Name: Arthrobacter agilis 28(3)
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7575

Type strain:

Species: Arthrobacter agilis

Strain Designation: 28(3), W.O. 219, W.O.219

Culture col. no.: DSM 20550, ATCC 966, CCM 2390, NCDO 983, NCTC 7509, CCUG 33025, JCM 2584, CGMCC 1.15723, CIP 81.67, IAM 12848, IFO 15260, IFO 15319, IMSNU 11061, KCTC 3200, LMG 14213, LMG 17244, MTCC 2523, MTCC 3475, NBRC 15260, NBRC 15319, NCIMB 700983, VKM B-1973, VTT E-052921

Strain history: CIP <- 1981, CCM <- L. Jeffries: strain W.O.219 <- ATCC <- M. Levine: strain 28(3), Micrococcus corallinus

NCBI tax ID(s): 37921 (species)

SI-ID 13962

LMG 17244, ATCC 966, CCM 2390, DSM 20550, IFO 15260, IFO 15319, JCM 2584, LMG 14213, NCFB 983, NCTC 7509, VKM B-1973, NCDO 983, CCUG 33025, IAM 12848, NCIMB 700983, CIP 81.67, IMET 11266, KCTC 3200, VKM B-19723, NBRC 15260, NBRC 15319, VTT E-052921

Other strains from Arthrobacter agilis

A. agilis DSM 44212, SWP 3-S
A. agilis STI09590(IMET), N2991, IMET 09705, ...
A. agilis JCM 2585, CCM 2539, IAM 14190, ...
A. agilis JCM 2586, CCM 2687, IAM 14191, ...
A. agilis JCM 2587, CCM 2688, IAM 14192, ...

Section

Arthrobacter agilis 28 is a psychrophilic bacterium of the family Micrococcaceae.

psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Micrococcaceae*
	Genus	*Arthrobacter*
	Species	**Arthrobacter agilis**
	Full Scientific Name (LPSN)	Arthrobacter agilis (Ali-Cohen 1889) Koch et al. 1995

Synonym

Micrococcus agilis

Information on morphological and physiological properties Morphology

[Ref.: #18759]	Colony color	Antique pink
[Ref.: #18759]	Incubation period	10-14 days
[Ref.: #18759]	Cultivation medium used	ISP 2

[Ref.: #18759]	Colony color	Light pink
[Ref.: #18759]	Incubation period	10-14 days
[Ref.: #18759]	Cultivation medium used	ISP 3

[Ref.: #18759]	Colony color	Antique pink
[Ref.: #18759]	Incubation period	10-14 days
[Ref.: #18759]	Cultivation medium used	ISP 4

[Ref.: #18759]	Colony color	Antique pink
[Ref.: #18759]	Incubation period	10-14 days
[Ref.: #18759]	Cultivation medium used	ISP 5

[Ref.: #18759]	Colony color	Strawberry red
[Ref.: #18759]	Incubation period	10-14 days
[Ref.: #18759]	Cultivation medium used	ISP 6

[Ref.: #18759]	Colony color	Antique pink
[Ref.: #18759]	Incubation period	10-14 days
[Ref.: #18759]	Cultivation medium used	ISP 7

[Ref.: #18759]	Multicellular complex forming ability	no
[Ref.: #18759]	Medium Name (multicellularity)	ISP 2

[Ref.: #18759]	Multicellular complex forming ability	no
[Ref.: #18759]	Medium Name (multicellularity)	ISP 3

[Ref.: #18759]	Multicellular complex forming ability	no
[Ref.: #18759]	Medium Name (multicellularity)	ISP 4

[Ref.: #18759]	Multicellular complex forming ability	no
[Ref.: #18759]	Medium Name (multicellularity)	ISP 5

[Ref.: #18759]	Multicellular complex forming ability	no
[Ref.: #18759]	Medium Name (multicellularity)	ISP 6

[Ref.: #18759]	Multicellular complex forming ability	no
[Ref.: #18759]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8900]

Culture medium

CORYNEBACTERIUM AGAR (DSMZ Medium 53)

[Ref.: #8900]

Culture medium growth

[Ref.: #8900]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8900]

Culture medium composition

expand / minimize

[Ref.: #18759]

Culture medium

ISP 2

[Ref.: #18759]

Culture medium growth

[Ref.: #18759]

Culture medium composition

expand / minimize

[Ref.: #18759]

Culture medium

ISP 3

[Ref.: #18759]

Culture medium growth

[Ref.: #18759]

Culture medium composition

expand / minimize

[Ref.: #18759]

Culture medium

ISP 4

[Ref.: #18759]

Culture medium growth

[Ref.: #18759]

Culture medium composition

expand / minimize

[Ref.: #18759]

Culture medium

ISP 5

[Ref.: #18759]

Culture medium growth

[Ref.: #18759]

Culture medium composition

expand / minimize

[Ref.: #18759]

Culture medium

ISP 6

[Ref.: #18759]

Culture medium growth

[Ref.: #18759]

Culture medium composition

expand / minimize

[Ref.: #18759]

Culture medium

ISP 7

[Ref.: #18759]

Culture medium growth

[Ref.: #18759]

Culture medium composition

expand / minimize

[Ref.: #37335]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #37335]

Culture medium growth

[Ref.: #37335]

Culture medium composition

expand / minimize

[Ref.: #116158]

Culture medium

CIP Medium 3

[Ref.: #116158]

Culture medium growth

[Ref.: #116158]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #8900]	growth	22 °C
[Ref.: #37335]	growth	25 °C
[Ref.: #51328]	growth	25 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #8900]	Temperature range	psychrophilic
[Ref.: #37335]	Temperature range	mesophilic
[Ref.: #51328]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #18759]		NaCl		maximum	5	%

[Ref.: #8900]	Murein short key	A11.28
[Ref.: #8900]	Murein types	A3alpha L-Lys-L-Thr-L-Ala₃

[Ref.: #67770]

Observation

quinones: MK-9(H₂)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18759]	238	-	+	+	+	-	-	+	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18759]	326	not determinedn.d.	-	-	+	-	-	+	+	+	-	+	-	-	+	-	+	+	-	-	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	phenylacetate degradation (aerobic)	100	5 of 5
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	cardiolipin biosynthesis	100	7 of 7
[Ref.: #66794]	lipoate biosynthesis	100	5 of 5
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	valine metabolism	100	9 of 9
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	cellulose degradation	100	5 of 5
[Ref.: #66794]	ceramide biosynthesis	100	1 of 1
[Ref.: #66794]	glycolysis	94.12	16 of 17
[Ref.: #66794]	Entner Doudoroff pathway	90	9 of 10
[Ref.: #66794]	threonine metabolism	90	9 of 10
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	pentose phosphate pathway	81.82	9 of 11
[Ref.: #66794]	ethylmalonyl-CoA pathway	80	4 of 5
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	flavin biosynthesis	80	12 of 15
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	heme metabolism	78.57	11 of 14
[Ref.: #66794]	glutamate and glutamine metabolism	78.57	22 of 28
[Ref.: #66794]	citric acid cycle	78.57	11 of 14
[Ref.: #66794]	tetrahydrofolate metabolism	78.57	11 of 14
[Ref.: #66794]	CO2 fixation in Crenarchaeota	77.78	7 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	77.78	7 of 9
[Ref.: #66794]	phenylalanine metabolism	76.92	10 of 13
[Ref.: #66794]	leucine metabolism	76.92	10 of 13
[Ref.: #66794]	pyrimidine metabolism	75.56	34 of 45
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	gluconeogenesis	75	6 of 8
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	ketogluconate metabolism	75	6 of 8
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	C4 and CAM-carbon fixation	75	6 of 8
[Ref.: #66794]	metabolism of disaccharids	72.73	8 of 11
[Ref.: #66794]	NAD metabolism	72.22	13 of 18
[Ref.: #66794]	propanol degradation	71.43	5 of 7
[Ref.: #66794]	ubiquinone biosynthesis	71.43	5 of 7
[Ref.: #66794]	propionate fermentation	70	7 of 10
[Ref.: #66794]	4-hydroxyphenylacetate degradation	70	7 of 10
[Ref.: #66794]	myo-inositol biosynthesis	70	7 of 10
[Ref.: #66794]	vitamin B1 metabolism	69.23	9 of 13
[Ref.: #66794]	purine metabolism	69.15	65 of 94
[Ref.: #66794]	histidine metabolism	68.97	20 of 29
[Ref.: #66794]	degradation of sugar alcohols	68.75	11 of 16
[Ref.: #66794]	non-pathway related	68.42	26 of 38
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	enterobactin biosynthesis	66.67	2 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	IAA biosynthesis	66.67	2 of 3
[Ref.: #66794]	d-mannose degradation	66.67	6 of 9
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	glycolate and glyoxylate degradation	66.67	4 of 6
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	tryptophan metabolism	65.79	25 of 38
[Ref.: #66794]	alanine metabolism	65.52	19 of 29
[Ref.: #66794]	phenol degradation	65	13 of 20
[Ref.: #66794]	lipid metabolism	64.52	20 of 31
[Ref.: #66794]	proline metabolism	63.64	7 of 11
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	isoprenoid biosynthesis	61.54	16 of 26
[Ref.: #66794]	degradation of pentoses	60.71	17 of 28
[Ref.: #66794]	metabolism of amino sugars and derivatives	60	3 of 5
[Ref.: #66794]	gallate degradation	60	3 of 5
[Ref.: #66794]	glutathione metabolism	57.14	8 of 14
[Ref.: #66794]	aspartate and asparagine metabolism	55.56	5 of 9
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	vitamin B6 metabolism	54.55	6 of 11
[Ref.: #66794]	arginine metabolism	54.17	13 of 24
[Ref.: #66794]	urea cycle	53.85	7 of 13
[Ref.: #66794]	3-phenylpropionate degradation	53.33	8 of 15
[Ref.: #66794]	oxidative phosphorylation	50.55	46 of 91
[Ref.: #66794]	lysine metabolism	50	21 of 42
[Ref.: #66794]	alginate biosynthesis	50	2 of 4
[Ref.: #66794]	dTDPLrhamnose biosynthesis	50	4 of 8
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	degradation of hexoses	50	9 of 18
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	vitamin E metabolism	50	2 of 4
[Ref.: #66794]	suberin monomers biosynthesis	50	1 of 2
[Ref.: #66794]	methionine metabolism	46.15	12 of 26
[Ref.: #66794]	d-xylose degradation	45.45	5 of 11
[Ref.: #66794]	androgen and estrogen metabolism	43.75	7 of 16
[Ref.: #66794]	benzoyl-CoA degradation	42.86	3 of 7
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
[Ref.: #66794]	ascorbate metabolism	40.91	9 of 22
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	glycine betaine biosynthesis	40	2 of 5
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	3-chlorocatechol degradation	40	2 of 5
[Ref.: #66794]	carotenoid biosynthesis	36.36	8 of 22
[Ref.: #66794]	polyamine pathway	34.78	8 of 23
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	lipid A biosynthesis	33.33	3 of 9
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	pantothenate biosynthesis	33.33	2 of 6
[Ref.: #66794]	nitrate assimilation	33.33	3 of 9
[Ref.: #66794]	phenylpropanoid biosynthesis	30.77	4 of 13
[Ref.: #66794]	sulfate reduction	30.77	4 of 13
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	30.77	4 of 13
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	29.41	5 of 17
[Ref.: #66794]	mevalonate metabolism	28.57	2 of 7
[Ref.: #66794]	tyrosine metabolism	28.57	4 of 14
[Ref.: #66794]	aclacinomycin biosynthesis	28.57	2 of 7
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	cholesterol biosynthesis	27.27	3 of 11
[Ref.: #66794]	carnitine metabolism	25	2 of 8
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	CMP-KDO biosynthesis	25	1 of 4
[Ref.: #66794]	biotin biosynthesis	25	1 of 4
[Ref.: #66794]	degradation of sugar acids	24	6 of 25
[Ref.: #66794]	allantoin degradation	22.22	2 of 9
[Ref.: #66794]	arachidonic acid metabolism	22.22	4 of 18
		Only first 10 entries are displayed. Click here to see all.

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18759]	Biosafety level	1	Hazard group
[Ref.: #8900]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116158]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	M.agilis 16S rDNA	X80748	1482	ENA	37921 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Arthrobacter agilis CGMCC 1.15723	GCA_002927255	contig	GenBank	37921 tax ID
[Ref.: #67770]	Arthrobacter agilis DSM 20550	GCA_006494655	contig	GenBank	37921 tax ID
[Ref.: #66792]	Arthrobacter agilis strain CGMCC 1.15723	37921.13	wgs	PATRIC	37921 tax ID	*
[Ref.: #66792]	Arthrobacter agilis strain DSM 20550	37921.16	wgs	PATRIC	37921 tax ID	*
[Ref.: #66792]	Arthrobacter agilis CGMCC 1.15723	2869312753	draft	JGI IMG/M	37921 tax ID	*

[Ref.: #8900]	GC-content	69.0 mol%
[Ref.: #67770]	GC-content	69 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	62 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Arthrobacter agilis strain CGMCC 1.15723 PATRIC: 37921.13
[Ref.: #69480]	gram-positive	yes	92.979	no
[Ref.: #69480]	anaerobic	no	99.707	no
[Ref.: #69480]	halophile	no	77.723	no
[Ref.: #69480]	spore-forming	no	92.307	no
[Ref.: #69480]	glucose-util	yes	84.989	no
[Ref.: #69480]	aerobic	yes	96.452	no
[Ref.: #69480]	motile	yes	63.745	no
[Ref.: #69480]	flagellated	no	90.725	no
[Ref.: #69480]	thermophile	no	98.338	yes
[Ref.: #69480]	glucose-ferment	no	88.593	no

Availability in culture collections External links

[Ref.: #8900]

Culture collection no.

DSM 20550, ATCC 966, CCM 2390, NCDO 983, NCTC 7509, CCUG 33025, JCM 2584, CGMCC 1.15723, CIP 81.67, IAM 12848, IFO 15260, IFO 15319, IMSNU 11061, KCTC 3200, LMG 14213, LMG 17244, MTCC 2523, MTCC 3475, NBRC 15260, NBRC 15319, NCIMB 700983, VKM B-1973, VTT E-052921

[Ref.: #77020]

SI-ID 13962

Literature:

Only first 10 entries are displayed. Click here to see all.

	Title	Authors	Journal	DOI	Year
Phylogeny	Arthrobacter crusticola sp. nov., Isolated from Biological Soil Crusts in the Mu Us Sandy Land, China.	Liu L, Liang L, He S, Xu L, Chi M, Shi S, Zhang X, Li L	Curr Microbiol	10.1007/s00284-020-02070-8	2020	*
Phylogeny	Arthrobacter bussei sp. nov., a pink-coloured organism isolated from cheese made of cow's milk.	Flegler A, Runzheimer K, Kombeitz V, Manz AT, Heidler von Heilborn D, Etzbach L, Schieber A, Holzl G, Huttel B, Woehle C, Lipski A	Int J Syst Evol Microbiol	10.1099/ijsem.0.004125	2020	*
Phylogeny	Arthrobacter ruber sp. nov., isolated from glacier ice.	Liu Q, Xin YH, Chen XL, Liu HC, Zhou YG, Chen WX	Int J Syst Evol Microbiol	10.1099/ijsem.0.002719	2018	*
Phylogeny	Arthrobacter echini sp. nov., isolated from the gut of a purple sea urchin, Heliocidaris crassispina.	Lee JY, Hyun DW, Soo Kim P, Sik Kim H, Shin NR, Yun JH, Jung MJ, Kim MS, Woong Whon T, Bae JW	Int J Syst Evol Microbiol	10.1099/ijsem.0.000965	2016	*
Phylogeny	Arthrobacter pityocampae sp. nov., isolated from Thaumetopoea pityocampa (Lep., Thaumetopoeidae).	Ince IA, Demirbag Z, Kati H	Int J Syst Evol Microbiol	10.1099/ijs.0.060731-0	2014	*
Phylogeny	Reclassification of Micrococcus agilis (Ali-Cohen 1889) to the genus Arthrobacter as Arthrobacter agilis comb. nov. and emendation of the genus Arthrobacter.	Koch C, Schumann P, Stackebrandt E	Int J Syst Bacteriol	10.1099/00207713-45-4-837	1995	*
	The C50 carotenoid bacterioruberin regulates membrane fluidity in pink-pigmented Arthrobacter species.	Flegler A, Lipski A	Arch Microbiol	10.1007/s00203-021-02719-3	2021	*

References

#8900

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20550

#18759

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#37335 ; Curators of the CIP;
#51328 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 33025

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#77020

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID13962.1 )

#116158 Collection of Institut Pasteur ; Curators of the CIP; CIP 81.67
* These data were automatically processed and therefore are not curated

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Arthrobacter agilis strain CGMCC 1.15723

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