Pseudarthrobacter oxydans (DSM 20119, ATCC 14358, NCIB 9333)

Name: Pseudarthrobacter oxydans (DSM 20119, ATCC 14358, NCIB 9333)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7529

Type strain

Strain Designation Xanthum

Culture col. no. DSM 20119 ATCC 14358 NCIB 9333 CCUG 17757 CIP 107005 17 more

NCBI tax ID(s) 1671

Special Collections DSMZ CCUG JCM KCTC CIP Wink compendium JMRC

History DSMZ <- ATCC <- R.J. Reynolds Tobacco Co., strain Xanthum JCM <-- ATCC 14358 <-- R. J. Reynolds Tobacco Co.; strain Xanthum. CIP <- 2001, CCUG <- 1985, DSMZ <- ATCC <- R.J. Reynolds Tobacco Co: strain Xanthum

Links

Pseudarthrobacter oxydans Xanthum is an aerobe, Gram-positive, oval-shaped bacterium that was isolated from air.

Gram-positive oval-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 13578

LMG 3816,ATCC 14358,CCUG 17757,CECT 386,DSM 20119,IFO 12138,IMET 10684,JCM 2521,NCIB 9333,CIP 107005,CCRC 11573,NCIMB 9333,VKM Ac-1114,KCTC 3383,AS 1.1925,NBRC 12138,BCRC 11573,HAMBI 1857,CCT 3027,IAM 14589,CGMCC 1.1925

@ref 20215

Last LPSN update 2026-05-29 08:26:40

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Micrococcaceae

Genus Pseudarthrobacter

Species Pseudarthrobacter oxydans

Full scientific name Pseudarthrobacter oxydans (Sguros 1954) Busse 2016

Synonyms (1)

Arthrobacter oxydans

BacDive ID	Other strains from **Pseudarthrobacter oxydans** (6)	Type strain
7526	P. oxydans DSM 6612, CBS 2
7527	P. oxydans CF39, DSM 13065
7528	P. oxydans CF46, DSM 13066
7530	P. oxydans Album, DSM 20120, ATCC 14359, NCIB 9334, ...
144236	P. oxydans CCUG 23890, LMG 3817
145058	P. oxydans CCUG 27537, ATCC 21374, NCTC 10950

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
121482	positive	oval-shaped

Colony morphology

@ref	Colony color	Incubation period	Medium used	Hemolysis ability
18622	Ivory (1014)	10-14 days	ISP 2
18622	Light ivory (1015)	10-14 days	ISP 3
121482				0

Multicellular morphology

@ref	Forms multicellular complex	Medium name
18622		ISP 2
18622		ISP 3

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
18622	ISP 2		Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
18622	ISP 3		Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
33034	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
8544	CORYNEBACTERIUM AGAR (DSMZ Medium 53)	Medium recipe at MediaDive	Name: CORYNEBACTERIUM AGAR (DSMZ Medium 53) Composition: Agar 15.0 g/l Casein peptone 10.0 g/l NaCl 5.0 g/l Glucose 5.0 g/l Yeast extract 5.0 g/l Distilled water
121482	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
8544	positive	growth	30
18622	positive	optimum	28
33034	positive	growth	30
46682	positive	growth	30-37
67770	positive	growth	30
121482	positive	growth	10-41
121482	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
46682	aerobe
121482	obligate aerobe
125439	obligate aerobe	95.061

Spore formation

@ref	Spore formation	Confidence
125439		97.311

Compound production

@ref	Compound
8544	nicotinblue I
8544	nicotinblue II

Halophily

@ref	Salt	Growth	Tested relation	Concentration
18622	NaCl	positive	growth	0 %
121482	NaCl	positive	growth	0-6 %
121482	NaCl		growth	8 %
121482	NaCl		growth	10 %

Murein

@ref	Murein short key	Type
8544	A11.23	A3alpha L-Lys-L-Ser-L-Thr-L-Ala

Observation

67770

Observationquinones: MK-9(H₂)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
18622	22599 ChEBI	arabinose	+
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
18622	62968 ChEBI	cellulose	+
121482	16947 ChEBI	citrate	-	carbon source
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68379	17634 ChEBI	D-glucose	+	fermentation	from API Coryne
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68379	16899 ChEBI	D-mannitol	+	fermentation	from API Coryne
68371	16899 ChEBI	D-mannitol	+	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68379	16988 ChEBI	D-ribose	+	fermentation	from API Coryne
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	+	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68371	65327 ChEBI	D-xylose	+	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
121482	4853 ChEBI	esculin	+	hydrolysis
18622	28757 ChEBI	fructose	+
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68379	5291 ChEBI	gelatin	+	hydrolysis	from API Coryne
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
18622	17234 ChEBI	glucose	+
68371	17754 ChEBI	glycerol	+	builds acid from	from API 50CH acid
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
121482	606565 ChEBI	hippurate	+	hydrolysis
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	+	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	+	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68371	17306 ChEBI	maltose	-	builds acid from	from API 50CH acid
18622	29864 ChEBI	mannitol	+
68371	6731 ChEBI	melezitose	+	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	+	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
18622	17268 ChEBI	myo-inositol	+
68371	17268 ChEBI	myo-inositol	+	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
121482	17632 ChEBI	nitrate	+	reduction
121482	17632 ChEBI	nitrate	-	respiration
121482	16301 ChEBI	nitrite	-	reduction
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68371	0 ChEBI	Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371	0 ChEBI	Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
18622	16634 ChEBI	raffinose	+
68371	16634 ChEBI	raffinose	+	builds acid from	from API 50CH acid
18622	26546 ChEBI	rhamnose	+
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
18622	17992 ChEBI	sucrose	+
68379	17992 ChEBI	sucrose	+	fermentation	from API Coryne
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68379	16199 ChEBI	urea	+	hydrolysis	from API Coryne
68368	16199 ChEBI	urea	+	hydrolysis	from API 20E
68371	17151 ChEBI	xylitol	+	builds acid from	from API 50CH acid
18622	18222 ChEBI	xylose	+

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
121482	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
121482	35581 ChEBI	indole
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test	Indole test
121482	15688 ChEBI	acetoin	+
68368	15688 ChEBI	acetoin	-			from API 20E
121482	17234 ChEBI	glucose		+
68368	35581 ChEBI	indole			-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
121482	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68379	alpha-glucosidase	+	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
121482	amylase	+
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68382	beta-galactosidase	+	3.2.1.23	from API zym
121482	beta-galactosidase	+	3.2.1.23
68379	beta-galactosidase	+	3.2.1.23	from API Coryne
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68382	beta-glucosidase	-	3.2.1.21	from API zym
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
121482	caseinase	+	3.4.21.50
121482	catalase	+	1.11.1.6
68379	catalase	+	1.11.1.6	from API Coryne
121482	DNase	-
121482	gamma-glutamyltransferase	+	2.3.2.2
121482	gelatinase	+
68379	gelatinase	+		from API Coryne
68368	gelatinase	-		from API 20E
121482	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
121482	lipase	-
68382	lipase (C 14)	-		from API zym
121482	lysine decarboxylase	-	4.1.1.18
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
121482	ornithine decarboxylase	-	4.1.1.17
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
121482	oxidase	-
121482	phenylalanine ammonia-lyase	-	4.3.1.24
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	+	3.4.19.3	from API Coryne
68382	trypsin	+	3.4.21.4	from API zym
121482	tryptophan deaminase	-
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
121482	tween esterase	-
121482	urease	-	3.5.1.5
68379	urease	+	3.5.1.5	from API Coryne
68368	urease	+	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
18622	+	-	-	-	-	-	+	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
18622	-	-	+	-	+	+	+	+	-	+	+	not determinedn.d.	+	+	-	+	-	-	+	-	not determinedn.d.
46682	+	-	+	+	-	+	+	-	-	+	+	-	not determinedn.d.	+	-	+	+	+	+	-	+

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
18622	not determinedn.d.	+	-	+	-	+	+	+	+	-	+	+	+	+	-	+	-	-	-	-
121482	-	+	+	-	-	+	-	-	+	-	+	+	+	+	-	+	-	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
121482	not determinedn.d.	+	-	-	+	+	+	-	-	-	+	+	+	+	-	+	-	+	+	+	-	-	+	-	-	+/-	-	-	-	-	+	+	-	-	+	+	-	-	+	-	+/-	-	-	-	-	-	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
121482	not determinedn.d.	+	+	+	+	+	-	+	+	+	+	+	+	+	+	-	+	+	+	+	-	+	+	+	-	-	+	-	+	+	-	-	+	+	+	+	+	+	-	-	-	-	-	-	-	-	+	-	-	-	+	+	+	-	+	-	-	+	-	-	+	+	+	+	+	+	+	+	-	-	-	-	+	+	+	-	+	-	-	-	+	+	-	-	-	-	-	+	-	+	+	+	+	-	+	+	-	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Environmental	#Air

Isolation

@ref	Sample type	Isolation date
8544	air
46682	Air
67770	Air
121482	Environment, Air	1985

Taxonmaps

69479

Global distribution of 16S sequence X83408 (>99% sequence identity) for Pseudarthrobacter from Microbeatlas

Aquatic Samples	109
Soil Samples	822
Animal Samples	156
Plant Samples	439
Total Samples	1526

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
18622		1	Hazard group According to TRBA 466
8544	yes, in single cases	1	Risk group (German classification) According to TRBA 466
121482		1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4242882v1 assembly for Pseudarthrobacter oxydans JCM 2521	scaffold	GCA_042428825	1671	66.18

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
8544	A.oxydans 16S rRNA gene	X83408	1486	1671
124043	Pseudarthrobacter oxydans strain DSM 20119 16S ribosomal RNA gene, partial sequence.	OQ876663	1370	1671
124043	Pseudarthrobacter oxydans 16S ribosomal RNA gene, partial sequence.	KY471045	599	1671
124043	Pseudarthrobacter oxydans strain JCM 2521 16S ribosomal RNA gene, partial sequence.	MT760381	1342	1671

GC content

@ref	GC-content (mol%)	Method
8544	62.7
67770	65.9	Buoyant density centrifugation (BD)
67770	62.7	thermal denaturation, midpoint method (Tm)
67770	63.1	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM4242882v1 assembly for Pseudarthrobacter oxydans JCM 2521
NCBI: GCA_042428825

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.06	no
125439	gram_stain	BacteriaNetⓘ	negative	62.21	no
125439	motility	BacteriaNetⓘ	yes	57.93	no
125439	spore_formation	BacteriaNetⓘ	no	97.31	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Draft genome sequence of a halotolerant plant growth-promoting bacterium Pseudarthrobacter oxydans NCCP-2145 isolated from rhizospheric soil of mangrove plant Avicennia marina	Bushra R, Uzair B, Ali A, Manzoor S, Abbas S, Ahmed I.	Electron J Biotechnol		2024
	Cadaver preservative properties of a solution composed of honey, ethyl alcohol, liquid paraffin, distilled water and citric acid: Experiments on rabbit cadavers.	Demiraslan Y, Gurbuz I, Ozbek M, Sahan Yapicier O, Karaca H, Karaca H, Ozgel O, Oner H.	Anat Histol Embryol	10.1111/ahe.13032	2024
	MALDI-TOF Mass Spectrometry Characterization of Culturable Microbiota Associated with the Skin of Amphibians from the Southern Andes Mountains of Ecuador.	Salazar J, Gonzalez J, Riofrio R, Siavichay F, Carrera M, Mogrovejo A, Barrera-Galicia G, Valdez-Tenezaca A.	Microb Ecol	10.1007/s00248-025-02555-8	2025
	Pea-cucumber crop rotation suppresses Fusarium pathogens by reshaping soil microbial communities and enhancing nutrient availability.	Xu J, Yao Y, Pan L, Zhang N, Li D, Chen X.	Front Microbiol	10.3389/fmicb.2025.1697343	2025
	Native Heavy Metal-Tolerant Plant Growth Promoting Rhizobacteria Improves Sulla spinosissima (L.) Growth in Post-Mining Contaminated Soils.	Oubohssaine M, Sbabou L, Aurag J.	Microorganisms	10.3390/microorganisms10050838	2022
	Pepper root exudate alleviates cucumber root-knot nematode infection by recruiting a rhizobacterium.	Tian T, Gheysen G, Kyndt T, Mo C, Xiao X, Lv Y, Long H, Wang G, Xiao Y.	Plant Commun	10.1016/j.xplc.2024.101139	2025
	Phytoremediation: Sustainable Solutions for Heavy Metal Pollution and Bioenergy in Bangladesh	Ahmed M, Afroze C, Jahan R.	ScientificWorldJournal		2025
	Effect of intra- and inter-specific plant interactions on the rhizosphere microbiome of a single target plant at different densities.	Newberger DR, Deel HL, Manter DK, Vivanco JM.	PLoS One	10.1371/journal.pone.0316676	2025
Genetics	Integrating metagenomics and culturomics to uncover the soil bacterial community in Asparagus cochinchinensis cultivation.	Yu J, Yang S, Zhang X, Liu X, Tang X, Wang L, Chen J, Luo H, Liu C, Song C.	Front Microbiol	10.3389/fmicb.2024.1467864	2024
	Synergic interactions between Trichoderma and the soil microbiomes improve plant iron availability and growth.	Shao Y, Gu S, Peng H, Zhang L, Li S, Berendsen RL, Yang T, Dong C, Wei Z, Xu Y, Shen Q.	NPJ Biofilms Microbiomes	10.1038/s41522-025-00684-z	2025
Genetics	Genome Mining of Pseudarthrobacter sp. So.54, a Rhizospheric Bacteria from Colobanthus quitensis Antarctic Plant.	Gonzalez D, Bruna P, Contreras MJ, Leal K, Urrutia CV, Nunez-Montero K, Barrientos L.	Biomolecules	10.3390/biom15040534	2025
Genetics	Unveiling the hidden allies of industrial chicory-a metagenomic exploration of rhizosphere microbiota and their impact on productivity and plant health.	Leclercq L, Debarre S, Lloret E, Taminiau B, Daube G, Rambaud C, Drider D, Siah A, Desprez B, Hilbert JL, Lucau-Danila A.	Front Microbiol	10.3389/fmicb.2025.1509094	2025
	Improving Grapevine Heat Stress Resilience with Marine Plant Growth-Promoting Rhizobacteria Consortia.	Carreiras J, Cruz-Silva A, Fonseca B, Carvalho RC, Cunha JP, Proenca Pereira J, Paiva-Silva C, A Santos S, Janeiro Sequeira R, Mateos-Naranjo E, Rodriguez-Llorente ID, Pajuelo E, Redondo-Gomez S, Matos AR, Mesa-Marin J, Figueiredo A, Duarte B.	Microorganisms	10.3390/microorganisms11040856	2023
	Cultivable microbial diversity in speleothems using MALDI-TOF spectrometry and DNA sequencing from Krem Soitan, Krem Lawbah, Krem Mawpun, Khasi Hills, Meghalaya, India.	Mudgil D, Paul D, Baskar S, Baskar R, Shouche YS.	Arch Microbiol	10.1007/s00203-022-02916-8	2022
	Impact of Plant Growth Promoting Bacteria on Salicornia ramosissima Ecophysiology and Heavy Metal Phytoremediation Capacity in Estuarine Soils.	Mesa-Marin J, Perez-Romero JA, Redondo-Gomez S, Pajuelo E, Rodriguez-Llorente ID, Mateos-Naranjo E.	Front Microbiol	10.3389/fmicb.2020.553018	2020
	Airborne bacteria in show caves from Southern Spain.	Dominguez-Monino I, Jurado V, Rogerio-Candelera MA, Hermosin B, Saiz-Jimenez C.	Microb Cell	10.15698/mic2021.10.762	2021
	Characterization of plant growth promoting activities of indigenous bacteria of phosphate mine wastes, a first step toward revegetation.	Mghazli N, Bruneel O, Zouagui R, Hakkou R, Sbabou L.	Front Microbiol	10.3389/fmicb.2022.1026991	2022
	Display of a novel carboxylesterase CarCby on Escherichia coli cell surface for carbaryl pesticide bioremediation.	Liu Y, Wang X, Nong S, Bai Z, Han N, Wu Q, Huang Z, Ding J.	Microb Cell Fact	10.1186/s12934-022-01821-5	2022
	Serum trimethylamine-N-oxide and gut microbiome alterations are associated with cholesterol deposition in the liver of laying hens fed with rapeseed meal.	Zhu L, Wang J, Ding X, Bai S, Zeng Q, Xuan Y, Fraley GS, Zhang K.	Anim Nutr	10.1016/j.aninu.2021.02.008	2021
Genetics	Marine Sponge and Octocoral-Associated Bacteria Show Versatile Secondary Metabolite Biosynthesis Potential and Antimicrobial Activities against Human Pathogens.	Almeida JF, Marques M, Oliveira V, Egas C, Mil-Homens D, Viana R, Cleary DFR, Huang YM, Fialho AM, Teixeira MC, Gomes NCM, Costa R, Keller-Costa T.	Mar Drugs	10.3390/md21010034	2022
Metabolism	Genetic analysis of phenylacetic acid catabolism in Arthrobacter oxydans CECT386.	Navarro-Llorens JM, Drzyzga O, Perera J	Arch Microbiol	10.1007/s00203-008-0370-x	2008
Phylogeny	Pseudarthrobacter psychrotolerans sp. nov., a cold-adapted bacterium isolated from Antarctic soil.	Shin Y, Lee BH, Lee KE, Park W	Int J Syst Evol Microbiol	10.1099/ijsem.0.004505	2020
Phylogeny	Arthrobacter ginsengisoli sp. nov., isolated from soil of a ginseng field.	Siddiqi MZ, Kim YJ, Hoang VA, Siddiqi MH, Huq MA, Yang DC	Arch Microbiol	10.1007/s00203-014-1025-8	2014
Phylogeny	Arthrobacter defluvii sp. nov., 4-chlorophenol-degrading bacteria isolated from sewage.	Kim KK, Lee KC, Oh HM, Kim MJ, Eom MK, Lee JS	Int J Syst Evol Microbiol	10.1099/ijs.0.65550-0	2008
Phylogeny	Arthrobacter roseus sp. nov., a psychrophilic bacterium isolated from an antarctic cyanobacterial mat sample.	Reddy GSN, Prakash JSS, Matsumoto GI, Stackebrandt E, Shivaji S	Int J Syst Evol Microbiol	10.1099/00207713-52-3-1017	2002

References

#8544	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20119
#18622	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20216	Curators of the JMRC: Jena Microbial Resource Collection (JMRC):
#33034	; Curators of the CIP;
#46682	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 17757
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#68371	Automatically annotated from API 50CH acid .
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#121482	Collection of Institut Pasteur ; Curators of the CIP; CIP 107005
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudarthrobacter oxydans (DSM 20119, ATCC 14358, NCIB 9333)

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