Name: Arthrobacter humicola KV-653
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 7617

Type strain:

Species: Arthrobacter humicola

Strain Designation: KV-653

Culture col. no.: DSM 25587, JCM 15921, NBRC 102056, NRRL B-24479

Strain history: NRRL B-24479 <-- S. ?mura KV-653.

NCBI tax ID(s): 409291 (species)

SI-ID 396638

DSM 25587

Special Collections

Section

Arthrobacter humicola KV-653 is an aerobe, Gram-positive, motile bacterium that was isolated from paddy soil.

Gram-positive
motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Micrococcaceae*
	Genus	*Arthrobacter*
	Species	**Arthrobacter humicola**
	Full Scientific Name (LPSN)	Arthrobacter humicola Kageyama et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32047]	Gram stain	positive

[Ref.: #32047]	Cell shape	rod-shaped

[Ref.: #32047]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18053]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #18053]

Culture medium growth

[Ref.: #18053]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18053]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #18053]	growth	28 °C
[Ref.: #32047]	growth	04-34 °C
[Ref.: #67770]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #32047]			growth	06-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32047]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32047]		NaCl		growth	<3	%

[Ref.: #67770]

Observation

quinones: MK-9(H₂)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32047]	glucose ChEBI	+	carbon source
[Ref.: #32047]	mannitol ChEBI	+	carbon source
[Ref.: #32047]	melibiose ChEBI	+	carbon source
[Ref.: #32047]	raffinose ChEBI	+	carbon source
[Ref.: #32047]	rhamnose ChEBI	+	carbon source
[Ref.: #32047]	sucrose ChEBI	+	carbon source
[Ref.: #32047]	xylose ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #32047]	acid phosphatase	+	3.1.3.2
[Ref.: #32047]	alpha-galactosidase	+	3.2.1.22
[Ref.: #32047]	catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18053]	Sample type/isolated from	paddy soil
[Ref.: #18053]	Country	Japan
[Ref.: #18053]	Country ISO 3 Code	JPN
[Ref.: #18053]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Paddy soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Saitama Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Engineered	#Agriculture	#Field
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Condition	#Anoxic (anaerobic)	-
#Condition	#Humid	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB279890 (>99% sequence identity) for Arthrobacter from Microbeatlas

Aquatic Samples	364
Soil Samples	2849
Animal Samples	580
Plant Samples	2017
Total Samples	5810

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18053]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18053]	Arthrobacter humicola gene for 16S rRNA, partial sequence	AB279890	1463	GenBank ENA	409291 tax ID

[Ref.: #18053]	GC-content	67 mol%
[Ref.: #67770]	GC-content	67 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #18053]

Culture collection no.

DSM 25587, JCM 15921, NBRC 102056, NRRL B-24479

[Ref.: #77061]

SI-ID 396638

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Micrococcoides hystricis gen. nov., sp. nov., a novel member of the family Micrococcaceae, phylum Actinobacteria.	Toth A, Baka E, Bata-Vidacs I, Luzics S, Kosztik J, Toth E, Keki Z, Schumann P, Tancsics A, Nagy I, Sos E, Kukolya J	Int J Syst Evol Microbiol	10.1099/ijsem.0.002018	2017	*
Phylogeny	Arthrobacter oryzae sp. nov. and Arthrobacter humicola sp. nov.	Kageyama A, Morisaki K, Omura S, Takahashi Y	Int J Syst Evol Microbiol	10.1099/ijs.0.64875-0	2008	*

References

#18053

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25587

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32047

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28297 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#77061

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396638.1 )

#28297

IJSEM 53 2008 ( DOI 10.1099/ijs.0.64875-0 , PubMed 18175682 )

* These data were automatically processed and therefore are not curated

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