Arthrobacter crystallopoietes DSM 20117 is an obligate aerobe, mesophilic, Gram-positive prokaryote that was isolated from soil.
Gram-positive oval-shaped obligate aerobe mesophilic genome sequence 16S sequence| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Micrococcales |
| Family Micrococcaceae |
| Genus Arthrobacter |
| Species Arthrobacter crystallopoietes |
| Full scientific name Arthrobacter crystallopoietes Ensign and Rittenberg 1963 (Approved Lists 1980) |
| Synonyms (2) |
| BacDive ID | Other strains from Arthrobacter crystallopoietes (1) | Type strain |
|---|---|---|
| 102934 | A. crystallopoietes STI10455(IMET), |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 18421 | ISP 2 | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |||
| 18421 | ISP 3 | Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms: | |||
| 18421 | ISP 6 | Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes | |||
| 37390 | MEDIUM 3 - Columbia agar | Columbia agar (39.000 g);distilled water (1000.000 ml) | |||
| 8542 | CORYNEBACTERIUM AGAR (DSMZ Medium 53) | Medium recipe at MediaDive | Name: CORYNEBACTERIUM AGAR (DSMZ Medium 53) Composition: Agar 15.0 g/l Casein peptone 10.0 g/l NaCl 5.0 g/l Glucose 5.0 g/l Yeast extract 5.0 g/l Distilled water | ||
| 118805 | CIP Medium 72 | Medium recipe at CIP | |||
| 118805 | CIP Medium 3 | Medium recipe at CIP |
| 118805 | Oxygen toleranceobligate aerobe |
| @ref | Salt | Growth | Tested relation | Concentration | |
|---|---|---|---|---|---|
| 18421 | NaCl | positive | maximum | 5 % |
| @ref | Murein short key | Type | |
|---|---|---|---|
| 8542 | A11.04 | A3alpha L-Lys-L-Ala |
| 67770 | Observationquinones: MK-9(H2) |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 18421 | 22599 ChEBI | arabinose | - | ||
| 68368 | 29016 ChEBI | arginine | - | hydrolysis | from API 20E |
| 18421 | 62968 ChEBI | cellulose | - | ||
| 68368 | 16947 ChEBI | citrate | + | assimilation | from API 20E |
| 68379 | 17634 ChEBI | D-glucose | - | fermentation | from API Coryne |
| 68379 | 16899 ChEBI | D-mannitol | + | fermentation | from API Coryne |
| 68379 | 16988 ChEBI | D-ribose | - | fermentation | from API Coryne |
| 68379 | 65327 ChEBI | D-xylose | - | fermentation | from API Coryne |
| 68379 | 4853 ChEBI | esculin | - | hydrolysis | from API Coryne |
| 18421 | 28757 ChEBI | fructose | + | ||
| 68379 | 5291 ChEBI | gelatin | + | hydrolysis | from API Coryne |
| 68368 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20E |
| 18421 | 17234 ChEBI | glucose | + | ||
| 68379 | 28087 ChEBI | glycogen | - | fermentation | from API Coryne |
| 68379 | 17716 ChEBI | lactose | - | fermentation | from API Coryne |
| 68368 | 25094 ChEBI | lysine | - | degradation | from API 20E |
| 68379 | 17306 ChEBI | maltose | - | fermentation | from API Coryne |
| 18421 | 29864 ChEBI | mannitol | - | ||
| 18421 | 17268 ChEBI | myo-inositol | - | ||
| 68379 | 17632 ChEBI | nitrate | + | reduction | from API Coryne |
| 118805 | 17632 ChEBI | nitrate | + | reduction | |
| 118805 | 16301 ChEBI | nitrite | - | reduction | |
| 68368 | 18257 ChEBI | ornithine | - | degradation | from API 20E |
| 18421 | 16634 ChEBI | raffinose | - | ||
| 18421 | 26546 ChEBI | rhamnose | + | ||
| 18421 | 17992 ChEBI | sucrose | + | ||
| 68379 | 17992 ChEBI | sucrose | + | fermentation | from API Coryne |
| 68368 | 27897 ChEBI | tryptophan | - | energy source | from API 20E |
| 68379 | 16199 ChEBI | urea | - | hydrolysis | from API Coryne |
| 68368 | 16199 ChEBI | urea | - | hydrolysis | from API 20E |
| 18421 | 18222 ChEBI | xylose | + |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68379 | alkaline phosphatase | - | 3.1.3.1 | from API Coryne |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68379 | alpha-glucosidase | - | 3.2.1.20 | from API Coryne |
| 68368 | arginine dihydrolase | - | 3.5.3.6 | from API 20E |
| 68379 | beta-galactosidase | + | 3.2.1.23 | from API Coryne |
| 68368 | beta-galactosidase | - | 3.2.1.23 | from API 20E |
| 68379 | beta-glucosidase | - | 3.2.1.21 | from API Coryne |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 68379 | beta-glucuronidase | + | 3.2.1.31 | from API Coryne |
| 118805 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68379 | gelatinase | + | from API Coryne | |
| 68368 | gelatinase | - | from API 20E | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 68368 | lysine decarboxylase | - | 4.1.1.18 | from API 20E |
| 68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API Coryne |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 68368 | ornithine decarboxylase | - | 4.1.1.17 | from API 20E |
| 118805 | oxidase | - | ||
| 68379 | pyrazinamidase | + | 3.5.1.B15 | from API Coryne |
| 68379 | pyrrolidonyl arylamidase | - | 3.4.19.3 | from API Coryne |
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 118805 | urease | + | 3.5.1.5 | |
| 68379 | urease | - | 3.5.1.5 | from API Coryne |
| 68368 | urease | - | 3.5.1.5 | from API 20E |
| @ref | pathway | enzyme coverage | annotated reactions | external links | |
|---|---|---|---|---|---|
| 66794 | lipoate biosynthesis | 100 | 5 of 5 | ||
| 66794 | allantoin degradation | 100 | 9 of 9 | ||
| 66794 | cis-vaccenate biosynthesis | 100 | 2 of 2 | ||
| 66794 | glycogen metabolism | 100 | 5 of 5 | ||
| 66794 | valine metabolism | 100 | 9 of 9 | ||
| 66794 | cardiolipin biosynthesis | 100 | 7 of 7 | ||
| 66794 | ethanol fermentation | 100 | 2 of 2 | ||
| 66794 | 4-hydroxymandelate degradation | 100 | 9 of 9 | ||
| 66794 | acetate fermentation | 100 | 4 of 4 | ||
| 66794 | palmitate biosynthesis | 100 | 22 of 22 | ||
| 66794 | phenylalanine metabolism | 100 | 13 of 13 | ||
| 66794 | ppGpp biosynthesis | 100 | 4 of 4 | ||
| 66794 | methylglyoxal degradation | 100 | 5 of 5 | ||
| 66794 | resorcinol degradation | 100 | 2 of 2 | ||
| 66794 | biotin biosynthesis | 100 | 4 of 4 | ||
| 66794 | starch degradation | 100 | 10 of 10 | ||
| 66794 | enterobactin biosynthesis | 100 | 3 of 3 | ||
| 66794 | CO2 fixation in Crenarchaeota | 100 | 9 of 9 | ||
| 66794 | adipate degradation | 100 | 2 of 2 | ||
| 66794 | vitamin K metabolism | 100 | 5 of 5 | ||
| 66794 | teichoic acid biosynthesis | 100 | 1 of 1 | ||
| 66794 | reductive acetyl coenzyme A pathway | 100 | 7 of 7 | ||
| 66794 | glycolate and glyoxylate degradation | 100 | 6 of 6 | ||
| 66794 | phenylacetate degradation (aerobic) | 100 | 5 of 5 | ||
| 66794 | denitrification | 100 | 2 of 2 | ||
| 66794 | CDP-diacylglycerol biosynthesis | 100 | 2 of 2 | ||
| 66794 | UDP-GlcNAc biosynthesis | 100 | 3 of 3 | ||
| 66794 | folate polyglutamylation | 100 | 1 of 1 | ||
| 66794 | suberin monomers biosynthesis | 100 | 2 of 2 | ||
| 66794 | aerobactin biosynthesis | 100 | 1 of 1 | ||
| 66794 | anapleurotic synthesis of oxalacetate | 100 | 1 of 1 | ||
| 66794 | formaldehyde oxidation | 100 | 3 of 3 | ||
| 66794 | coenzyme A metabolism | 100 | 4 of 4 | ||
| 66794 | pentose phosphate pathway | 90.91 | 10 of 11 | ||
| 66794 | threonine metabolism | 90 | 9 of 10 | ||
| 66794 | 4-hydroxyphenylacetate degradation | 90 | 9 of 10 | ||
| 66794 | chorismate metabolism | 88.89 | 8 of 9 | ||
| 66794 | serine metabolism | 88.89 | 8 of 9 | ||
| 66794 | molybdenum cofactor biosynthesis | 88.89 | 8 of 9 | ||
| 66794 | gluconeogenesis | 87.5 | 7 of 8 | ||
| 66794 | histidine metabolism | 86.21 | 25 of 29 | ||
| 66794 | photosynthesis | 85.71 | 12 of 14 | ||
| 66794 | glutamate and glutamine metabolism | 85.71 | 24 of 28 | ||
| 66794 | citric acid cycle | 85.71 | 12 of 14 | ||
| 66794 | phenol degradation | 85 | 17 of 20 | ||
| 66794 | leucine metabolism | 84.62 | 11 of 13 | ||
| 66794 | purine metabolism | 84.04 | 79 of 94 | ||
| 66794 | proline metabolism | 81.82 | 9 of 11 | ||
| 66794 | metabolism of disaccharids | 81.82 | 9 of 11 | ||
| 66794 | 3-chlorocatechol degradation | 80 | 4 of 5 | ||
| 66794 | myo-inositol biosynthesis | 80 | 8 of 10 | ||
| 66794 | flavin biosynthesis | 80 | 12 of 15 | ||
| 66794 | creatinine degradation | 80 | 4 of 5 | ||
| 66794 | cellulose degradation | 80 | 4 of 5 | ||
| 66794 | ethylmalonyl-CoA pathway | 80 | 4 of 5 | ||
| 66794 | Entner Doudoroff pathway | 80 | 8 of 10 | ||
| 66794 | peptidoglycan biosynthesis | 80 | 12 of 15 | ||
| 66794 | degradation of sugar acids | 80 | 20 of 25 | ||
| 66794 | gallate degradation | 80 | 4 of 5 | ||
| 66794 | heme metabolism | 78.57 | 11 of 14 | ||
| 66794 | d-mannose degradation | 77.78 | 7 of 9 | ||
| 66794 | aspartate and asparagine metabolism | 77.78 | 7 of 9 | ||
| 66794 | NAD metabolism | 77.78 | 14 of 18 | ||
| 66794 | pyrimidine metabolism | 77.78 | 35 of 45 | ||
| 66794 | urea cycle | 76.92 | 10 of 13 | ||
| 66794 | tryptophan metabolism | 76.32 | 29 of 38 | ||
| 66794 | non-pathway related | 76.32 | 29 of 38 | ||
| 66794 | alanine metabolism | 75.86 | 22 of 29 | ||
| 66794 | glycogen biosynthesis | 75 | 3 of 4 | ||
| 66794 | cyclohexanol degradation | 75 | 3 of 4 | ||
| 66794 | isoleucine metabolism | 75 | 6 of 8 | ||
| 66794 | sulfopterin metabolism | 75 | 3 of 4 | ||
| 66794 | C4 and CAM-carbon fixation | 75 | 6 of 8 | ||
| 66794 | 6-hydroxymethyl-dihydropterin diphosphate biosynthesis | 75 | 6 of 8 | ||
| 66794 | butanoate fermentation | 75 | 3 of 4 | ||
| 66794 | arginine metabolism | 75 | 18 of 24 | ||
| 66794 | degradation of aromatic, nitrogen containing compounds | 75 | 9 of 12 | ||
| 66794 | ketogluconate metabolism | 75 | 6 of 8 | ||
| 66794 | vitamin B6 metabolism | 72.73 | 8 of 11 | ||
| 66794 | propanol degradation | 71.43 | 5 of 7 | ||
| 66794 | tetrahydrofolate metabolism | 71.43 | 10 of 14 | ||
| 66794 | glycolysis | 70.59 | 12 of 17 | ||
| 66794 | propionate fermentation | 70 | 7 of 10 | ||
| 66794 | vitamin B1 metabolism | 69.23 | 9 of 13 | ||
| 66794 | degradation of sugar alcohols | 68.75 | 11 of 16 | ||
| 66794 | octane oxidation | 66.67 | 2 of 3 | ||
| 66794 | L-lactaldehyde degradation | 66.67 | 2 of 3 | ||
| 66794 | acetoin degradation | 66.67 | 2 of 3 | ||
| 66794 | IAA biosynthesis | 66.67 | 2 of 3 | ||
| 66794 | cyanate degradation | 66.67 | 2 of 3 | ||
| 66794 | acetyl CoA biosynthesis | 66.67 | 2 of 3 | ||
| 66794 | 3-phenylpropionate degradation | 66.67 | 10 of 15 | ||
| 66794 | methionine metabolism | 65.38 | 17 of 26 | ||
| 66794 | d-xylose degradation | 63.64 | 7 of 11 | ||
| 66794 | lysine metabolism | 61.9 | 26 of 42 | ||
| 66794 | oxidative phosphorylation | 61.54 | 56 of 91 | ||
| 66794 | isoprenoid biosynthesis | 61.54 | 16 of 26 | ||
| 66794 | lipid metabolism | 61.29 | 19 of 31 | ||
| 66794 | cysteine metabolism | 61.11 | 11 of 18 | ||
| 66794 | degradation of pentoses | 60.71 | 17 of 28 | ||
| 66794 | metabolism of amino sugars and derivatives | 60 | 3 of 5 | ||
| 66794 | factor 420 biosynthesis | 60 | 3 of 5 | ||
| 66794 | ubiquinone biosynthesis | 57.14 | 4 of 7 | ||
| 66794 | glutathione metabolism | 57.14 | 8 of 14 | ||
| 66794 | tyrosine metabolism | 57.14 | 8 of 14 | ||
| 66794 | phosphatidylethanolamine bioynthesis | 53.85 | 7 of 13 | ||
| 66794 | lactate fermentation | 50 | 2 of 4 | ||
| 66794 | mannosylglycerate biosynthesis | 50 | 1 of 2 | ||
| 66794 | ribulose monophosphate pathway | 50 | 1 of 2 | ||
| 66794 | quinate degradation | 50 | 1 of 2 | ||
| 66794 | phenylmercury acetate degradation | 50 | 1 of 2 | ||
| 66794 | toluene degradation | 50 | 2 of 4 | ||
| 66794 | pantothenate biosynthesis | 50 | 3 of 6 | ||
| 66794 | dTDPLrhamnose biosynthesis | 50 | 4 of 8 | ||
| 66794 | CMP-KDO biosynthesis | 50 | 2 of 4 | ||
| 66794 | degradation of hexoses | 50 | 9 of 18 | ||
| 66794 | androgen and estrogen metabolism | 50 | 8 of 16 | ||
| 66794 | glycine metabolism | 50 | 5 of 10 | ||
| 66794 | kanosamine biosynthesis II | 50 | 1 of 2 | ||
| 66794 | sulfate reduction | 46.15 | 6 of 13 | ||
| 66794 | nitrate assimilation | 44.44 | 4 of 9 | ||
| 66794 | coenzyme M biosynthesis | 40 | 4 of 10 | ||
| 66794 | arachidonate biosynthesis | 40 | 2 of 5 | ||
| 66794 | glycine betaine biosynthesis | 40 | 2 of 5 | ||
| 66794 | polyamine pathway | 39.13 | 9 of 23 | ||
| 66794 | phenylpropanoid biosynthesis | 38.46 | 5 of 13 | ||
| 66794 | carnitine metabolism | 37.5 | 3 of 8 | ||
| 66794 | ascorbate metabolism | 36.36 | 8 of 22 | ||
| 66794 | bile acid biosynthesis, neutral pathway | 35.29 | 6 of 17 | ||
| 66794 | sphingosine metabolism | 33.33 | 2 of 6 | ||
| 66794 | methane metabolism | 33.33 | 1 of 3 | ||
| 66794 | chlorophyll metabolism | 33.33 | 6 of 18 | ||
| 66794 | selenocysteine biosynthesis | 33.33 | 2 of 6 | ||
| 66794 | lipid A biosynthesis | 33.33 | 3 of 9 | ||
| 66794 | sulfoquinovose degradation | 33.33 | 1 of 3 | ||
| 66794 | (5R)-carbapenem carboxylate biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | aclacinomycin biosynthesis | 28.57 | 2 of 7 | ||
| 66794 | benzoyl-CoA degradation | 28.57 | 2 of 7 | ||
| 66794 | carotenoid biosynthesis | 27.27 | 6 of 22 | ||
| 66794 | catecholamine biosynthesis | 25 | 1 of 4 | ||
| 66794 | daunorubicin biosynthesis | 22.22 | 2 of 9 | ||
| 66794 | vitamin B12 metabolism | 20.59 | 7 of 34 |
Global distribution of 16S sequence X80738 (>99% sequence identity) for Arthrobacter crystallopoietes subclade from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM284971v1 assembly for Crystallibacter crystallopoietes DSM 20117 | complete | 37928 | 96.24 | ||||
| 67770 | IMG-taxon 2634166276 annotated assembly for Crystallibacter crystallopoietes DSM 20117 | contig | 37928 | 76.39 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | A.crystallopoietes 16S rDNA | X80738 | 1472 | 37928 | ||
| 124043 | Arthrobacter crystallopoietes strain DSM 20117(T) 16S ribosomal RNA gene, partial sequence. | MN687839 | 458 | 37928 | ||
| 124043 | Arthrobacter crystallopoietes strain DSM 20117 16S ribosomal RNA gene, partial sequence. | PP757984 | 1404 | 37928 | ||
| 124043 | Arthrobacter crystallopoietes strain DSM 20117(T) 16S ribosomal RNA gene, partial sequence. | MN686655 | 511 | 37928 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 88.10 | no |
| 125439 | motility | BacteriaNetⓘ | no | 51.30 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 70.10 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | aerobe | 79.00 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 89.88 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 98.40 | no |
| 125438 | aerobic | aerobicⓘ | yes | 88.88 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 61.51 | no |
| 125438 | thermophilic | thermophileⓘ | no | 97.00 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 92.00 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Comparative genomics based exploration of xenobiotic degradation patterns in Glutamicibacter, Arthrobacter, and Pseudarthrobacter isolated from diverse ecological habitats. | Ghimire N, Kim B, Han SR, Oh TJ. | Heliyon | 10.1016/j.heliyon.2024.e40280 | 2024 | ||
| Validation List no. 224. Valid publication of new names and new combinations effectively published outside the IJSEM. | Oren A, Goker M. | Int J Syst Evol Microbiol | 10.1099/ijsem.0.006801 | 2025 | ||
| Draft genomes of three nitroguanidine-degrading bacteria: Pseudomonas extremaustralis NQ5, Arthrobacter strain NQ4, and Arthrobacter strain NQ7. | Kim J, Fuller ME, Hatzinger PB, Chu KH. | Microbiol Resour Announc | 10.1128/mra.00467-23 | 2023 | ||
| Metabolism | Complete genome sequence of Arthrobacter sp. PAMC25564 and its comparative genome analysis for elucidating the role of CAZymes in cold adaptation. | Han SR, Kim B, Jang JH, Park H, Oh TJ. | BMC Genomics | 10.1186/s12864-021-07734-8 | 2021 | |
| Structural Analysis and Substrate Specificity of D-Carbamoylase from Pseudomonas. | Paronyan M, Koloyan H, Aganyants H, Hambardzumyan A, Soghomonyan T, Avetisyan S, Kocharov S, Panosyan H, Sakanyan V, Hovsepyan A. | BioTech (Basel) | 10.3390/biotech13040040 | 2024 | ||
| Genetics | Genome Functional Analysis of the Psychrotrophic Lignin-Degrading Bacterium Arthrobacter sp. C2 and the Role of DyP in Catalyzing Lignin Degradation. | Jiang C, Yan H, Shen X, Zhang Y, Wang Y, Sun S, Jiang H, Zang H, Zhao X, Hou N, Li Z, Wang L, Wang H, Li C. | Front Microbiol | 10.3389/fmicb.2022.921549 | 2022 | |
| Phylogeny | Diversity of Culturable Bacteria Isolated from Highland Barley Cultivation Soil in Qamdo, Tibet Autonomous Region. | Pan HU, Zhou J, Dawa Z, Dai Y, Zhang Y, Yang H, Wang C, Liu H, Zhou H, Lu X, Tian Y. | Pol J Microbiol | 10.33073/pjm-2021-008 | 2021 | |
| An efficient direct screening system for microorganisms that activate plant immune responses based on plant-microbe interactions using cultured plant cells. | Kurokawa M, Nakano M, Kitahata N, Kuchitsu K, Furuya T. | Sci Rep | 10.1038/s41598-021-86560-0 | 2021 | ||
| Soil mineral composition matters: response of microbial communities to phenanthrene and plant litter addition in long-term matured artificial soils. | Babin D, Vogel C, Zuhlke S, Schloter M, Pronk GJ, Heister K, Spiteller M, Kogel-Knabner I, Smalla K. | PLoS One | 10.1371/journal.pone.0106865 | 2014 | ||
| Novel amidases of two Aminobacter sp. strains: Biotransformation experiments and elucidation of gene sequences. | Engel U, Syldatk C, Rudat J. | AMB Express | 10.1186/2191-0855-2-33 | 2012 | ||
| Distribution and diversity of olefins and olefin-biosynthesis genes in Gram-positive bacteria. | Surger M, Angelov A, Liebl W. | Biotechnol Biofuels | 10.1186/s13068-020-01706-y | 2020 | ||
| Insight Into the Diversity and Possible Role of Plasmids in the Adaptation of Psychrotolerant and Metalotolerant Arthrobacter spp. to Extreme Antarctic Environments. | Romaniuk K, Golec P, Dziewit L. | Front Microbiol | 10.3389/fmicb.2018.03144 | 2018 | ||
| Cyclic Lipodepsipeptides From Pseudomonas spp. - Biological Swiss-Army Knives. | Geudens N, Martins JC. | Front Microbiol | 10.3389/fmicb.2018.01867 | 2018 | ||
| Phylogeny | Geomicrobiology of high-level nuclear waste-contaminated vadose sediments at the hanford site, washington state. | Fredrickson JK, Zachara JM, Balkwill DL, Kennedy D, Li SM, Kostandarithes HM, Daly MJ, Romine MF, Brockman FJ. | Appl Environ Microbiol | 10.1128/aem.70.7.4230-4241.2004 | 2004 | |
| Enzymology | Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients. | Heuer H, Krsek M, Baker P, Smalla K, Wellington EM. | Appl Environ Microbiol | 10.1128/aem.63.8.3233-3241.1997 | 1997 | |
| Metabolism | C29 olefinic hydrocarbons biosynthesized by Arthrobacter species. | Frias JA, Richman JE, Wackett LP. | Appl Environ Microbiol | 10.1128/aem.02547-08 | 2009 | |
| Induction of morphogenesis in the genus Arthrobacter. | Lucas DS, Clark JB. | J Bacteriol | 10.1128/jb.124.2.1034-1036.1975 | 1975 | ||
| Myceloid growth of Arthrobacter globiformis and other Arthrobacter species. | Germida JJ, Casida LE. | J Bacteriol | 10.1128/jb.144.3.1152-1158.1980 | 1980 | ||
| Survival of Arthrobacter crystallopoietes during prolonged periods of extreme desiccation. | Boylen CW. | J Bacteriol | 10.1128/jb.113.1.33-37.1973 | 1973 | ||
| Isolation and characterization of morphogenetic mutants of Arthrobacter crystallopoietes. | Achberger EC, Kolenbrander PE. | J Bacteriol | 10.1128/jb.135.2.595-602.1978 | 1978 | ||
| Ultrastructural explanation for snapping postfission movements in Arthrobacter crystallopoietes. | Krulwich TA, Pate JL. | J Bacteriol | 10.1128/jb.105.1.408-412.1971 | 1971 | ||
| Sphere-rod morphogenesis in Arthrobacter crystallopoietes. I. Cell wall composition and polysaccharides of the peptidoglycan. | Krulwich TA, Ensign JC, Tipper DJ, Strominger JL. | J Bacteriol | 10.1128/jb.94.3.734-740.1967 | 1967 | ||
| Metabolism | Metabolism of endogenous trehalose by Streptomyces griseus spores and by spores or cells of other actinomycetes. | McBride MJ, Ensign JC. | J Bacteriol | 10.1128/jb.169.11.5002-5007.1987 | 1987 | |
| Metabolism | Regulation of cyclic AMP levels in Arthrobacter crystallopoietes and a morphogenetic mutant. | Hamilton RW, Kolenbrander PE. | J Bacteriol | 10.1128/jb.134.3.1064-1073.1978 | 1978 | |
| Enzymology | Immunological properties of protocatechuate 3, 4-dioxygenase isofunctional enzymes. | Hou CT, Lillard MO. | J Bacteriol | 10.1128/jb.126.1.516-519.1976 | 1976 | |
| Gram characteristics and wall ultrastructure of Arthrobacter crystallopoietes during coccus-rod morphogenesis. | Ward CM, Claus GW. | J Bacteriol | 10.1128/jb.114.1.378-389.1973 | 1973 | ||
| Pathogenicity | Selective inhibition of bacterial enzymes by free fatty acids. | Ferdinandus J, Clark JB. | J Bacteriol | 10.1128/jb.98.3.1109-1113.1969 | 1969 | |
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| Enzymology | Toward a cell-free hydantoinase process: screening for expression optimization and one-step purification as well as immobilization of hydantoinase and carbamoylase. | Slomka C, Spath GP, Lemke P, Skoupi M, Niemeyer CM, Syldatk C, Rudat J | AMB Express | 10.1186/s13568-017-0420-3 | 2017 | |
| Chemical synthesis and enzymatic, stereoselective hydrolysis of a functionalized dihydropyrimidine for the synthesis of beta-amino acids. | Slomka C, Zhong S, Fellinger A, Engel U, Syldatk C, Brase S, Rudat J | AMB Express | 10.1186/s13568-015-0174-8 | 2015 | ||
| Genetics | Corynebacterium senegalense sp. nov. and Arthrobacter senegalensis sp. nov., two new Actinobacteria isolated from skin swab from the palm of hand. | Ndiaye C, Fall NS, Kuete E, Lo CI, Raoult D, Sokhna C, Lagier JC. | New Microbes New Infect | 10.1016/j.nmni.2019.100583 | 2019 | |
| Enzymology | Isolation of Arthrobacter spp. from clinical specimens and description of Arthrobacter cumminsii sp. nov. and Arthrobacter woluwensis sp. nov. | Funke G, Hutson RA, Bernard KA, Pfyffer GE, Wauters G, Collins MD. | J Clin Microbiol | 10.1128/jcm.34.10.2356-2363.1996 | 1996 | |
| Phylogeny | Proposal of Crystallibacter gen. nov., Crystallibacter permensis sp. nov. and Crystallibacter degradans sp. nov. for the salt-tolerant and aromatics degrading actinobacteria, and reclassification of Arthrobacter crystallopoietes as Crystallibacter crystallifaciens comb. nov. | Plotnikova EG, Ariskina EV, Yastrebova OV, Potekhina NV, Avtukh AN, Tarlachkov SV, Starodumova IP, Dorofeeva LV, Evtushenko LI. | Antonie Van Leeuwenhoek | 10.1007/s10482-024-02048-7 | 2024 | |
| Arthrobacter mangrovi sp. nov., an actinobacterium isolated from the rhizosphere of a mangrove. | Hamada M, Saitou S, Enomoto N, Nanri K, Hidaka K, Miura T, Tamura T. | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005749 | 2023 | ||
| Genetics | Discovery of Phloeophagus Beetles as a Source of Pseudomonas Strains That Produce Potentially New Bioactive Substances and Description of Pseudomonas bohemica sp. nov. | Saati-Santamaria Z, Lopez-Mondejar R, Jimenez-Gomez A, Diez-Mendez A, Vetrovsky T, Igual JM, Velazquez E, Kolarik M, Rivas R, Garcia-Fraile P. | Front Microbiol | 10.3389/fmicb.2018.00913 | 2018 | |
| Phylogeny | Description of Tersicoccus phoenicis gen. nov., sp. nov. isolated from spacecraft assembly clean room environments. | Vaishampayan P, Moissl-Eichinger C, Pukall R, Schumann P, Sproer C, Augustus A, Roberts AH, Namba G, Cisneros J, Salmassi T, Venkateswaran K | Int J Syst Evol Microbiol | 10.1099/ijs.0.047134-0 | 2012 |
| #8542 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20117 |
| #18421 | Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig . |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #37390 | ; Curators of the CIP; |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 ) |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68368 | Automatically annotated from API 20E . |
| #68379 | Automatically annotated from API Coryne . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #118805 | Collection of Institut Pasteur ; Curators of the CIP; CIP 102717 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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BacDive in 2025: the core database for prokaryotic strain data