Name: Rathayibacter festucae DSM 15932
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7487

Type strain:

Species: Rathayibacter festucae

Culture col. no.: DSM 15932, UCM Ac-619, VKM Ac-1390, CIP 108055, JCM 13577

Strain history: CIP <- 2003, L. Evtushenko, VKM, Moscow, Russia

NCBI tax ID(s): 1328866 (strain), 110937 (species)

SI-ID 72230

VKM Ac-1390, DSM 15932, JCM 13577, CIP 108055

Other strains from Rathayibacter festucae

R. festucae Klenk-S11g, DSM 26693

Section

Rathayibacter festucae DSM 15932 is an obligate aerobe, psychrophilic, Gram-positive bacterium that was isolated from leaf gall induced by plant-parasitic nematode Anguina graminis.

Gram-positive
obligate aerobe
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Rathayibacter*
	Species	**Rathayibacter festucae**
	Full Scientific Name (LPSN)	Rathayibacter festucae Dorofeeva et al. 2002

Information on morphological and physiological properties Morphology

[Ref.: #119338]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #119338]	Cell shape	rod-shaped

[Ref.: #119338]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6192]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #6192]

Culture medium growth

[Ref.: #6192]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6192]

Culture medium composition

expand / minimize

[Ref.: #33878]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #33878]

Culture medium growth

[Ref.: #33878]

Culture medium composition

expand / minimize

[Ref.: #119338]

Culture medium

CIP Medium 72

[Ref.: #119338]

Culture medium growth

[Ref.: #119338]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #119338]

Culture medium

CIP Medium 111

[Ref.: #119338]

Culture medium growth

[Ref.: #119338]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #6192]		growth	24 °C
[Ref.: #33878]		growth	25 °C
[Ref.: #119338]		growth	10-30 °C
[Ref.: #119338]	no	growth	37 °C
[Ref.: #119338]	no	growth	41 °C
[Ref.: #119338]	no	growth	45 °C

[Ref.: #6192]	Temperature range	psychrophilic
[Ref.: #33878]	Temperature range	mesophilic
[Ref.: #119338]	Temperature range	mesophilic
[Ref.: #119338]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #119338]

Oxygen tolerance

obligate aerobe

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.738

	Salt	Tested relation		Salt conc.
[Ref.: #119338]	NaCl		growth	0	%
[Ref.: #119338]	NaCl	no	growth	2	%
[Ref.: #119338]	NaCl	no	growth	4	%
[Ref.: #119338]	NaCl	no	growth	6	%
[Ref.: #119338]	NaCl	no	growth	8	%
[Ref.: #119338]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #119338]	citrate ChEBI	-	carbon source
[Ref.: #119338]	esculin ChEBI	+	hydrolysis
[Ref.: #119338]	hippurate ChEBI	-	hydrolysis
[Ref.: #119338]	nitrate ChEBI	-	reduction
[Ref.: #119338]	nitrate ChEBI	-	respiration
[Ref.: #119338]	nitrite ChEBI	-	reduction

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #119338]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #119338]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #119338]		acetoin ChEBI	+
[Ref.: #119338]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #119338]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #119338]	amylase	-
[Ref.: #119338]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #119338]	caseinase	-	3.4.21.50
[Ref.: #119338]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #119338]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #119338]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #119338]	gelatinase	-
[Ref.: #119338]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #119338]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #119338]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #119338]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #119338]	oxidase	-
[Ref.: #119338]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #119338]	protease	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #119338]	tryptophan deaminase	-
[Ref.: #119338]	tween esterase	-
[Ref.: #119338]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #119338]	2563	not determinedn.d.	+	+	-	+	+	-	+	+	+	+	+	-	-	-	-	+	+	+	+	+	+	+	+	+	-	+	-	-	-	-	-	+	+	+	+	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119338]	10852	-	-	+	+	-	+	+	-	-	-	+	-	+	+	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6192]	Sample type/isolated from	leaf gall induced by plant-parasitic nematode Anguina graminis
[Ref.: #6192]	Host species	Anguina graminis
[Ref.: #6192]	Geographic location (country and/or sea, region)	Moscow
[Ref.: #6192]	Country	Russia
[Ref.: #6192]	Country ISO 3 Code	RUS
[Ref.: #6192]	Continent	Europe

[Ref.: #119338]	Sample type/isolated from	Animal, Leaf gall induced by the nematode Anguina graminis on Festuca rubra L.
[Ref.: #119338]	Geographic location (country and/or sea, region)	Moscow region
[Ref.: #119338]	Country	Russian Federation
[Ref.: #119338]	Country ISO 3 Code	RUS
[Ref.: #119338]	Continent	Europe
[Ref.: #119338]	Isolation date	1991
* marker position based on {}

Isolation sources categories

#Host	#Invertebrates (Other)	#Nematoda
#Host	#Plants	-
#Infection	#Plant infections	#Gall
#Host Body-Site	#Plant	#Leaf (Phyllosphere)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM410683 (>99% sequence identity) for Rathayibacter from Microbeatlas

Aquatic Samples	712
Soil Samples	2646
Animal Samples	2197
Plant Samples	2536
Total Samples	8091

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6192]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119338]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6192]	Rathayibacter festuci 16S ribosomal RNA gene, partial sequence	AF159365	1271	ENA	110937 tax ID
[Ref.: #20218]	Rathayibacter festucae partial 16S rRNA gene, type strain DSM 15932	AM410683	1487	ENA	110937 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rathayibacter festucae DSM 15932	GCA_004011135	complete	GenBank	1328866 tax ID	*

[Ref.: #6192]

GC-content

68 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Rathayibacter festucae DSM 15932 DSM 15932 NCBI: GCA_004011135.1
[Ref.: #69481]	spore-forming	no	54	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rathayibacter festucae DSM 15932 DSM 15932 NCBI: GCA_004011135.1
[Ref.: #69480]	motile	no	90.675	no
[Ref.: #69480]	flagellated	no	97.864	no
[Ref.: #69480]	gram-positive	yes	92.735	no
[Ref.: #69480]	anaerobic	no	99.558	no
[Ref.: #69480]	aerobic	yes	93.71	no
[Ref.: #69480]	halophile	no	85.516	no
[Ref.: #69480]	spore-forming	no	91.957	no
[Ref.: #69480]	thermophile	no	99.517	yes
[Ref.: #69480]	glucose-util	yes	86.79	no
[Ref.: #69480]	glucose-ferment	no	91.535	no

Availability in culture collections External links

[Ref.: #6192]

Culture collection no.

DSM 15932, UCM Ac-619, VKM Ac-1390, CIP 108055, JCM 13577

[Ref.: #76933]

SI-ID 72230

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rathayibacter caricis sp. nov. and Rathayibacter festucae sp. nov., isolated from the phyllosphere of Carex sp. and the leaf gall induced by the nematode Anguina graminis on Festuca rubra L., respectively.	Dorofeeva LV, Evtushenko LI, Krausova VI, Karpov AV, Subbotin SA, Tiedje JM	Int J Syst Evol Microbiol	10.1099/00207713-52-6-1917	2002	*

References

#6192

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15932

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#33878 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#76933

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID72230.1 )

#119338 Collection of Institut Pasteur ; Curators of the CIP; CIP 108055
* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Rathayibacter festucae in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Rathayibacter festucae DSM 15932 DSM 15932

Rathayibacter festucae DSM 15932 DSM 15932

Change proposal

Change proposal