Name: Kocuria carniphila CCUG 55751
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7658

Type strain:

Species: Kocuria carniphila

Culture col. no.: CCUG 55751, JCM 14118, DSM 16004, CCM 132, NBRC 110786

Strain history: CCM 132 <-- J. Arpai 188 ("Micrococcus lactis").

NCBI tax ID(s): 262208 (species)

SI-ID 66427

CCM 132, DSM 16004, JCM 14118, CCUG 55751

Other strains from Kocuria carniphila

K. carniphila CCUG 55574

Section

Kocuria carniphila CCUG 55751 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from meat.

Gram-positive
mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Micrococcaceae*
	Genus	*Kocuria*
	Species	**Kocuria carniphila**
	Full Scientific Name (LPSN)	Kocuria carniphila Tvrzová et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69276]	Colony color	Ivory (1014)
[Ref.: #69276]	Cultivation medium used	ISP 3

[Ref.: #69276]	Colony color	Lemon yellow (1012)
[Ref.: #69276]	Cultivation medium used	ISP 2

[Ref.: #69276]	Colony color	Lemon yellow (1012)
[Ref.: #69276]	Cultivation medium used	ISP 6

[Ref.: #69276]	Colony color	Sulfur yellow (1016)
[Ref.: #69276]	Cultivation medium used	ISP 5

[Ref.: #69276]	Colony color	Sulfur yellow (1016)
[Ref.: #69276]	Cultivation medium used	ISP 7

[Ref.: #69276]	Colony color	Zinc yellow (1018)
[Ref.: #69276]	Cultivation medium used	ISP 4

[Ref.: #69276]	Colony color	Zinc yellow (1018)
[Ref.: #69276]	Cultivation medium used	suter with tyrosine

[Ref.: #69276]	Colony color	Zinc yellow (1018)
[Ref.: #69276]	Cultivation medium used	suter without tyrosine

[Ref.: #69276]	Pigment production	no
[Ref.: #69276]	Pigment name	Melanin
[Ref.: #69276]	Pigment production	no
[Ref.: #69276]	Pigment name	soluble pigment

[Ref.: #69276]	Multicellular complex forming ability	no
[Ref.: #69276]	Multicellular complex name	Aerial mycelium
[Ref.: #69276]	Medium Name (multicellularity)	ISP 2

[Ref.: #69276]	Multicellular complex forming ability	no
[Ref.: #69276]	Multicellular complex name	Aerial mycelium
[Ref.: #69276]	Medium Name (multicellularity)	ISP 3

[Ref.: #69276]	Multicellular complex forming ability	no
[Ref.: #69276]	Multicellular complex name	Aerial mycelium
[Ref.: #69276]	Medium Name (multicellularity)	ISP 4

[Ref.: #69276]	Multicellular complex forming ability	no
[Ref.: #69276]	Multicellular complex name	Aerial mycelium
[Ref.: #69276]	Medium Name (multicellularity)	ISP 5

[Ref.: #69276]	Multicellular complex forming ability	no
[Ref.: #69276]	Multicellular complex name	Aerial mycelium
[Ref.: #69276]	Medium Name (multicellularity)	ISP 6

[Ref.: #69276]	Multicellular complex forming ability	no
[Ref.: #69276]	Multicellular complex name	Aerial mycelium
[Ref.: #69276]	Medium Name (multicellularity)	ISP 7

[Ref.: #69276]	Multicellular complex forming ability	no
[Ref.: #69276]	Multicellular complex name	Aerial mycelium
[Ref.: #69276]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69276]	Multicellular complex forming ability	no
[Ref.: #69276]	Multicellular complex name	Aerial mycelium
[Ref.: #69276]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

[Ref.: #69276]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69276]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69276]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69276]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69276]

Caption:

(ISP6, ISP7, SSM+T, SSM-T)

[Ref.: #69276]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69276]

Caption:

(ISP6, ISP7, SSM+T, SSM-T)

[Ref.: #69276]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6235]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #6235]

Culture medium growth

[Ref.: #6235]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6235]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #6235]	growth	28 °C
[Ref.: #60715]	growth	37 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #6235]	Temperature range	mesophilic
[Ref.: #60715]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #60715]

Oxygen tolerance

microaerophile

[Ref.: #69481]	Ability of spore formation	no Confidence in %99
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.996

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69276]		NaCl		growth	0-7.5	%

[Ref.: #6235]	Murein short key	A11.06
[Ref.: #6235]	Murein types	A3alpha L-Lys-L-Ala₃

[Ref.: #67770]

Observation

quinones: MK-7(H₂)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69276]	arabinose ChEBI	-	growth
[Ref.: #69276]	cellulose ChEBI	-	growth
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69276]	fructose ChEBI	+	growth
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69276]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69276]	inositol ChEBI	+/-	growth
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69276]	mannose ChEBI	+	growth
[Ref.: #68379]	nitrate ChEBI	+	reduction	* from API Coryne
[Ref.: #69276]	raffinose ChEBI	-	growth
[Ref.: #69276]	rhamnose ChEBI	-	growth
[Ref.: #69276]	sucrose ChEBI	+	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69276]	xylose ChEBI	-	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym, API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym, API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym, API Coryne
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym, API Coryne
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API Coryne
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym, API Coryne
[Ref.: #68379]	pyrazinamidase	+	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69276]	3770	+	+	+	-	-	+	+	-	-	-	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69276]	5954	not determinedn.d.	-	+/-	+	-	+	+/-	+/-	-	-	-	+/-	-	+	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6235]	Sample type/isolated from	meat
[Ref.: #6235]	Country	Slovakia
[Ref.: #6235]	Country ISO 3 Code	SVK
[Ref.: #6235]	Continent	Europe

[Ref.: #60715]	Sample type/isolated from	Meat
[Ref.: #60715]	Country	Slovakia
[Ref.: #60715]	Country ISO 3 Code	SVK
[Ref.: #60715]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Meat
* marker position based on {}

Isolation sources categories

#Engineered

#Food production

#Meat

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM237391 (>99% sequence identity) for Kocuria from Microbeatlas

Aquatic Samples	1481
Soil Samples	802
Animal Samples	9515
Plant Samples	388
Total Samples	12186

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6235]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6235]	Kocuria carniphila partial 16S rRNA gene, strain CCM 132T	AJ622907	1515	ENA	262208 tax ID
[Ref.: #20218]	Kocuria carniphila partial 16S rRNA gene, isolate OS-32.d1	AM237350	1481	ENA	262208 tax ID	*
[Ref.: #20218]	Kocuria carniphila partial 16S rRNA gene, isolate OS-32.d2	AM237351	1418	ENA	262208 tax ID	*
[Ref.: #20218]	Kocuria carniphila partial 16S rRNA gene, isolate OS-94	AM237379	1420	ENA	262208 tax ID	*
[Ref.: #20218]	Kocuria carniphila partial 16S rRNA gene, isolate OS-114	AM237382	1120	ENA	262208 tax ID	*
[Ref.: #20218]	Kocuria carniphila partial 16S rRNA gene, isolate OS-130	AM237385	1420	ENA	262208 tax ID	*
[Ref.: #20218]	Kocuria carniphila partial 16S rRNA gene, isolate OS-155.b	AM237391	1419	ENA	262208 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Kocuria carniphila CCM 132	GCA_004136555	contig	GenBank	262208 tax ID
[Ref.: #66792]	Kocuria carniphila strain CCM 132	262208.3	wgs	PATRIC	262208 tax ID	*
[Ref.: #66792]	Kocuria carniphila CCM 132	2865693805	draft	JGI IMG/M	262208 tax ID	*

[Ref.: #6235]	GC-content	71 mol%
[Ref.: #67770]	GC-content	71 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Kocuria carniphila strain CCM 132 PATRIC: 262208.3
[Ref.: #69481]	spore-forming	no	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Kocuria carniphila strain CCM 132 PATRIC: 262208.3
[Ref.: #69480]	motile	no	92.344	no
[Ref.: #69480]	gram-positive	yes	94.389	no
[Ref.: #69480]	anaerobic	no	99.524	yes
[Ref.: #69480]	aerobic	yes	91.511	yes
[Ref.: #69480]	halophile	yes	64.068	no
[Ref.: #69480]	spore-forming	no	90.705	no
[Ref.: #69480]	glucose-util	yes	87.589	no
[Ref.: #69480]	thermophile	no	98.202	no
[Ref.: #69480]	flagellated	no	97.948	no
[Ref.: #69480]	glucose-ferment	no	79.791	yes

Availability in culture collections External links

[Ref.: #6235]

Culture collection no.

CCUG 55751, JCM 14118, DSM 16004, CCM 132, NBRC 110786

[Ref.: #77102]

SI-ID 66427

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Kocuria subflava sp. nov., isolated from marine sediment from the Indian Ocean.	Jiang Z, Zhang WH, Yuan CG, Chen JY, Cao LX, Park DJ, Xiao M, Kim CJ, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-015-0587-z	2015	*
Phylogeny	Reclassification of strain CCM 132, previously classified as Kocuria varians, as Kocuria carniphila sp. nov.	Tvrzova L, Schumann P, Sedlacek I, Pacova Z, Sproer C, Verbarg S, Kroppenstedt RM	Int J Syst Evol Microbiol	10.1099/ijs.0.63304-0	2005	*

References

#6235

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16004

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#60715 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55751

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69276

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77102

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID66427.1 )

* These data were automatically processed and therefore are not curated

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Kocuria carniphila strain CCM 132

Kocuria carniphila strain CCM 132

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Change proposal