia
67770	Jeotgal, Korean traditional fermented seafood	Republic of Korea	KOR	Asia
67771	From Jeotgal	Republic of Korea	KOR	Asia
120345	Food, Jeotgal, traditional Korean fermented seafood	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence AY928901 (>99% sequence identity) for Nesterenkonia from Microbeatlas

Aquatic Samples	600
Soil Samples	791
Animal Samples	2130
Plant Samples	449
Total Samples	3970

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7873	1	Risk group (German classification) According to TRBA 466
120345	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1413882v1 assembly for Nesterenkonia jeotgali DSM 19081	contig	GCA_014138825	317018.11	2867985893	317018	72.21
124043	ASM3952789v1 assembly for Nesterenkonia jeotgali JCM 12610	scaffold	GCA_039527895			317018	48.22

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7873	Nesterenkonia jeotgali 16S ribosomal RNA gene, partial sequence	AY928901	1480		317018

GC content

@ref	GC-content (mol%)	Method
7873	68
67770	68	high performance liquid chromatography (HPLC)
67771	68.0

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Nesterenkonia jeotgali DSM 19081
NCBI: GCA_014138825

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.90	no
125439	motility	BacteriaNetⓘ	yes	71.90	no
125439	gram_stain	BacteriaNetⓘ	negative	88.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	68.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Nesterenkonia jeotgali strain DSM 19081
PATRIC: 317018.11

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.71	yes
125438	anaerobic	anaerobicⓘ	no	98.13	no
125438	spore-forming	spore-formingⓘ	no	77.25	no
125438	thermophilic	thermophileⓘ	no	94.50	yes
125438	aerobic	aerobicⓘ	yes	89.37	yes
125438	flagellated	motile2+ⓘ	no	94.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Comparative Genomic Analyses of the Genus Nesterenkonia Unravels the Genomic Adaptation to Polar Extreme Environments.	Dai D, Lu H, Xing P, Wu Q.	Microorganisms	10.3390/microorganisms10020233	2022
Genetics	Comparative Genome Analysis of a Novel Alkaliphilic Actinobacterial Species Nesterenkonia haasae.	Wang S, Sun L, Narsing Rao MP, Fang BZ, Li WJ.	Pol J Microbiol	10.33073/pjm-2022-040	2022
Phylogeny	Nesterenkonia aurantiaca sp. nov., an alkaliphilic actinobacterium isolated from Antarctica.	Finore I, Orlando P, Di Donato P, Leone L, Nicolaus B, Poli A	Int J Syst Evol Microbiol	10.1099/ijsem.0.000917	2016
Phylogeny	Nesterenkonia jeotgali sp. nov., isolated from jeotgal, a traditional Korean fermented seafood.	Yoon JH, Jung SY, Kim W, Nam SW, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.64266-0	2006

References

#7873	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19081
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#36804	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#120345	Collection of Institut Pasteur ; Curators of the CIP; CIP 109490
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Nesterenkonia jeotgali (DSM 19081, JCM 12610, KCTC 19053)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Murein

Observation

Metabolite utilization

Metabolite production

Enzymes

Pathway annotation

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014138825

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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