Name: Salinibacterium amurskyense DSM 16400
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7488

Type strain:

Species: Salinibacterium amurskyense

Culture col. no.: DSM 16400, KCTC 9931, KMM 3673, JCM 12362, CIP 108377, IAM 15155, NBRC 100448

Strain history: CIP <- 2004, KCTC <- KMM

NCBI tax ID(s): 205941 (species)

SI-ID 99608

KCTC 9931, DSM 16400, NBRC 100448, JCM 12362, CIP 108377, IAM 15155

Section

Salinibacterium amurskyense DSM 16400 is an obligate aerobe, mesophilic, Gram-positive bacterium that was isolated from seawater.

Gram-positive
mesophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Salinibacterium*
	Species	**Salinibacterium amurskyense**
	Full Scientific Name (LPSN)	Salinibacterium amurskyense Han et al. 2003

Information on morphological and physiological properties Morphology

[Ref.: #116347]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #116347]	Cell shape	rod-shaped

[Ref.: #116347]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6429]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #6429]

Culture medium growth

[Ref.: #6429]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6429]

Culture medium composition

expand / minimize

[Ref.: #33234]

Culture medium

Marine agar (MA)

[Ref.: #33234]

Culture medium growth

[Ref.: #33234]

Culture medium composition

expand / minimize

[Ref.: #116347]

Culture medium

CIP Medium 13

[Ref.: #116347]

Culture medium growth

[Ref.: #116347]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #6429]		growth	25-28 °C
[Ref.: #33234]		growth	30 °C
[Ref.: #67770]		growth	28 °C
[Ref.: #116347]		growth	10-30 °C
[Ref.: #116347]	no	growth	37 °C
[Ref.: #116347]	no	growth	41 °C
[Ref.: #116347]	no	growth	45 °C

[Ref.: #6429]	Temperature range	mesophilic
[Ref.: #33234]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #116347]	Temperature range	mesophilic
[Ref.: #116347]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #116347]

Oxygen tolerance

obligate aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

	Salt	Tested relation		Salt conc.
[Ref.: #116347]	NaCl		growth	0-4	%
[Ref.: #116347]	NaCl	no	growth	6	%
[Ref.: #116347]	NaCl	no	growth	8	%
[Ref.: #116347]	NaCl	no	growth	10	%

[Ref.: #67770]

Observation

quinones: MK-11

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #116347]	citrate ChEBI	-	carbon source
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #116347]	esculin ChEBI	-	hydrolysis
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #116347]	hippurate ChEBI	-	hydrolysis
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #116347]	nitrate ChEBI	-	reduction
[Ref.: #116347]	nitrate ChEBI	-	respiration
[Ref.: #116347]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #116347]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #116347]		acetoin ChEBI	-
[Ref.: #116347]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #116347]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #116347]	amylase	-
[Ref.: #116347]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #116347]	caseinase	-	3.4.21.50
[Ref.: #116347]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #116347]	DNase	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #116347]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #116347]	gelatinase	+/-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #116347]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #116347]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #116347]	oxidase	-
[Ref.: #116347]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #116347]	tryptophan deaminase	-
[Ref.: #116347]	tween esterase	-
[Ref.: #116347]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #116347]	11279	not determinedn.d.	+/-	-	-	-	+/-	+/-	-	-	-	+/-	+/-	+/-	+/-	-	+/-	-	-	+/-	-	-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #116347]	11131	-	-	+	+	-	+	+	-	-	-	+	+	+	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6429]	Sample type/isolated from	seawater
[Ref.: #6429]	Geographic location (country and/or sea, region)	East Sea, Amursky Bay
[Ref.: #6429]	Country	Russia
[Ref.: #6429]	Country ISO 3 Code	RUS
[Ref.: #6429]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Seawater
[Ref.: #67770]	Geographic location (country and/or sea, region)	Amursky Bay of the Gulf of Peter the Great
[Ref.: #67770]	Country	Russia
[Ref.: #67770]	Country ISO 3 Code	RUS

[Ref.: #116347]	Sample type/isolated from	Environment, Sea water
[Ref.: #116347]	Geographic location (country and/or sea, region)	Amursky bay
[Ref.: #116347]	Country	Sea of Japan
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF539697 (>99% sequence identity) for Salinibacterium amurskyense subclade from Microbeatlas

Aquatic Samples	328
Soil Samples	348
Animal Samples	65
Plant Samples	96
Total Samples	837

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6429]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116347]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6429]	Marine bacterium KMM3673 16S ribosomal RNA gene, partial sequence	AF539697	1431	ENA	205941 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Salinibacterium amurskyense JCM 12362	GCA_003668745	contig	GenBank	205941 tax ID
[Ref.: #67770]	Salinibacterium amurskyense DSM 16400	GCA_002797685	contig	GenBank	205941 tax ID
[Ref.: #66792]	Salinibacterium amurskyense strain DSM 16400	205941.3	wgs	PATRIC	205941 tax ID	*
[Ref.: #66792]	Salinibacterium amurskyense strain JCM 12362	205941.4	wgs	PATRIC	205941 tax ID	*
[Ref.: #66792]	Salinibacterium amurskyense strain KCTC 9931	205941.11	wgs	PATRIC	205941 tax ID	*
[Ref.: #66792]	Salinibacterium amurskyense DSM 16400	2728369736	draft	JGI IMG/M	205941 tax ID	*

[Ref.: #6429]	GC-content	61 mol%
[Ref.: #67770]	GC-content	61 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Salinibacterium amurskyense strain KCTC 9931 PATRIC: 205941.11
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Salinibacterium amurskyense strain DSM 16400 PATRIC: 205941.3
[Ref.: #69480]	motile	no	90.889	no
[Ref.: #69480]	gram-positive	yes	92.564	no
[Ref.: #69480]	anaerobic	no	99.402	no
[Ref.: #69480]	aerobic	yes	94.545	no
[Ref.: #69480]	halophile	no	86.803	no
[Ref.: #69480]	spore-forming	no	94.751	no
[Ref.: #69480]	glucose-util	yes	84.63	no
[Ref.: #69480]	flagellated	no	97.601	no
[Ref.: #69480]	thermophile	no	99.496	yes
[Ref.: #69480]	glucose-ferment	no	87.237	no

Availability in culture collections External links

[Ref.: #6429]

Culture collection no.

DSM 16400, KCTC 9931, KMM 3673, JCM 12362, CIP 108377, IAM 15155, NBRC 100448

[Ref.: #76934]

SI-ID 99608

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Homoserinimonas aerilata gen. nov., sp. nov., a novel member of the family Microbacteriaceae isolated from an air sample in Korea.	Kim SJ, Jang YH, Hamada M, Tamura T, Ahn JH, Weon HY, Suzuki K, Kwon SW	J Microbiol	10.1007/s12275-012-2096-3	2012	*
Phylogeny	Salinibacterium xinjiangense sp. nov., a psychrophilic bacterium isolated from the China No. 1 glacier.	Zhang DC, Liu HC, Xin YH, Yu Y, Zhou PJ, Zhou YG	Int J Syst Evol Microbiol	10.1099/ijs.0.65802-0	2008	*
Phylogeny	Salinibacterium amurskyense gen. nov., sp. nov., a novel genus of the family Microbacteriaceae from the marine environment.	Han SK, Nedashkovskaya OI, Mikhailov VV, Kim SB, Bae KS	Int J Syst Evol Microbiol	10.1099/ijs.0.02627-0	2003	*

References

#6429

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16400

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#33234 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#76934

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID99608.1 )

#116347 Collection of Institut Pasteur ; Curators of the CIP; CIP 108377
* These data were automatically processed and therefore are not curated

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Salinibacterium amurskyense strain KCTC 9931

Salinibacterium amurskyense strain DSM 16400

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