Micrococcus lylae JL 178 is an aerobe, Gram-positive, coccus-shaped bacterium that has a white pigmentation and was isolated from human skin.
Gram-positive coccus-shaped pigmented aerobe genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Micrococcales |
| Family Micrococcaceae |
| Genus Micrococcus |
| Species Micrococcus lylae |
| Full scientific name Micrococcus lylae Kloos et al. 1974 (Approved Lists 1980) |
| BacDive ID | Other strains from Micrococcus lylae (8) | Type strain |
|---|---|---|
| 7749 | M. lylae DSM 20318, ATCC 27567, RM 291 | |
| 7750 | M. lylae ES1-308-9h, DSM 30578 | |
| 7751 | M. lylae ES-142, DSM 30762 | |
| 150987 | M. lylae CCUG 42941 | |
| 151727 | M. lylae CCUG 44721 | |
| 156794 | M. lylae CCUG 65281 | |
| 157024 | M. lylae CCUG 68719 | |
| 173161 | M. lylae CIMB 04-8410, CRBIP17.93 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 8593 | CORYNEBACTERIUM AGAR (DSMZ Medium 53) | Medium recipe at MediaDive | Name: CORYNEBACTERIUM AGAR (DSMZ Medium 53) Composition: Agar 15.0 g/l Casein peptone 10.0 g/l NaCl 5.0 g/l Glucose 5.0 g/l Yeast extract 5.0 g/l Distilled water | ||
| 37625 | MEDIUM 3 - Columbia agar | Columbia agar (39.000 g);distilled water (1000.000 ml) | |||
| 120723 | CIP Medium 3 | Medium recipe at CIP | |||
| 120723 | CIP Medium 72 | Medium recipe at CIP |
| @ref | Murein short key | Type | |
|---|---|---|---|
| 8593 | A11.31 | A4alpha L-Lys-D-Asp |
| 67770 | Observationquinones: MK-8(H2) |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 22934 | 30916 ChEBI | 2-oxoglutarate | - | growth | |
| 22934 | 16193 ChEBI | 3-hydroxybenzoate | + | growth | |
| 22934 | 37054 ChEBI | 3-hydroxybutyrate | + | growth | |
| 22934 | 30566 ChEBI | 4-aminobutyrate | - | growth | |
| 22934 | 17879 ChEBI | 4-hydroxybenzoate | + | growth | |
| 22934 | 30089 ChEBI | acetate | + | growth | |
| 22934 | 17128 ChEBI | adipate | - | growth | |
| 68375 | 22599 ChEBI | arabinose | - | fermentation | from API ID32STA |
| 68375 | 29016 ChEBI | arginine | - | hydrolysis | from API ID32STA |
| 22934 | 78208 ChEBI | azelaate | - | growth | |
| 22934 | 16958 ChEBI | beta-alanine | - | growth | |
| 22934 | casein | - | hydrolysis | ||
| 68375 | 17057 ChEBI | cellobiose | - | fermentation | from API ID32STA |
| 22934 | 16383 ChEBI | cis-aconitate | - | growth | |
| 22934 | 16947 ChEBI | citrate | + | growth | |
| 22934 | 15824 ChEBI | D-fructose | + | growth | |
| 68375 | 15824 ChEBI | D-fructose | - | fermentation | from API ID32STA |
| 22934 | 17634 ChEBI | D-glucose | + | growth | |
| 68375 | 17634 ChEBI | D-glucose | - | fermentation | from API ID32STA |
| 22934 | 16899 ChEBI | D-mannitol | - | growth | |
| 68375 | 16899 ChEBI | D-mannitol | - | fermentation | from API ID32STA |
| 22934 | 16024 ChEBI | D-mannose | - | growth | |
| 68375 | 16024 ChEBI | D-mannose | - | fermentation | from API ID32STA |
| 68375 | 16988 ChEBI | D-ribose | - | fermentation | from API ID32STA |
| 22934 | 17924 ChEBI | D-sorbitol | - | growth | |
| 22934 | 65327 ChEBI | D-xylose | - | growth | |
| 68375 | 4853 ChEBI | esculin | - | hydrolysis | from API ID32STA |
| 22934 | 29806 ChEBI | fumarate | + | growth | |
| 22934 | 24265 ChEBI | gluconate | - | growth | |
| 22934 | 17859 ChEBI | glutarate | - | growth | |
| 22934 | 17240 ChEBI | itaconate | - | growth | |
| 22934 | 16977 ChEBI | L-alanine | - | growth | |
| 22934 | 29991 ChEBI | L-aspartate | + | growth | |
| 22934 | 15971 ChEBI | L-histidine | + | growth | |
| 22934 | 15603 ChEBI | L-leucine | + | growth | |
| 22934 | 15589 ChEBI | L-malate | - | growth | |
| 22934 | 15729 ChEBI | L-ornithine | - | growth | |
| 22934 | 17295 ChEBI | L-phenylalanine | - | growth | |
| 22934 | 17203 ChEBI | L-proline | - | growth | |
| 22934 | 62345 ChEBI | L-rhamnose | - | growth | |
| 22934 | 17115 ChEBI | L-serine | - | growth | |
| 22934 | 16828 ChEBI | L-tryptophan | - | growth | |
| 22934 | 24996 ChEBI | lactate | + | growth | |
| 68375 | 17716 ChEBI | lactose | - | fermentation | from API ID32STA |
| 22934 | 68428 ChEBI | maltitol | + | growth | |
| 22934 | 17306 ChEBI | maltose | + | growth | |
| 68375 | 17306 ChEBI | maltose | - | fermentation | from API ID32STA |
| 22934 | 36986 ChEBI | mesaconate | - | growth | |
| 22934 | 17268 ChEBI | myo-inositol | - | growth | |
| 22934 | 506227 ChEBI | N-acetyl-D-glucosamine | - | growth | |
| 68375 | 59640 ChEBI | N-acetylglucosamine | - | fermentation | from API ID32STA |
| 68375 | 17632 ChEBI | nitrate | - | reduction | from API ID32STA |
| 120723 | 17632 ChEBI | nitrate | - | reduction | |
| 120723 | 16301 ChEBI | nitrite | - | reduction | |
| 68375 | 18257 ChEBI | ornithine | - | degradation | from API ID32STA |
| 22934 | 18401 ChEBI | phenylacetate | - | growth | |
| 22934 | 17272 ChEBI | propionate | - | growth | |
| 22934 | 17148 ChEBI | putrescine | - | growth | |
| 22934 | 15361 ChEBI | pyruvate | + | growth | |
| 68375 | 16634 ChEBI | raffinose | - | fermentation | from API ID32STA |
| 22934 | 15963 ChEBI | ribitol | - | growth | |
| 22934 | 76282 ChEBI | suberate | - | growth | |
| 22934 | 17992 ChEBI | sucrose | + | growth | |
| 68375 | 17992 ChEBI | sucrose | - | fermentation | from API ID32STA |
| 22934 | 15708 ChEBI | trans-aconitate | - | growth | |
| 22934 | 27082 ChEBI | trehalose | + | growth | |
| 68375 | 27082 ChEBI | trehalose | - | fermentation | from API ID32STA |
| 68375 | 32528 ChEBI | turanose | - | fermentation | from API ID32STA |
| 22934 | 53424 ChEBI | tween 20 | + | hydrolysis | |
| 22934 | 53426 ChEBI | tween 80 | + | hydrolysis | |
| 22934 | 16199 ChEBI | urea | - | hydrolysis | |
| 68375 | 16199 ChEBI | urea | - | hydrolysis | from API ID32STA |
| @ref | ChEBI | Metabolite | Is sensitive | Sensitivity conc. | |
|---|---|---|---|---|---|
| 68375 | 28368 | novobiocin | 1.8 µg | from API ID32STA |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | - | 3.1.3.2 | from API zym |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68375 | alkaline phosphatase | - | 3.1.3.1 | from API ID32STA |
| 68382 | alpha-chymotrypsin | + | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68375 | arginine dihydrolase | - | 3.5.3.6 | from API ID32STA |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 68375 | beta-galactosidase | - | 3.2.1.23 | from API ID32STA |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68375 | beta-glucosidase | - | 3.2.1.21 | from API ID32STA |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 68375 | beta-glucuronidase | - | 3.2.1.31 | from API ID32STA |
| 120723 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68382 | esterase (C 4) | - | from API zym | |
| 68382 | esterase lipase (C 8) | - | from API zym | |
| 68375 | L-arginine arylamidase | + | from API ID32STA | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | - | from API zym | |
| 68375 | ornithine decarboxylase | - | 4.1.1.17 | from API ID32STA |
| 120723 | oxidase | + | ||
| 68382 | trypsin | + | 3.4.21.4 | from API zym |
| 22934 | urease | - | 3.5.1.5 | |
| 120723 | urease | - | 3.5.1.5 | |
| 68375 | urease | - | 3.5.1.5 | from API ID32STA |
| 68382 | valine arylamidase | - | from API zym |
Global distribution of 16S sequence X80750 (>99% sequence identity) for Micrococcus lylae subclade from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 67770 | ASM456397v1 assembly for Micrococcus lylae BCRC 12151 | scaffold | 1273 | 62.5 | ||||
| 67770 | ASM157088v1 assembly for Micrococcus lylae NBRC 15355 | contig | 1349773 | 55.25 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | M.lylae 16S rDNA | X80750 | 1472 | 1273 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 86.00 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 98.30 | no |
| 125439 | motility | BacteriaNetⓘ | no | 70.40 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 65.50 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 95.13 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 98.32 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 85.54 | no |
| 125438 | aerobic | aerobicⓘ | yes | 83.96 | yes |
| 125438 | thermophilic | thermophileⓘ | no | 95.73 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 94.00 | no |
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| Enzymology | Characterization of Micrococcaceae strains isolated from the human urogenital tract by the conventional scheme and a micromethod. | Baldellon C, Megraud F. | J Clin Microbiol | 10.1128/jcm.21.3.474-477.1985 | 1985 | |
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| Phylogeny | First case report of isolation of Micrococcus lylae from urinary catheter of a 50-year-old woman suffering from malignancy. | Mandviya P, Ghanwate N, Thakare P. | J Infect Dev Ctries | 10.3855/jidc.16477 | 2023 | |
| Acid Red 88 biodegradation by Cu nanoparticles stabilized on Marinospirillum alkaliphilum strain N. | Eshghi S, Jookar Kashi F. | Sci Rep | 10.1038/s41598-025-03427-4 | 2025 | ||
| Micrococcus lylae MW407006 Pigment: Production, Optimization, Nano-Pigment Synthesis, and Biological Activities. | Shahin YH, Elwakil BH, Ghareeb DA, Olama ZA. | Biology (Basel) | 10.3390/biology11081171 | 2022 | ||
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| Enzymology | A broad-range PCR technique for the diagnosis of infective endocarditis. | Boujelben I, Gdoura R, Hammami A. | Braz J Microbiol | 10.1016/j.bjm.2017.03.019 | 2018 | |
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| Phylogeny | Emended descriptions of the genus Micrococcus, Micrococcus luteus (Cohn 1872) and Micrococcus lylae (Kloos et al. 1974). | Wieser M, Denner EB, Kampfer P, Schumann P, Tindall B, Steiner U, Vybiral D, Lubitz W, Maszenan AM, Patel BK, Seviour RJ, Radax C, Busse HJ | Int J Syst Evol Microbiol | 10.1099/00207713-52-2-629 | 2002 | |
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| Phylogeny | Micrococcus flavus sp. nov., isolated from activated sludge in a bioreactor. | Liu XY, Wang BJ, Jiang CY, Liu SJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.64489-0 | 2007 |
| #8593 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20315 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #22934 | Monika Wieser, Ewald B M Denner, Peter Kämpfer, Peter Schumann, Brian Tindall, Ulrike Steiner, Dietmar Vybiral, Werner Lubitz, A M Maszenan, B K C Patel, Robert J Seviour, Christian Radax, Hans-Jürgen Busse: Emended descriptions of the genus Micrococcus, Micrococcus luteus (Cohn 1872) and Micrococcus lylae (Kloos et al. 1974).. IJSEM 52: 629 - 637 2002 ( DOI 10.1099/00207713-52-2-629 , PubMed 11931177 ) |
| #37625 | ; Curators of the CIP; |
| #51330 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 33027 |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68375 | Automatically annotated from API ID32STA . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #120723 | Collection of Institut Pasteur ; Curators of the CIP; CIP 81.70 |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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BacDive in 2025: the core database for prokaryotic strain data