Kocuria marina DSM 16420 is an aerobe, Gram-positive, coccus-shaped bacterium that was isolated from marine sediment.
Gram-positive coccus-shaped aerobe genome sequence 16S sequence Bacteria| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Micrococcales |
| Family Micrococcaceae |
| Genus Kocuria |
| Species Kocuria marina |
| Full scientific name Kocuria marina Kim et al. 2004 |
| BacDive ID | Other strains from Kocuria marina (9) | Type strain |
|---|---|---|
| 130426 | K. marina T2_13, DSM 30982 | |
| 130427 | K. marina T2_43, DSM 30996 | |
| 130428 | K. marina T2_49, DSM 30998 | |
| 148965 | K. marina CCUG 36652 | |
| 153783 | K. marina CCUG 50966 | |
| 154026 | K. marina CCUG 52044 | |
| 154867 | K. marina CCUG 55475 | |
| 155547 | K. marina CCUG 58089 | |
| 159453 | K. marina T_C1, DSM 110316 |
| @ref | Colony color | Medium used | |
|---|---|---|---|
| 69279 | Colourless | ISP 4 | |
| 69279 | Honey yellow (1005) | ISP 2 | |
| 69279 | Lemon yellow (1012) | ISP 3 | |
| 69279 | Lemon yellow (1012) | suter without tyrosine | |
| 69279 | Sand yellow (1002) | suter with tyrosine | |
| 69279 | Sand yellow (1002), zinc yellow (1018) | ISP 7 | |
| 69279 | Sufur yellow (1016) | ISP 6 | |
| 69279 | Sulfur yellow (1016) | ISP 5 |
| @ref: | 69279 |
| multimedia content: | DSM_16420_image3.jpeg |
| multimedia.multimedia content: | DSM_16420_image3.jpeg |
| caption: | Plates (514, ISP2, ISP3, ISP4, ISP5, ISP7) |
| intellectual property rights: | Helmholtz-Zentrum für Infektionsforschung GmbH |
| manual_annotation: | 1 |
| @ref: | 69279 |
| multimedia content: | DSM_16420_image4.jpeg |
| multimedia.multimedia content: | DSM_16420_image4.jpeg |
| caption: | Plates (514, ISP2, ISP3, ISP4, ISP5, ISP7) |
| intellectual property rights: | Helmholtz-Zentrum für Infektionsforschung GmbH |
| manual_annotation: | 1 |
| @ref: | 69279 |
| multimedia content: | DSM_16420_image7.jpeg |
| multimedia.multimedia content: | DSM_16420_image7.jpeg |
| caption: | (ISP6, ISP7, SSM+T, SSM-T) |
| intellectual property rights: | Helmholtz-Zentrum für Infektionsforschung GmbH |
| manual_annotation: | 1 |
| @ref: | 69279 |
| multimedia content: | DSM_16420_image8.jpeg |
| multimedia.multimedia content: | DSM_16420_image8.jpeg |
| caption: | (ISP6, ISP7, SSM+T, SSM-T) |
| intellectual property rights: | Helmholtz-Zentrum für Infektionsforschung GmbH |
| manual_annotation: | 1 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 6441 | BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) | Medium recipe at MediaDive | Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water |
| 29957 | Spore formationno |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 69279 | 22599 ChEBI | arabinose | - | growth | |
| 69279 | 62968 ChEBI | cellulose | - | growth | |
| 68379 | 17634 ChEBI | D-glucose | - | fermentation | from API Coryne |
| 68379 | 16899 ChEBI | D-mannitol | - | fermentation | from API Coryne |
| 68379 | 16988 ChEBI | D-ribose | - | fermentation | from API Coryne |
| 68379 | 65327 ChEBI | D-xylose | - | fermentation | from API Coryne |
| 68379 | 4853 ChEBI | esculin | - | hydrolysis | from API Coryne |
| 69279 | 28757 ChEBI | fructose | + | growth | |
| 68379 | 5291 ChEBI | gelatin | - | hydrolysis | from API Coryne |
| 29957 | 17234 ChEBI | glucose | + | carbon source | |
| 69279 | 17234 ChEBI | glucose | + | growth | |
| 68379 | 28087 ChEBI | glycogen | - | fermentation | from API Coryne |
| 69279 | 17268 ChEBI | inositol | + | growth | |
| 29957 | 17716 ChEBI | lactose | + | carbon source | |
| 68379 | 17716 ChEBI | lactose | - | fermentation | from API Coryne |
| 68379 | 17306 ChEBI | maltose | - | fermentation | from API Coryne |
| 29957 | 37684 ChEBI | mannose | + | carbon source | |
| 69279 | 37684 ChEBI | mannose | +/- | growth | |
| 29957 | 17632 ChEBI | nitrate | + | reduction | |
| 68379 | 17632 ChEBI | nitrate | + | reduction | from API Coryne |
| 69279 | 16634 ChEBI | raffinose | - | growth | |
| 69279 | 26546 ChEBI | rhamnose | +/- | growth | |
| 29957 | 17992 ChEBI | sucrose | + | carbon source | |
| 68379 | 17992 ChEBI | sucrose | - | fermentation | from API Coryne |
| 69279 | 17992 ChEBI | sucrose | + | growth | |
| 68379 | 16199 ChEBI | urea | + | hydrolysis | from API Coryne |
| 69279 | 18222 ChEBI | xylose | - | growth |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | - | 3.1.3.2 | from API zym |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68379 | alkaline phosphatase | + | 3.1.3.1 | from API Coryne |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68379 | alpha-glucosidase | + | 3.2.1.20 | from API Coryne |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68382 | beta-galactosidase | + | 3.2.1.23 | from API zym |
| 68379 | beta-galactosidase | + | 3.2.1.23 | from API Coryne |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68379 | beta-glucosidase | - | 3.2.1.21 | from API Coryne |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 68379 | beta-glucuronidase | - | 3.2.1.31 | from API Coryne |
| 29957 | catalase | + | 1.11.1.6 | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 29957 | gelatinase | + | ||
| 68379 | gelatinase | - | from API Coryne | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | + | from API zym | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API Coryne |
| 68379 | pyrazinamidase | + | 3.5.1.B15 | from API Coryne |
| 68379 | pyrrolidonyl arylamidase | + | 3.4.19.3 | from API Coryne |
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 29957 | urease | + | 3.5.1.5 | |
| 68379 | urease | + | 3.5.1.5 | from API Coryne |
| 68382 | valine arylamidase | + | from API zym |
Global distribution of 16S sequence AY211385 (>99% sequence identity) for Kocuria from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 124043 | ASM1465297v1 assembly for Kocuria marina KCTC 9943 | scaffold | 223184 | 74.63 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Kocuria marina partial 16S rRNA gene, isolate OS-69.b | AM237369 | 1209 | 223184 | ||
| 6441 | Kocuria marina 16S ribosomal RNA gene, partial sequence | AY211385 | 1440 | 223184 | ||
| 124043 | Kocuria marina strain KCTC 9943 16S ribosomal RNA gene, partial sequence. | MT759859 | 1379 | 223184 | ||
| 124043 | Kocuria marina strain KCTC 9943 16S ribosomal RNA gene, partial sequence. | MT758105 | 1379 | 223184 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 90.94 | yes |
| 125438 | anaerobic | anaerobicⓘ | no | 98.96 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 77.70 | yes |
| 125438 | aerobic | aerobicⓘ | yes | 83.04 | no |
| 125438 | thermophilic | thermophileⓘ | no | 96.00 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 91.50 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Liquid and Vapor Phase of Four Conifer-Derived Essential Oils: Comparison of Chemical Compositions and Antimicrobial and Antioxidant Properties. | Garzoli S, Masci VL, Caradonna V, Tiezzi A, Giacomello P, Ovidi E. | Pharmaceuticals (Basel) | 10.3390/ph14020134 | 2021 | ||
| Bioactivity and Chemical Profile of Rubus idaeus L. Leaves Steam-Distillation Extract. | De Santis D, Carbone K, Garzoli S, Laghezza Masci V, Turchetti G. | Foods | 10.3390/foods11101455 | 2022 | ||
| Phylogeny | Taxonomic note on Kocuria and Rothia: taxogenomic insights for addressing misidentifications and proposing new combinations and new subspecies. | Ghodhbane-Gtari F, Haj Nasr MA, Gatri R, Gtari M. | Int J Syst Evol Microbiol | 10.1099/ijsem.0.006586 | 2024 | |
| Phylogeny | First human case report of bloodstream infection caused by Kocuria indica in a patient with chronic idiopathic intestinal pseudo-obstruction. | Kitagawa D, Kogata S, Nakahata K, Kishida S, Kimura K, Yamauchi K, Yonekura T, Kitano T, Kasamatsu T, Shiraishi N, Suzuki S, Yamamoto A, Uejima R, Suzuki Y, Nakano A, Nakano R, Yano H, Maeda K, Nakamura F. | ASM Case Rep | 10.1128/asmcr.00066-24 | 2025 | |
| Relapsing Peritoneal Dialysis-Associated Peritonitis due to Kocuria rhizophila: A Case Report. | Nakata M, Kuji H, Toishi T, Inoue T, Kawaji A, Matsunami M, Fukuda J, Ohara M, Suzuki T. | Case Rep Nephrol Dial | 10.1159/000534765 | 2024 | ||
| Comparative Genomic and Transcriptomic Analysis Provides New Insights into the Aflatoxin B1 Biodegradability by Kocuria rosea from Deep Sea. | Wang J, Nan J. | Microorganisms | 10.3390/microorganisms13040875 | 2025 | ||
| Industrial-Scale Bioconversion of Three-Phase Residue by Musca domestica Larvae: Dynamics of Gut Microbiota and Their Ecological Driver. | Long W, Pang J, Yan W, Hu N. | Insects | 10.3390/insects16070686 | 2025 | ||
| Bovine mastitis in northeastern Brazil: Occurrence of emergent bacteria and their phenotypic and genotypic profile of antimicrobial resistance. | de Oliveira RP, Aragao BB, de Melo RPB, da Silva DMS, de Carvalho RG, Juliano MA, Farias MPO, de Lira NSC, Mota RA. | Comp Immunol Microbiol Infect Dis | 10.1016/j.cimid.2022.101802 | 2022 | ||
| Skin microbiome profile in people living with HIV/AIDS in Cameroon. | Ogai K, Nana BC, Lloyd YM, Arios JP, Jiyarom B, Awanakam H, Esemu LF, Hori A, Matsuoka A, Nainu F, Megnekou R, Leke RGF, Ekali GL, Okamoto S, Kuraishi T. | Front Cell Infect Microbiol | 10.3389/fcimb.2023.1211899 | 2023 | ||
| Pathogenicity | The discovery of antioxidants in marine microorganisms and their protective effects on the hepatic cells from chemical-induced oxidative stress. | Tripathi VC, Horam S, Singh A, Lata M, Reddy TJ, Arockiaraj J, Pasupuleti M. | Free Radic Res | 10.1080/10715762.2020.1725499 | 2020 | |
| Coordinated conformational changes in P450 decarboxylases enable hydrocarbons production from renewable feedstocks. | Generoso WC, Alvarenga AHS, Simoes IT, Miyamoto RY, Melo RR, Guilherme EPX, Mandelli F, Santos CA, Prata R, Santos CRD, Colombari FM, Morais MAB, Pimentel Fernandes R, Persinoti GF, Murakami MT, Zanphorlin LM. | Nat Commun | 10.1038/s41467-025-56256-4 | 2025 | ||
| Use of peripherally inserted central venous catheters and midline catheters for palliative care in patients with cancer: a systematic review. | Gravdahl E, Haugen DF, Fredheim OM. | Support Care Cancer | 10.1007/s00520-024-08664-3 | 2024 | ||
| Effect of far-infrared radiation on inhibition of colonies on packaging during storage of sterilised surgical instruments. | Fann LY, Cheng CC, Chien YC, Hsu CW, Chien WC, Huang YC, Chung RJ, Huang SH, Jiang YH, Yin SH, Cheng KW, Wu YP, Hsiao SH, Hsu SY, Huang YC, Chu CM. | Sci Rep | 10.1038/s41598-023-35352-9 | 2023 | ||
| Antimicrobial Properties of Secondary Metabolites Produced by Halomonas sp.: A Halophilic Bacterium. | Perumal K, Seenuvasan J, Nandhagopal M. | Cureus | 10.7759/cureus.69633 | 2024 | ||
| Management of chicken manure using black soldier fly (Diptera: Stratiomyidae) larvae assisted by companion bacteria. | Mazza L, Xiao X, Ur Rehman K, Cai M, Zhang D, Fasulo S, Tomberlin JK, Zheng L, Soomro AA, Yu Z, Zhang J. | Waste Manag | 10.1016/j.wasman.2019.10.055 | 2020 | ||
| First report of Kocuria marina bloodstream infection unrelated to a central venous catheter: a mini-review on an emerging and under-recognized opportunistic pathogen. | Pulcrano G, Balzaretti M, Grosini A, Piacentini V, Poddighe D. | Infez Med | 2017 | |||
| Biotechnology | The piranha gut microbiome provides a selective lens into river water biodiversity. | da Silva S, Vuong P, Amaral JRV, da Silva VAS, de Oliveira SS, Vermelho AB, Beale DJ, Bissett A, Whiteley AS, Kaur P, Macrae A. | Sci Rep | 10.1038/s41598-024-72329-8 | 2024 | |
| Phylogeny | Peripherally inserted central catheter-related bloodstream infection caused by Kocuria marina in an elderly man. | Mori N, Nishihara Y, Tayama H, Higuchi A, Aoki Y. | Infection | 10.1007/s15010-017-0980-9 | 2017 | |
| Enzymology | Modelling the growth kinetics of Kocuria marina DAGII as a function of single and binary substrate during batch production of beta-Cryptoxanthin. | Mitra R, Chaudhuri S, Dutta D. | Bioprocess Biosyst Eng | 10.1007/s00449-016-1678-6 | 2017 | |
| Isolation and Identification of an Emerging Pathogen, Kocuria marina, from Rattus rattus diardii. | Loong SK, Johari J, Che Mat Seri NAA, AbdulRazak O, Douadi B, Ahmad Nasrah SN, Mohd Zain SN, AbuBakar S. | Trop Biomed | 2016 | |||
| Multiple-omics analysis of three novel haloalkaliphilic species of Kocuria revealed that the phenolic acid-degrading abilities are ubiquitous in the genus | Xu L, Sun R, Zeng J, Wei H, Shen B, Sun J. | Front Microbiol | 2025 | |||
| Draft genome of the emerging pathogen, Kocuria marina, isolated from a wild urban rat. | Loong SK, Tan KK, Zainal N, Phoon WH, Zain SNM, AbuBakar S. | Mem Inst Oswaldo Cruz | 10.1590/0074-02760170132 | 2017 | ||
| Investigation of effects of orthokeratology and povidone iodine disinfecting solution on the conjunctival microbiome using MALDI-TOF mass spectrometry. | Boost MV, Cheung SW, Cho P. | Adv Ophthalmol Pract Res | 10.1016/j.aopr.2022.100024 | 2021 | ||
| Extruded canine diets containing primarily peas in contrast to those containing lamb and chicken meal are at higher risk of mold and mycotoxin contamination when treated similarly: An observational study. | Crosbie M, Pezzali JG, Hancock-Monroe L, Buff PR, Shoveller AK. | Food Sci Nutr | 10.1002/fsn3.4277 | 2024 | ||
| Pathogenicity | Notable alkaline tolerance of Kocuria marina isolate from blood of a pediatric patient with continuous intravenous epoprostenol therapy. | Horiuchi A, Kubota N, Hidaka E, Shimabukuro A, Yasukochi S, Nakamura T, Oana K, Kawakami Y. | J Infect Chemother | 10.1016/j.jiac.2015.06.004 | 2015 | |
| Protective effects and mechanism of coenzyme Q10 and vitamin C on doxorubicin-induced gastric mucosal injury and effects of intestinal flora. | Zhao X, Feng X, Ye N, Wei P, Zhang Z, Lu W. | Korean J Physiol Pharmacol | 10.4196/kjpp.2021.25.4.261 | 2021 | ||
| Liquid and Vapour Phase of Lavandin (Lavandula × intermedia) Essential Oil: Chemical Composition and Antimicrobial Activity. | Garzoli S, Turchetti G, Giacomello P, Tiezzi A, Laghezza Masci V, Ovidi E. | Molecules | 10.3390/molecules24152701 | 2019 | ||
| Genetics | High-quality draft genome sequence of Kocuria marina SO9-6, an actinobacterium isolated from a copper mine. | Castro DB, Pereira LB, Silva MV, Silva BP, Palermo BR, Carlos C, Belgini DR, Limache EE, Lacerda GV, Nery MB, Gomes MB, Souza SS, Silva TM, Rodrigues VD, Paulino LC, Vicentini R, Ferraz LF, Ottoboni LM. | Genom Data | 10.1016/j.gdata.2015.05.006 | 2015 | |
| Enzymology | Growth profiling, kinetics and substrate utilization of low-cost dairy waste for production of beta-cryptoxanthin by Kocuria marina DAGII. | Mitra R, Dutta D. | R Soc Open Sci | 10.1098/rsos.172318 | 2018 | |
| Comparative Antioxidant and Antimicrobial Activities of Several Conifer Needles and Bark Extracts. | Popescu Stegarus DI, Frum A, Dobrea CM, Cristea R, Gligor FG, Vicas LG, Ionete RE, Sutan NA, Georgescu C. | Pharmaceutics | 10.3390/pharmaceutics16010052 | 2023 | ||
| Enzymology | First report of Kocuria marina spontaneous peritonitis in a child. | Brandle G, L'Huillier AG, Wagner N, Gervaix A, Wildhaber BE, Lacroix L. | BMC Infect Dis | 10.1186/s12879-014-0719-5 | 2014 | |
| Characterizing Peri-Implant and Sub-Gingival Microbiota through Culturomics. First Isolation of Some Species in the Oral Cavity. A Pilot Study. | Martellacci L, Quaranta G, Fancello G, D'Addona A, Sanguinetti M, Patini R, Masucci L. | Pathogens | 10.3390/pathogens9050365 | 2020 | ||
| Phylogeny | Bacterial Signatures of Cerebral Thrombi in Large Vessel Occlusion Stroke. | Liao Y, Zeng X, Xie X, Liang D, Qiao H, Wang W, Guan M, Huang S, Jing Z, Leng X, Huang L. | mBio | 10.1128/mbio.01085-22 | 2022 | |
| Cynara cardunculus L. var. scolymus L. Landrace "Carciofo Ortano" as a Source of Bioactive Compounds. | Laghezza Masci V, Alicandri E, Antonelli C, Paolacci AR, Marabottini R, Tomassi W, Scarascia Mugnozza G, Tiezzi A, Garzoli S, Vinciguerra V, Vettraino AM, Ovidi E, Ciaffi M. | Plants (Basel) | 10.3390/plants13060761 | 2024 | ||
| Metabolism | Gut-associated bacteria throughout the life cycle of the bark beetle Dendroctonus rhizophagus Thomas and Bright (Curculionidae: Scolytinae) and their cellulolytic activities. | Morales-Jimenez J, Zuniga G, Ramirez-Saad HC, Hernandez-Rodriguez C. | Microb Ecol | 10.1007/s00248-011-9999-0 | 2012 | |
| Fortification of orange juice with microencapsulated Kocuria flava Y4 towards a novel functional beverage: Biological and quality aspects. | Barik A, Pallavi P, Sen SK, Rajhans G, Bose A, Raut S. | Heliyon | 10.1016/j.heliyon.2023.e17509 | 2023 | ||
| Metabolism | Isolation of biosurfactant producers, optimization and properties of biosurfactant produced by Acinetobacter sp. from petroleum-contaminated soil. | Chen J, Huang PT, Zhang KY, Ding FR. | J Appl Microbiol | 10.1111/j.1365-2672.2012.05242.x | 2012 | |
| Evaluation of Well Designs to Improve Access to Safe and Clean Water in Rural Tanzania. | Kilungo A, Powers L, Arnold N, Whelan K, Paterson K, Young D. | Int J Environ Res Public Health | 10.3390/ijerph15010064 | 2018 | ||
| Kocuria marina BS-15 a biosurfactant producing halophilic bacteria isolated from solar salt works in India. | Sarafin Y, Donio MB, Velmurugan S, Michaelbabu M, Citarasu T. | Saudi J Biol Sci | 10.1016/j.sjbs.2014.01.001 | 2014 | ||
| Analysis of the Antioxidant Composition of Low Molecular Weight Metabolites from the Agarolytic Bacterium Alteromonas macleodii QZ9-9: Possibilities for High-Added Value Utilization of Macroalgae. | Wang X, Feng Z, Li C, Cai X, Long H, Zhang X, Huang A, Zeng Y, Ren W, Xie Z. | Antioxidants (Basel) | 10.3390/antiox11101977 | 2022 | ||
| Community structure of environmental microorganisms associated with COVID-19 affected patients. | Zhang W, Mo G, Yang J, Hu X, Huang H, Zhu J, Zhang P, Xia H, Xie L. | Aerobiologia (Bologna) | 10.1007/s10453-021-09708-5 | 2021 | ||
| Atopic keratoconjunctivitis complicated by Kocuria koreensis keratitis: the first case. | Inada N, Shoji J, Yamagami S. | Allergy Asthma Clin Immunol | 10.1186/s13223-017-0178-9 | 2017 | ||
| A novel biosurfactant producing Kocuria rosea ABR6 as potential strain in oil sludge recovery and lubrication. | Akbari E, Rasekh B, Maal KB, Karbasiun F, Yazdian F, Emami-Karvani Z, Peighami R. | AMB Express | 10.1186/s13568-021-01283-9 | 2021 | ||
| Microbial Burden Estimation of Food Items, Built Environments, and the International Space Station Using Film Media. | Simpson AC, Suzuki T, Miller DR, Venkateswaran K. | Microorganisms | 10.3390/microorganisms10091714 | 2022 | ||
| Phylogeny | Directional Changes in the Intestinal Bacterial Community in Black Soldier Fly (Hermetia illucens) Larvae. | Li X, Zhou S, Zhang J, Zhou Z, Xiong Q. | Animals (Basel) | 10.3390/ani11123475 | 2021 | |
| Data Consult Service: Can we use observational data to address immediate clinical needs? | Ostropolets A, Zachariah P, Ryan P, Chen R, Hripcsak G. | J Am Med Inform Assoc | 10.1093/jamia/ocab122 | 2021 | ||
| Phylogenetically diverse bacteria isolated from tattoo inks, an azo dye-rich environment, decolorize a wide range of azo dyes. | Nho SW, Cui X, Kweon O, Jin J, Chen H, Moon MS, Kim SJ, Cerniglia CE. | Ann Microbiol | 10.1186/s13213-021-01648-2 | 2021 | ||
| Great Tit (Parus major) Uropygial Gland Microbiomes and Their Potential Defensive Roles. | Bodawatta KH, Schierbech SK, Petersen NR, Sam K, Bos N, Jonsson KA, Poulsen M. | Front Microbiol | 10.3389/fmicb.2020.01735 | 2020 | ||
| High carotenoid production by a halotolerant bacterium, Kocuria sp. strain QWT-12 and anticancer activity of its carotenoid. | Rezaeeyan Z, Safarpour A, Amoozegar MA, Babavalian H, Tebyanian, H, Shakeri F. | EXCLI J | 10.17179/excli2017-218 | 2017 | ||
| Effects of Traditional Sauce Type and Storage Time on Quality Characteristics, Shelf-life and Flavor Compounds of Marinated Pork Cooked by Sous Vide Method. | Kim YA, Ba HV, Hwang I. | Food Sci Anim Resour | 10.5851/kosfa.2019.e27 | 2019 | ||
| Draft genome sequence of Kocuria sp. SM24M-10 isolated from coral mucus. | Palermo BR, Castro DB, Pereira LB, Cauz AC, Magalhaes BL, Carlos C, da Costa FL, Scagion GP, Higa JS, Almeida LD, das Neves Mda S, Cordeiro MA, do Prado PF, da Silva TM, Balsalobre TW, Paulino LC, Vicentini R, Ferraz LF, Ottoboni LM. | Genom Data | 10.1016/j.gdata.2015.12.016 | 2016 | ||
| Phylogeny | Brine assemblages of ultrasmall microbial cells within the ice cover of Lake Vida, Antarctica. | Kuhn E, Ichimura AS, Peng V, Fritsen CH, Trubl G, Doran PT, Murray AE. | Appl Environ Microbiol | 10.1128/aem.00276-14 | 2014 | |
| Enzymology | Two cases of peritonitis caused by Kocuria marina in patients undergoing continuous ambulatory peritoneal dialysis. | Lee JY, Kim SH, Jeong HS, Oh SH, Kim HR, Kim YH, Lee JN, Kook JK, Kho WG, Bae IK, Shin JH. | J Clin Microbiol | 10.1128/jcm.00847-09 | 2009 | |
| Effect of Chronic Consumption of Sweeteners on Microbiota and Immunity in the Small Intestine of Young Mice. | Martinez-Carrillo BE, Rosales-Gomez CA, Ramirez-Duran N, Resendiz-Albor AA, Escoto-Herrera JA, Mondragon-Velasquez T, Valdes-Ramos R, Castillo-Cardiel A. | Int J Food Sci | 10.1155/2019/9619020 | 2019 | ||
| Enzymology | Antimicrobial Testing of Schinus molle (L.) Leaf Extracts and Fractions Followed by GC-MS Investigation of Biological Active Fractions. | Turchetti G, Garzoli S, Laghezza Masci V, Sabia C, Iseppi R, Giacomello P, Tiezzi A, Ovidi E. | Molecules | 10.3390/molecules25081977 | 2020 | |
| Sweat and Sebum Preferences of the Human Skin Microbiota. | Swaney MH, Nelsen A, Sandstrom S, Kalan LR. | Microbiol Spectr | 10.1128/spectrum.04180-22 | 2023 | ||
| Molecular Characteristics and Antimicrobial Susceptibility Profiles of Elizabethkingia Clinical Isolates in Shanghai, China. | Wang L, Zhang X, Li D, Hu F, Wang M, Guo Q, Yang F. | Infect Drug Resist | 10.2147/idr.s240963 | 2020 | ||
| Bacterial crude oil and polyaromatic hydrocarbon degraders from Kazakh oil fields as barley growth support. | Yessentayeva K, Reinhard A, Berzhanova R, Mukasheva T, Urich T, Mikolasch A. | Appl Microbiol Biotechnol | 10.1007/s00253-024-13010-y | 2024 | ||
| Successful treatment of a unique chronic multi-bacterial scalp infection with N-chlorotaurine, N-bromotaurine and bromamine T. | Kyriakopoulos AM, Nagl M, Orth-Holler D, Marcinkiewicz J, Baliou S, Zoumbourlis V. | Access Microbiol | 10.1099/acmi.0.000126 | 2020 | ||
| Endophytic Nocardiopsis sp. from Zingiber officinale with both antiphytopathogenic mechanisms and antibiofilm activity against clinical isolates. | Sabu R, Soumya KR, Radhakrishnan EK. | 3 Biotech | 10.1007/s13205-017-0735-4 | 2017 | ||
| Phylogeny | Biodiversity acts as insurance of productivity of bacterial communities under abiotic perturbations. | Awasthi A, Singh M, Soni SK, Singh R, Kalra A. | ISME J | 10.1038/ismej.2014.91 | 2014 | |
| Ameliorating process parameters for zeaxanthin yield in Arthrobacter gandavensis MTCC 25325. | Ram S, Tirkey SR, Kumar MA, Mishra S. | AMB Express | 10.1186/s13568-020-01008-4 | 2020 | ||
| Persistent bloodstream infection with Kocuria rhizophila related to a damaged central catheter. | Moissenet D, Becker K, Merens A, Ferroni A, Dubern B, Vu-Thien H. | J Clin Microbiol | 10.1128/jcm.06038-11 | 2012 | ||
| Phylogeny | Relative contributions of egg-associated and substrate-associated microorganisms to black soldier fly larval performance and microbiota. | Schreven SJJ, de Vries H, Hermes GDA, Smidt H, Dicke M, Jvan Loon JJA. | FEMS Microbiol Ecol | 10.1093/femsec/fiab054 | 2021 | |
| Metabolism | Sponge-derived Kocuria and Micrococcus spp. as sources of the new thiazolyl peptide antibiotic kocurin. | Palomo S, Gonzalez I, de la Cruz M, Martin J, Tormo JR, Anderson M, Hill RT, Vicente F, Reyes F, Genilloud O. | Mar Drugs | 10.3390/md11041071 | 2013 | |
| Pathogenicity | Indoor Particulate Matter From Smoker Homes Induces Bacterial Growth, Biofilm Formation, and Impairs Airway Antimicrobial Activity. A Pilot Study. | Stapleton EM, Manges R, Parker G, Stone EA, Peters TM, Blount RJ, Noriega J, Li X, Zabner J, Polgreen PM, Chipara O, Herman T, Comellas AP. | Front Public Health | 10.3389/fpubh.2019.00418 | 2019 | |
| Identification of Bacteria in Two Food Waste Black Soldier Fly Larvae Rearing Residues. | Gold M, von Allmen F, Zurbrugg C, Zhang J, Mathys A. | Front Microbiol | 10.3389/fmicb.2020.582867 | 2020 | ||
| Pathogenicity | Isolation and characterization of bacteria resistant to metallic copper surfaces. | Santo CE, Morais PV, Grass G. | Appl Environ Microbiol | 10.1128/aem.01952-09 | 2010 | |
| Midgut microbial community of Culex quinquefasciatus mosquito populations from India. | Chandel K, Mendki MJ, Parikh RY, Kulkarni G, Tikar SN, Sukumaran D, Prakash S, Parashar BD, Shouche YS, Veer V. | PLoS One | 10.1371/journal.pone.0080453 | 2013 | ||
| Phylogeny | Bruker biotyper matrix-assisted laser desorption ionization-time of flight mass spectrometry system for identification of Nocardia, Rhodococcus, Kocuria, Gordonia, Tsukamurella, and Listeria species. | Hsueh PR, Lee TF, Du SH, Teng SH, Liao CH, Sheng WH, Teng LJ. | J Clin Microbiol | 10.1128/jcm.00456-14 | 2014 | |
| Enzymology | Effects of high hydrostatic pressure on coastal bacterial community abundance and diversity. | Marietou A, Bartlett DH. | Appl Environ Microbiol | 10.1128/aem.02109-14 | 2014 | |
| Pathogenicity | Analysis of plant-bacteria interactions in their native habitat: bacterial communities associated with wild tobacco are independent of endogenous jasmonic acid levels and developmental stages. | Santhanam R, Groten K, Meldau DG, Baldwin IT. | PLoS One | 10.1371/journal.pone.0094710 | 2014 | |
| Phylogeny | Temporal variability of the bioaerosol background at a subway station: concentration level, size distribution, and diversity of airborne bacteria. | Dybwad M, Skogan G, Blatny JM. | Appl Environ Microbiol | 10.1128/aem.02849-13 | 2014 | |
| Phylogeny | Taxonomy, Physiology, and Natural Products of Actinobacteria. | Barka EA, Vatsa P, Sanchez L, Gaveau-Vaillant N, Jacquard C, Meier-Kolthoff JP, Klenk HP, Clement C, Ouhdouch Y, van Wezel GP. | Microbiol Mol Biol Rev | 10.1128/mmbr.00019-15 | 2016 | |
| Headspace/GC-MS Analysis and Investigation of Antibacterial, Antioxidant and Cytotoxic Activity of Essential Oils and Hydrolates from Rosmarinus officinalis L. and Lavandula angustifolia Miller. | Garzoli S, Laghezza Masci V, Franceschi S, Tiezzi A, Giacomello P, Ovidi E | Foods | 10.3390/foods10081768 | 2021 | ||
| Laurus nobilis, Salvia sclarea and Salvia officinalis Essential Oils and Hydrolates: Evaluation of Liquid and Vapor Phase Chemical Composition and Biological Activities. | Ovidi E, Laghezza Masci V, Zambelli M, Tiezzi A, Vitalini S, Garzoli S | Plants (Basel) | 10.3390/plants10040707 | 2021 | ||
| Phylogeny | Isolation, purification, structural elucidation and antimicrobial activities of kocumarin, a novel antibiotic isolated from actinobacterium Kocuria marina CMG S2 associated with the brown seaweed Pelvetia canaliculata. | Uzair B, Menaa F, Khan BA, Mohammad FV, Ahmad VU, Djeribi R, Menaa B | Microbiol Res | 10.1016/j.micres.2017.10.007 | 2017 | |
| Enzymology | Kocuria gwangalliensis sp. nov., an actinobacterium isolated from seawater. | Seo YB, Kim DE, Kim GD, Kim HW, Nam SW, Kim YT, Lee JH. | Int J Syst Evol Microbiol | 10.1099/ijs.0.008482-0 | 2009 | |
| Phylogeny | Kocuria atrinae sp. nov., isolated from traditional Korean fermented seafood. | Park EJ, Kim MS, Roh SW, Jung MJ, Bae JW. | Int J Syst Evol Microbiol | 10.1099/ijs.0.014506-0 | 2010 | |
| Phylogeny | Kocuria tytonis sp. nov., isolated from the uropygial gland of an American barn owl (Tyto furcata). | Braun MS, Wang E, Zimmermann S, Wagner H, Wink M | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003170 | 2019 | |
| Phylogeny | Kocuria pelophila sp. nov., an actinobacterium isolated from the rhizosphere of a mangrove. | Hamada M, Shibata C, Tamura T, Nurkanto A, Ratnakomala S, Lisdiyanti P, Suzuki KI | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001186 | 2016 | |
| Phylogeny | Kocuria indica sp. nov., isolated from a sediment sample. | Dastager SG, Tang SK, Srinivasan K, Lee JC, Li WJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.052548-0 | 2013 | |
| Phylogeny | Kocuria marina sp. nov., a novel actinobacterium isolated from marine sediment. | Kim SB, Nedashkovskaya OI, Mikhailov VV, Han SK, Kim KO, Rhee MS, Bae KS | Int J Syst Evol Microbiol | 10.1099/ijs.0.02742-0 | 2004 |
| #6441 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16420 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #26326 | IJSEM 1617 2004 ( DOI 10.1099/ijs.0.02742-0 , PubMed 15388718 ) |
| #29957 | Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26326 |
| #59189 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 51442 |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #67771 | Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC; |
| #68379 | Automatically annotated from API Coryne . |
| #68382 | Automatically annotated from API zym . |
| #69279 | Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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