Pseudoclavibacter helvolus (DSM 20419, ATCC 13715, CIP 108565)

Name: Pseudoclavibacter helvolus (DSM 20419, ATCC 13715, CIP 108565)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7475

Type strain

Culture col. no. DSM 20419 ATCC 13715 CIP 108565 JCM 9491 CCUG 43303 6 more

NCBI tax ID(s) 255205

Special Collections DSMZ CCUG JCM CIP Wink compendium Literature strains

History <- H. Seiler <- ATCC <- M. Grimes (Brevibacterium helvolum) DSM 20419 <-- H. Seiler <-- ATCC 13715 <-- M. Grimes. CIP <- 2004, IAM <- IFO <- ATCC <- NCIB <- M. Grimes

Links

Pseudoclavibacter helvolus DSM 20419 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from butter.

Gram-positive rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 362264

ATCC 13715,NCIB 8989,DSM 20419,JCM 9491,IFO 15775,LMG 21450,CCUG 43303,IAM 14726,NBRC 15775,TISTR 1509,CIP 108565

@ref 20215

Last LPSN update 2026-02-09 11:19:29

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Microbacteriaceae

Genus Pseudoclavibacter

Species Pseudoclavibacter helvolus

Full scientific name Pseudoclavibacter helvolus Manaia et al. 2004

Synonyms (1)

Zimmermannella helvola

BacDive ID	Other strains from **Pseudoclavibacter helvolus** (1)	Type strain
154433	P. helvolus CCUG 53577

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
30029	positive	1 µm	0.45 µm	rod-shaped
119870	positive			rod-shaped
125439	positive				99.1

Colony morphology

@ref	Colony color	Incubation period	Medium used
18745	Beige	10-14 days	ISP 2
18745	Beige	10-14 days	ISP 3
18745	Beige	10-14 days	ISP 4
18745	Beige	10-14 days	ISP 5
18745	Golden yellow	10-14 days	ISP 6
18745	Beige	10-14 days	ISP 7
119870

Multicellular morphology

@ref	Forms multicellular complex	Medium name
18745		ISP 2
18745		ISP 3
18745		ISP 4
18745		ISP 5
18745		ISP 6
18745		ISP 7

Pigmentation

30029

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
8802	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
18745	ISP 2		Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
18745	ISP 3		Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
18745	ISP 4		Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
18745	ISP 5		Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
18745	ISP 6		Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
18745	ISP 7		Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
38283	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
119870	CIP Medium 111	Medium recipe at CIP
119870	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
8802	positive	growth	30
18745	positive	optimum	28
30029	positive	growth	10-35
30029	positive	optimum	29
38283	positive	growth	30
55779	positive	growth	20-30
67770	positive	growth	28
119870	positive	growth	10-30
119870	negative	growth	37
119870	negative	growth	41

Culture pH

@ref	Ability	Type	PH	PH range
30029	positive	growth	06-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
30029	aerobe
55779	aerobe
119870	obligate aerobe

Spore formation

30029

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30029	NaCl	positive	growth	0-6 %
30029	NaCl	positive	optimum	1 %
119870	NaCl	positive	growth	2-6 %
119870	NaCl		growth	0 %
119870	NaCl		growth	8 %
119870	NaCl		growth	10 %

Murein

@ref	Murein short key	Type
8802	B07	B2gamma {Gly} [L-Dab] D-Glu-D-Dab

Observation

67770

Observationquinones: MK-9

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30029	62064 ChEBI	2,3-butanediol	+	carbon source
30029	16449 ChEBI	alanine	+	carbon source
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
18745	22599 ChEBI	arabinose	+
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
18745	62968 ChEBI	cellulose	-
119870	16947 ChEBI	citrate	-	carbon source
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
30029	4853 ChEBI	esculin	+	hydrolysis
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
119870	4853 ChEBI	esculin	-	hydrolysis
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
18745	28757 ChEBI	fructose	+
30029	28757 ChEBI	fructose	+	carbon source
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
18745	17234 ChEBI	glucose	+
30029	17234 ChEBI	glucose	+	carbon source
30029	29987 ChEBI	glutamate	+	carbon source
30029	17754 ChEBI	glycerol	+	carbon source
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
119870	606565 ChEBI	hippurate	+	hydrolysis
30029	17596 ChEBI	inosine	+	carbon source
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
30029	17716 ChEBI	lactose	+	carbon source
30029	17306 ChEBI	maltose	+	carbon source
18745	29864 ChEBI	mannitol	+
30029	29864 ChEBI	mannitol	+	carbon source
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
30029	51850 ChEBI	methyl pyruvate	+	carbon source
18745	17268 ChEBI	myo-inositol	+
30029	506227 ChEBI	N-acetylglucosamine	+	carbon source
119870	17632 ChEBI	nitrate	-	reduction
119870	17632 ChEBI	nitrate	-	respiration
119870	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
30029	15361 ChEBI	pyruvate	+	carbon source
18745	16634 ChEBI	raffinose	-
30029	16634 ChEBI	raffinose	+	carbon source
18745	26546 ChEBI	rhamnose	+
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
18745	17992 ChEBI	sucrose	+
30029	17992 ChEBI	sucrose	+	carbon source
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
30029	17748 ChEBI	thymidine	+	carbon source
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
30029	53426 ChEBI	tween 80	+	carbon source
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne
30029	16704 ChEBI	uridine	+	carbon source
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid
18745	18222 ChEBI	xylose	-

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
119870	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
119870	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
119870	15688 ChEBI	acetoin	-

Enzymes

@ref	Value	Activity	Ec
30029	acid phosphatase	+	3.1.3.2
119870	alcohol dehydrogenase	-	1.1.1.1
30029	alkaline phosphatase	+	3.1.3.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68379	alkaline phosphatase	-	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68379	alpha-glucosidase	+	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
119870	amylase	+
68382	beta-galactosidase	+	3.2.1.23	from API zym
119870	beta-galactosidase	+	3.2.1.23
68379	beta-galactosidase	+	3.2.1.23	from API Coryne
68382	beta-glucosidase	-	3.2.1.21	from API zym
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
119870	caseinase	-	3.4.21.50
119870	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
30029	cytochrome oxidase	+	1.9.3.1
119870	DNase	+
68382	esterase (C 4)	+		from API zym
119870	gamma-glutamyltransferase	-	2.3.2.2
119870	gelatinase	+/-
68379	gelatinase	-		from API Coryne
119870	lecithinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
119870	lipase	-
68382	lipase (C 14)	-		from API zym
119870	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
119870	ornithine decarboxylase	-	4.1.1.17
119870	oxidase	-
119870	phenylalanine ammonia-lyase	-	4.3.1.24
119870	protease	-
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	+	3.4.19.3	from API Coryne
68382	trypsin	-	3.4.21.4	from API zym
119870	tryptophan deaminase	-
119870	tween esterase	+
119870	urease	-	3.5.1.5
68379	urease	-	3.5.1.5	from API Coryne

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
18745	not determinedn.d.	-	+	-	-	+	+	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	-	not determinedn.d.	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
18745	not determinedn.d.	-	+	+	-	+	+	-	-	-	-	-	-	+	-	+	-	-	-	-
119870	-	-	+	-	-	+	-	-	-	-	+	+	-	+	-	-	-	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
119870	not determinedn.d.	+/-	-	-	-	-	-	-	-	-	-	+/-	+/-	+/-	-	-	-	+/-	+/-	+/-	-	-	+/-	-	-	-	-	+/-	+/-	+/-	-	+/-	+/-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Dairy product

Isolation

@ref	Sample type
8802	butter
55779	Butter
67770	Butter
119870	Butter

Taxonmaps

69479

Global distribution of 16S sequence X77440 (>99% sequence identity) for Pseudoclavibacter from Microbeatlas

Aquatic Samples	4455
Soil Samples	3618
Animal Samples	6248
Plant Samples	2821
Total Samples	17142

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
8802	1	Risk group (German classification) According to TRBA 466
18745	1	Risk group (German classification) According to TRBA 466
119870	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1419130v1 assembly for Pseudoclavibacter helvolus DSM 20419	contig	GCA_014191305	255205.14	2824195264	255205	59.34
124043	ASM4243138v1 assembly for Pseudoclavibacter helvolus JCM 9491	scaffold	GCA_042431385			255205	17.42
124043	ASM4265254v1 assembly for Pseudoclavibacter helvolus JCM 9491	contig	GCA_042652545			255205	6.57

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
8802	Pseudoclavibacter helvolus 16S rRNA gene, type strain DSM 20419	X77440	1462		255205

GC content

@ref	GC-content (mol%)	Method
8802	72.2
30029	67
67770	72.2	thermal denaturation, midpoint method (Tm)
67770	67	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pseudoclavibacter helvolus DSM 20419
NCBI: GCA_014191305

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	77.40	no
125439	motility	BacteriaNetⓘ	no	81.40	no
125439	gram_stain	BacteriaNetⓘ	positive	99.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	76.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudoclavibacter helvolus strain DSM 20419
PATRIC: 255205.14

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.83	yes
125438	anaerobic	anaerobicⓘ	no	95.93	yes
125438	spore-forming	spore-formingⓘ	no	76.06	no
125438	aerobic	aerobicⓘ	yes	82.81	yes
125438	thermophilic	thermophileⓘ	no	95.91	no
125438	flagellated	motile2+ⓘ	no	89.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Draft Genome Assembly of Two Pseudoclavibacter helvolus Strains, G8 and W3, Isolated from Slaughterhouse Environments.	Raghupathi PK, Herschend J, Roder HL, Sorensen SJ, Burmolle M.	Genome Announc	10.1128/genomea.00077-16	2016
Enzymology	Pseudoclavibacter otitis media in a 3-year-old boy with pulmonary and spinal tuberculosis.	Ayuthaya SIN, Leelaporn A, Kiratisin P, Oberdorfer P.	Medicine (Baltimore)	10.1097/md.0000000000000709	2015
Phylogeny	Pseudoclavibacter endophyticus sp. nov., isolated from roots of Glycyrrhiza uralensis.	Li YQ, Li L, Fu YS, Cui ZQ, Duan YQ, Salam N, Guo JW, Chen W, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.000876	2016
Phylogeny	Pseudoclavibacter chungangensis sp. nov., isolated from activated sludge.	Cho SL, Jung MY, Park MH, Chang YH, Yoon JH, Myung SC, Kim W	Int J Syst Evol Microbiol	10.1099/ijs.0.015552-0	2009
Phylogeny	Pseudoclavibacter soli sp. nov., a {beta}-glucosidase-producing bacterium.	Kim MK, Jung HY	Int J Syst Evol Microbiol	10.1099/ijs.0.65627-0	2009
Phylogeny	Zimmermannella helvola gen. nov., sp. nov., Zimmermannella alba sp. nov., Zimmermannella bifida sp. nov., Zimmermannella faecalis sp. nov. and Leucobacter albus sp. nov., novel members of the family Microbacteriaceae.	Lin YC, Uemori K, de Briel DA, Arunpairojana V, Yokota A	Int J Syst Evol Microbiol	10.1099/ijs.0.02741-0	2004
Phylogeny	Gulosibacter molinativorax gen. nov., sp. nov., a molinate-degrading bacterium, and classification of 'Brevibacterium helvolum' DSM 20419 as Pseudoclavibacter helvolus gen. nov., sp. nov.	Manaia CM, Nogales B, Weiss N, Nunes OC	Int J Syst Evol Microbiol	10.1099/ijs.0.02851-0	2004

References

#8802	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20419
#18745	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26393	IJSEM 783 2004 ( DOI 10.1099/ijs.0.02851-0 , PubMed 15143025 )
#30029	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26393
#38283	; Curators of the CIP;
#55779	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 43303
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#119870	Collection of Institut Pasteur ; Curators of the CIP; CIP 108565
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudoclavibacter helvolus (DSM 20419, ATCC 13715, CIP 108565)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Murein

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

API coryne

API zym

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014191305

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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