Pseudarthrobacter scleromae (DSM 17756, CGMCC 1.3601, JCM 12642)

Name: Pseudarthrobacter scleromae (DSM 17756, CGMCC 1.3601, JCM 12642)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7615

Type strain

Strain Designation YH-2001

Culture col. no. DSM 17756 CGMCC 1.3601 JCM 12642 YH-2001 CIP 108992 1 more

NCBI tax ID(s) 158897

Special Collections DSMZ JCM CIP

History <- Y. Huang <- N. Zhao; YH-2001 Y. Huang YH-2001. CIP <- 2005, Y. Huang, Chinese Academy of Sciences, Beijing, China <- CGMCC <- N. Zhao, Weifang Med. Coll., Weifang, China: strain YH-2001

Links

Pseudarthrobacter scleromae YH-2001 is an obligate aerobe, Gram-positive, oval-shaped bacterium that was isolated from human, swollen scleromata of a dermatosis patient.

Gram-positive oval-shaped obligate aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 231915

JCM 12642,AS 1.3601,CGMCC 1.3601,DSM 17756,CIP 108992

@ref 20215

Last LPSN update 2026-02-09 11:19:30

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Micrococcaceae

Genus Pseudarthrobacter

Species Pseudarthrobacter scleromae

Full scientific name Pseudarthrobacter scleromae (Huang et al. 2005) Busse 2016

Synonyms (1)

Arthrobacter scleromae

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
122524	positive	oval-shaped
125438	positive			91.548

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7170	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
41907	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
122524	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
7170	positive	growth	34
41907	positive	growth	30
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
122524	obligate aerobe
125438	aerobe	90.622
125439	obligate aerobe	94.8

Observation

67770

Observationquinones: MK-8(H₂), MK-9(H₂), MK-8(H₂)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
122524	17632 ChEBI	nitrate	-	reduction
122524	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
122524	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
122524	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	+	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
122524	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
122524	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
122524	ornithine decarboxylase	-	4.1.1.17
122524	oxidase	-
68382	trypsin	+	3.4.21.4	from API zym
122524	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
122524	-	+	+	+	-	+	-	+	+	-	+	+	+	+	-	+	+	-	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Infection	#Inflammation
#Host	#Human

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
7170	human, swollen scleromata of a dermatosis patient	Shang dong	China	CHN	Asia
67770	Swollen scleromata of a dermatosis patient
122524	Human, Clinical specimen		China	CHN	Asia	2001

Taxonmaps

69479

Global distribution of 16S sequence AF330692 (>99% sequence identity) for Pseudarthrobacter from Microbeatlas

Aquatic Samples	109
Soil Samples	822
Animal Samples	156
Plant Samples	439
Total Samples	1526

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
7170	yes, in single cases	1	Risk group (German classification) According to TRBA 466
122524		1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1464451v1 assembly for Pseudarthrobacter scleromae CGMCC 1.3601	scaffold	GCA_014644515	158897.4	8067676127	158897	75
124043	ASM4243380v1 assembly for Pseudarthrobacter scleromae CGMCC 1.3601	scaffold	GCA_042433805			158897	71.77

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7170	Arthrobacter scleromae strain YH-2001 16S ribosomal RNA gene, partial sequence	AF330692	1415		158897
124043	Pseudarthrobacter scleromae strain CGMCC 1.3601 16S ribosomal RNA gene, partial sequence.	MT759862	762		158897

GC content

@ref	GC-content (mol%)	Method
7170	64.7
67770	64.7	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pseudarthrobacter scleromae CGMCC 1.3601
NCBI: GCA_014644515

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	76.50	no
125439	motility	BacteriaNetⓘ	no	51.60	no
125439	gram_stain	BacteriaNetⓘ	positive	81.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	94.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudarthrobacter scleromae CGMCC 1.3601
NCBI: GCA_014644515.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.55	no
125438	anaerobic	anaerobicⓘ	no	98.80	yes
125438	aerobic	aerobicⓘ	yes	90.62	no
125438	spore-forming	spore-formingⓘ	no	63.57	no
125438	thermophilic	thermophileⓘ	no	99.50	yes
125438	flagellated	motile2+ⓘ	no	89.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Paenarthrobacter sp. GOM3 Is a Novel Marine Species With Monoaromatic Degradation Relevance.	Rosas-Diaz J, Escobar-Zepeda A, Adaya L, Rojas-Vargas J, Cuervo-Amaya DH, Sanchez-Reyes A, Pardo-Lopez L.	Front Microbiol	10.3389/fmicb.2021.713702	2021
Phylogeny	Reclassification of Arthrobacter enclensis as Pseudarthrobacter enclensis comb. nov., and emended descriptions of the genus Pseudarthrobacter, and the species Pseudarthrobacter phenanthrenivorans and Pseudarthrobacter scleromae.	Busse HJ, Schumann P	Int J Syst Evol Microbiol	10.1099/ijsem.0.003652	2019
Phylogeny	Arthrobacter ginsengisoli sp. nov., isolated from soil of a ginseng field.	Siddiqi MZ, Kim YJ, Hoang VA, Siddiqi MH, Huq MA, Yang DC	Arch Microbiol	10.1007/s00203-014-1025-8	2014
Phylogeny	Arthrobacter defluvii sp. nov., 4-chlorophenol-degrading bacteria isolated from sewage.	Kim KK, Lee KC, Oh HM, Kim MJ, Eom MK, Lee JS	Int J Syst Evol Microbiol	10.1099/ijs.0.65550-0	2008

References

#7170	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17756
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#41907	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#122524	Collection of Institut Pasteur ; Curators of the CIP; CIP 108992
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudarthrobacter scleromae (DSM 17756, CGMCC 1.3601, JCM 12642)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Observation

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014644515

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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