Name: Pseudarthrobacter defluvii 4C1-a
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7620

Type strain:

Species: Pseudarthrobacter defluvii

Strain Designation: 4C1-a

Culture col. no.: DSM 18782, KCTC 19209

Strain history: <- KK Kim, KAIST

NCBI tax ID(s): 410837 (species)

SI-ID 407148

DSM 18782

Section

Pseudarthrobacter defluvii 4C1-a is an aerobe, mesophilic, Gram-positive bacterium that was isolated from sewage.

Gram-positive
ovoid-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Micrococcaceae*
	Genus	*Pseudarthrobacter*
	Species	**Pseudarthrobacter defluvii**
	Full Scientific Name (LPSN)	Pseudarthrobacter defluvii (Kim et al. 2008) Busse 2016

Synonym

Arthrobacter defluvii

Information on morphological and physiological properties Morphology

[Ref.: #32477]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive

[Ref.: #32477]	Cell length	01-02 µm

[Ref.: #32477]	Cell width	0.4-0.6 µm

[Ref.: #32477]	Cell shape	ovoid-shaped

[Ref.: #32477]	Motility	no

[Ref.: #18326]	Colony color	Ivory (1014)
[Ref.: #18326]	Incubation period	10-14 days
[Ref.: #18326]	Cultivation medium used	ISP 2

[Ref.: #18326]	Colony color	Ivory (1014)
[Ref.: #18326]	Incubation period	10-14 days
[Ref.: #18326]	Cultivation medium used	ISP 3

[Ref.: #18326]	Colony color	Ivory (1014)
[Ref.: #18326]	Incubation period	10-14 days
[Ref.: #18326]	Cultivation medium used	ISP 4

[Ref.: #18326]	Colony color	Ivory (1014)
[Ref.: #18326]	Incubation period	10-14 days
[Ref.: #18326]	Cultivation medium used	ISP 5

[Ref.: #18326]	Colony color	Ivory (1014)
[Ref.: #18326]	Incubation period	10-14 days
[Ref.: #18326]	Cultivation medium used	ISP 6

[Ref.: #18326]	Colony color	Ivory (1014)
[Ref.: #18326]	Incubation period	10-14 days
[Ref.: #18326]	Cultivation medium used	ISP 7

[Ref.: #32477]

Pigment production

yes

[Ref.: #18326]	Multicellular complex forming ability	no
[Ref.: #18326]	Medium Name (multicellularity)	ISP 2

[Ref.: #18326]	Multicellular complex forming ability	no
[Ref.: #18326]	Medium Name (multicellularity)	ISP 3

[Ref.: #18326]	Multicellular complex forming ability	no
[Ref.: #18326]	Medium Name (multicellularity)	ISP 4

[Ref.: #18326]	Multicellular complex forming ability	no
[Ref.: #18326]	Medium Name (multicellularity)	ISP 5

[Ref.: #18326]	Multicellular complex forming ability	no
[Ref.: #18326]	Medium Name (multicellularity)	ISP 6

[Ref.: #18326]	Multicellular complex forming ability	no
[Ref.: #18326]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7694]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #7694]

Culture medium growth

[Ref.: #7694]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7694]

Culture medium composition

expand / minimize

[Ref.: #18326]

Culture medium

ISP 2

[Ref.: #18326]

Culture medium growth

[Ref.: #18326]

Culture medium composition

expand / minimize

[Ref.: #18326]

Culture medium

ISP 3

[Ref.: #18326]

Culture medium growth

[Ref.: #18326]

Culture medium composition

expand / minimize

[Ref.: #18326]

Culture medium

ISP 4

[Ref.: #18326]

Culture medium growth

[Ref.: #18326]

Culture medium composition

expand / minimize

[Ref.: #18326]

Culture medium

ISP 5

[Ref.: #18326]

Culture medium growth

[Ref.: #18326]

Culture medium composition

expand / minimize

[Ref.: #18326]

Culture medium

ISP 6

[Ref.: #18326]

Culture medium growth

[Ref.: #18326]

Culture medium composition

expand / minimize

[Ref.: #18326]

Culture medium

ISP 7

[Ref.: #18326]

Culture medium growth

[Ref.: #18326]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7694]	growth	28 °C
[Ref.: #18326]	optimum	28 °C
[Ref.: #32477]	growth	05-37 °C
[Ref.: #32477]	optimum	25-30 °C
[Ref.: #67771]	growth	25 °C

[Ref.: #7694]	Temperature range	mesophilic
[Ref.: #18326]	Temperature range	mesophilic
[Ref.: #32477]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32477]			optimum	07-08
[Ref.: #32477]			growth	06-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32477]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #32477]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32477]		NaCl		growth	0-5	%
[Ref.: #32477]		NaCl		optimum	0-5	%

[Ref.: #7694]	Murein short key	A11.23
[Ref.: #7694]	Murein types	A3alpha L-Lys-L-Ser-L-Thr-L-Ala

[Ref.: #32477]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32477]	2-dehydro-D-gluconate ChEBI	+	carbon source
[Ref.: #32477]	3-hydroxybenzoate ChEBI	+	carbon source
[Ref.: #32477]	3-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #32477]	5-dehydro-D-gluconate ChEBI	+	carbon source
[Ref.: #32477]	acetate ChEBI	+	carbon source
[Ref.: #32477]	alanine ChEBI	+	carbon source
[Ref.: #32477]	arabinose ChEBI	+	carbon source
[Ref.: #32477]	citrate ChEBI	+	carbon source
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #32477]	esculin ChEBI	+	hydrolysis
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #32477]	fucose ChEBI	+	carbon source
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #32477]	gluconate ChEBI	+	carbon source
[Ref.: #32477]	glucose ChEBI	+	carbon source
[Ref.: #32477]	glycogen ChEBI	+	carbon source
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #32477]	histidine ChEBI	+	carbon source
[Ref.: #32477]	lactate ChEBI	+	carbon source
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #32477]	malate ChEBI	+	carbon source
[Ref.: #32477]	malonate ChEBI	+	carbon source
[Ref.: #32477]	maltose ChEBI	+	carbon source
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #32477]	mannitol ChEBI	+	carbon source
[Ref.: #32477]	mannose ChEBI	+	carbon source
[Ref.: #32477]	melibiose ChEBI	+	carbon source
[Ref.: #32477]	nitrate ChEBI	+	reduction
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #32477]	phenylacetate ChEBI	+	carbon source
[Ref.: #32477]	proline ChEBI	+	carbon source
[Ref.: #32477]	propionate ChEBI	+	carbon source
[Ref.: #32477]	rhamnose ChEBI	+	carbon source
[Ref.: #32477]	ribose ChEBI	+	carbon source
[Ref.: #32477]	salicin ChEBI	+	carbon source
[Ref.: #32477]	serine ChEBI	+	carbon source
[Ref.: #32477]	sucrose ChEBI	+	carbon source
[Ref.: #68379]	sucrose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #32477]	valerate ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym, API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	+	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym, API Coryne
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym, API Coryne
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne
[Ref.: #68379]	beta-glucuronidase	+	3.2.1.31	* from API Coryne
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #32477]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym, API Coryne
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68379]	urease	+	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #18326]	226	-	-	+	-	+	+	+	-	-	+	-	not determinedn.d.	-	-	-	-	-	-	+	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18326]	36	not determinedn.d.	-	+	+	-	+	-	-	+	-	-	-	+	+	-	+	+	-	+	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7694]	Sample type/isolated from	sewage
[Ref.: #7694]	Geographic location (country and/or sea, region)	Geumho River in Daegu
[Ref.: #7694]	Country	Republic of Korea
[Ref.: #7694]	Country ISO 3 Code	KOR
[Ref.: #7694]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From sewage
[Ref.: #67771]	Geographic location (country and/or sea, region)	Geumho River, Daegu
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered

#Waste

#Wastewater

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18326]	Biosafety level	1	German classification
[Ref.: #7694]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7694]	Arthrobacter defluvii partial 16S rRNA gene, type strain 4C1-aT	AM409361	1463	ENA	410837 tax ID

[Ref.: #7694]	GC-content	64.4 mol%
[Ref.: #32477]	GC-content	63.5-64.4 mol%

Availability in culture collections External links

[Ref.: #7694]

Culture collection no.

DSM 18782, KCTC 19209

[Ref.: #77064]

SI-ID 407148

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Arthrobacter enclensis sp. nov., isolated from sediment sample.	Dastager SG, Liu Q, Tang SK, Krishnamurthi S, Lee JC, Li WJ	Arch Microbiol	10.1007/s00203-014-1016-9	2014	*
Phylogeny	Arthrobacter defluvii sp. nov., 4-chlorophenol-degrading bacteria isolated from sewage.	Kim KK, Lee KC, Oh HM, Kim MJ, Eom MK, Lee JS	Int J Syst Evol Microbiol	10.1099/ijs.0.65550-0	2008	*

References

#7694

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18782

#18326

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32477

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28697 (see below)

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#77064

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407148.1 )

#28697

IJSEM 1916 2008 ( DOI 10.1099/ijs.0.65550-0 , PubMed 18676480 )

* These data were automatically processed and therefore are not curated

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