Name: Paenarthrobacter aurescens 579
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7519

Type strain:

Species: Paenarthrobacter aurescens

Strain Designation: 579

Culture col. no.: DSM 20116, ATCC 13344, CCM 1649, NCIB 8912, JCM 1330, BCRC 12110, CCUG 23839, CCUG 23885, CDA 579, CGMCC 1.1892, CIP 102364, HAMBI 1850, IAM 12340, IFO 12136, IMSNU 21002, KCCM 41109, KCTC 3378, LMG 3815, NBIMCC 2010, NBRC 12136, NCCB 72018, NCIMB 8912, NRIC 0150, NRRL B-2879, VKM Ac-1105

Strain history: CIP <- 1986, DSM <- ATCC <- A.G. Lochhead: strain 579 <- H.J. Conn

NCBI tax ID(s): 43663 (species)

SI-ID 107676

LMG 3815, ATCC 13344, CCM 1649, DSM 20116, IAM 12340, IFO 12136, JCM 1330, NCIB 8912, CCUG 23839, NCIB 891, CCUG 23885, CIP 102364, CCRC 12110, NCIMB 8912, VKM Ac-1105, VKM Ac-1124, KCTC 3378, NBRC 12136, NRRL B-2879, HAMBI 1850, BCRC 12110, NBIMCC 2010, NCCB 72018, CGMCC 1.1892, LMD 72.18, IMET 11247

Other strains from Paenarthrobacter aurescens

P. aurescens STI09547(IMET), KCCA-0113, FYUMt-2, ...

Section

Paenarthrobacter aurescens 579 is a mesophilic bacterium of the family Micrococcaceae.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Micrococcaceae*
	Genus	*Paenarthrobacter*
	Species	**Paenarthrobacter aurescens**
	Full Scientific Name (LPSN)	Paenarthrobacter aurescens (Phillips 1953) Busse 2016

Synonym

Arthrobacter aurescens

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %94.032

[Ref.: #18420]	Colony color	Beige (1001)
[Ref.: #18420]	Incubation period	10-14 days
[Ref.: #18420]	Cultivation medium used	ISP 2

[Ref.: #18420]	Colony color	Lemon yellow (1012)
[Ref.: #18420]	Incubation period	10-14 days
[Ref.: #18420]	Cultivation medium used	ISP 3

[Ref.: #18420]	Colony color	Pastel yellow (1034)
[Ref.: #18420]	Incubation period	10-14 days
[Ref.: #18420]	Cultivation medium used	ISP 4

[Ref.: #18420]	Colony color	Ivory (1014)
[Ref.: #18420]	Incubation period	10-14 days
[Ref.: #18420]	Cultivation medium used	ISP 5

[Ref.: #18420]	Colony color	Colorless
[Ref.: #18420]	Incubation period	10-14 days
[Ref.: #18420]	Cultivation medium used	ISP 6

[Ref.: #18420]	Colony color	Ivory (1014)
[Ref.: #18420]	Incubation period	10-14 days
[Ref.: #18420]	Cultivation medium used	ISP 7

[Ref.: #18420]	Multicellular complex forming ability	no
[Ref.: #18420]	Medium Name (multicellularity)	ISP 2

[Ref.: #18420]	Multicellular complex forming ability	no
[Ref.: #18420]	Medium Name (multicellularity)	ISP 3

[Ref.: #18420]	Multicellular complex forming ability	no
[Ref.: #18420]	Medium Name (multicellularity)	ISP 4

[Ref.: #18420]	Multicellular complex forming ability	no
[Ref.: #18420]	Medium Name (multicellularity)	ISP 5

[Ref.: #18420]	Multicellular complex forming ability	no
[Ref.: #18420]	Medium Name (multicellularity)	ISP 6

[Ref.: #18420]	Multicellular complex forming ability	no
[Ref.: #18420]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18420]

Culture medium

ISP 2

[Ref.: #18420]

Culture medium growth

[Ref.: #18420]

Culture medium composition

expand / minimize

[Ref.: #18420]

Culture medium

ISP 3

[Ref.: #18420]

Culture medium growth

[Ref.: #18420]

Culture medium composition

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[Ref.: #18420]

Culture medium

ISP 4

[Ref.: #18420]

Culture medium growth

[Ref.: #18420]

Culture medium composition

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[Ref.: #18420]

Culture medium

ISP 5

[Ref.: #18420]

Culture medium growth

[Ref.: #18420]

Culture medium composition

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[Ref.: #18420]

Culture medium

ISP 6

[Ref.: #18420]

Culture medium growth

[Ref.: #18420]

Culture medium composition

expand / minimize

[Ref.: #18420]

Culture medium

ISP 7

[Ref.: #18420]

Culture medium growth

[Ref.: #18420]

Culture medium composition

expand / minimize

[Ref.: #41901]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #41901]

Culture medium growth

[Ref.: #41901]

Culture medium composition

expand / minimize

[Ref.: #8541]

Culture medium

CORYNEBACTERIUM AGAR (DSMZ Medium 53)

[Ref.: #8541]

Culture medium growth

[Ref.: #8541]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8541]

Culture medium composition

expand / minimize

[Ref.: #116570]

Culture medium

CIP Medium 3

[Ref.: #116570]

Culture medium growth

[Ref.: #116570]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #8541]	growth	30 °C
[Ref.: #18420]	optimum	28 °C
[Ref.: #41901]	growth	30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #8541]	Temperature range	mesophilic
[Ref.: #18420]	Temperature range	mesophilic
[Ref.: #41901]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.812

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #18420]		NaCl		growth	0	%

[Ref.: #8541]	Murein short key	A11.17
[Ref.: #8541]	Murein types	A3alpha L-Lys-L-Ala-L-Thr-L-Ala

[Ref.: #67770]

Observation

quinones: MK-9(H₂)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18420]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #18420]	cellulose ChEBI	-
[Ref.: #68379]	D-glucose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #18420]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E, API Coryne
[Ref.: #18420]	glucose ChEBI	+
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	lactose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #68379]	maltose ChEBI	+	fermentation	* from API Coryne
[Ref.: #18420]	mannitol ChEBI	+
[Ref.: #18420]	myo-inositol ChEBI	+
[Ref.: #68379]	nitrate ChEBI	+	reduction	* from API Coryne
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #18420]	raffinose ChEBI	+
[Ref.: #18420]	rhamnose ChEBI	+
[Ref.: #18420]	sucrose ChEBI	+
[Ref.: #68379]	sucrose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E, API Coryne
[Ref.: #18420]	xylose ChEBI	+
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68379]	alkaline phosphatase	-	3.1.3.1	* from API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym, API Coryne
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym, API Coryne, API 20E
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne
[Ref.: #68379]	beta-glucuronidase	+	3.2.1.31	* from API Coryne
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	+		* from API Coryne, API 20E
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym, API Coryne
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68379]	urease	+	3.5.1.5	* from API Coryne, API 20E
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18420]	16	+	-	-	-	not determinedn.d.	-	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #18420]	101	+	-	+	-	+	+	+	+	-	+	+	not determinedn.d.	+	+	-	+	+	+	+	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18420]	130	not determinedn.d.	+	-	+	-	+	+	+	+	-	+	+	+	+	-	+	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence X83405 (>99% sequence identity) for Paenarthrobacter from Microbeatlas

Aquatic Samples	855
Soil Samples	3607
Animal Samples	3936
Plant Samples	2170
Total Samples	10568

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8541]	Pathogenicity (human)	yes, in single cases
[Ref.: #8541]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #18420]	Biosafety level	1
[Ref.: #116570]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8541]	Arthrobacter aurescens 16S rRNA gene, strain DSM 20116	X83405	1515	ENA	43663 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Paenarthrobacter aurescens NBRC 12136	GCA_006538985	contig	GenBank	43663 tax ID
[Ref.: #66792]	Paenarthrobacter aurescens strain NBRC 12136	43663.10	wgs	PATRIC	43663 tax ID	*

[Ref.: #8541]	GC-content	61.5 mol%
[Ref.: #67770]	GC-content	59.1 mol%	Buoyant density centrifugation (BD)
[Ref.: #67770]	GC-content	61.5 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	66.2 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	61.9 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Paenarthrobacter aurescens strain NBRC 12136 PATRIC: 43663.10
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paenarthrobacter aurescens strain NBRC 12136 PATRIC: 43663.10
[Ref.: #69480]	gram-positive	yes	93.013	no
[Ref.: #69480]	anaerobic	no	99.408	no
[Ref.: #69480]	halophile	no	92.053	yes
[Ref.: #69480]	spore-forming	no	82.56	no
[Ref.: #69480]	glucose-util	yes	87.079	yes
[Ref.: #69480]	aerobic	yes	96.375	no
[Ref.: #69480]	flagellated	no	96.844	no
[Ref.: #69480]	thermophile	no	99.149	yes
[Ref.: #69480]	motile	no	91.117	no
[Ref.: #69480]	glucose-ferment	no	83.247	no

Availability in culture collections External links

[Ref.: #8541]

Culture collection no.

DSM 20116, ATCC 13344, CCM 1649, NCIB 8912, JCM 1330, BCRC 12110, CCUG 23839, CCUG 23885, CDA 579, CGMCC 1.1892, CIP 102364, HAMBI 1850, IAM 12340, IFO 12136, IMSNU 21002, KCCM 41109, KCTC 3378, LMG 3815, NBIMCC 2010, NBRC 12136, NCCB 72018, NCIMB 8912, NRIC 0150, NRRL B-2879, VKM Ac-1105

[Ref.: #76964]

SI-ID 107676

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Arthrobacter bambusae sp. nov., isolated from soil of a bamboo grove.	Park Y, Kook M, Ngo HTT, Kim KY, Park SY, Mavlonov GT, Yi TH	Int J Syst Evol Microbiol	10.1099/ijs.0.064550-0	2014	*
Enzymology	Gene cloning, expression, and characterization of a novel trehalose synthase from Arthrobacter aurescens.	Xiuli W, Hongbiao D, Ming Y, Yu Q	Appl Microbiol Biotechnol	10.1007/s00253-009-1863-5	2009	*

References

#8541

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20116

#18420

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#41901 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#76964

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID107676.1 )

#116570 Collection of Institut Pasteur ; Curators of the CIP; CIP 102364
* These data were automatically processed and therefore are not curated

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Paenarthrobacter aurescens strain NBRC 12136

Paenarthrobacter aurescens strain NBRC 12136

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