Microbacterium immunditiarum (DSM 24662, JCM 14034, MTCC 7185)

Name: Microbacterium immunditiarum (DSM 24662, JCM 14034, MTCC 7185)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7463

Type strain

Strain Designation SK 18

Culture col. no. DSM 24662 JCM 14034 MTCC 7185 SK 18

NCBI tax ID(s) 337480

Special Collections DSMZ JCM Literature strains

History <- T. Chakrabarti, NCCS Complex, Univ. of Pune Campus, India; SK 18 <- S. Krishnamurthi, MTCC, Institute of Microbial Technology, Chandigarh T. Chakrabarti SK18.

Links

Microbacterium immunditiarum SK 18 is a Gram-positive, rod-shaped prokaryote that was isolated from surface soil from a municipal landfill.

Gram-positive rod-shaped genome sequence 16S sequence

Name and taxonomic classification

SI-ID 132445

JCM 14034

@ref 20215

Last LPSN update 2025-12-16 09:48:35

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Microbacteriaceae

Genus Microbacterium

Species Microbacterium immunditiarum

Full scientific name Microbacterium immunditiarum Krishnamurthi et al. 2012

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
30321	positive	rod-shaped
125439	positive		98
125438			94
125438	positive		90.329

Pigmentation

30321

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
30321	positive	growth	15-37
30321	positive	optimum	30	mesophilic
67770	positive	growth	28	mesophilic

Culture pH

@ref	Ability	Type	PH
30321	positive	optimum	7.5
30321	positive	growth	06-08

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.9

Spore formation

30321

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30321	NaCl	positive	growth	<3 %

Observation

67770

Observationquinones: MK-13, MK-12

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30321	4853 ChEBI	esculin	+	hydrolysis
30321	17632 ChEBI	nitrate	+	reduction

Enzymes

@ref	Value	Activity	Ec
30321	catalase	+	1.11.1.6
30321	gelatinase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Waste	#Landfill
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
17724	surface soil from a municipal landfill	Chandigarh	India	IND	Asia
67770	Landfill surface soil in Chandigarh		India	IND	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17724	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM1340978v1 assembly for Microbacterium immunditiarum DSM 24662	contig	GCA_013409785	337480.3	2845010473	337480	76.59

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
17724	Microbacterium immunditiarum strain SK 18 16S ribosomal RNA gene, partial sequence	DQ119293	1432		337480

GC content

@ref	GC-content (mol%)	Method
17724	76.6	thermal denaturation, midpoint method (Tm)
30321	76.6

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Microbacterium immunditiarum DSM 24662
NCBI: GCA_013409785

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	68.60	no
125439	motility	BacteriaNetⓘ	no	63.20	no
125439	gram_stain	BacteriaNetⓘ	positive	98.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Microbacterium immunditiarum strain DSM 24662
PATRIC: 337480.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.33	yes
125438	anaerobic	anaerobicⓘ	no	98.63	no
125438	spore-forming	spore-formingⓘ	no	79.17	no
125438	aerobic	aerobicⓘ	yes	88.56	no
125438	thermophilic	thermophileⓘ	no	94.40	yes
125438	flagellated	motile2+ⓘ	no	94.00	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microbacterium protaetiae sp. nov., isolated from gut of larva of Protaetia brevitarsis seulensis.	Heo J, Cho H, Kim MA, Hamada M, Tamura T, Saitou S, Kim SK, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijsem.0.003967	2020
Phylogeny	Microbacterium rhizosphaerae sp. nov., isolated from a Ginseng field, South Korea.	Cho SJ, Lee SS	Antonie Van Leeuwenhoek	10.1007/s10482-016-0768-4	2016
Phylogeny	Microbacterium mangrovi sp. nov., an amylolytic actinobacterium isolated from mangrove forest soil.	Lee LH, Azman AS, Zainal N, Eng SK, Mutalib NA, Yin WF, Chan KG	Int J Syst Evol Microbiol	10.1099/ijs.0.062414-0	2014
Phylogeny	Microbacterium immunditiarum sp. nov., an actinobacterium isolated from landfill surface soil, and emended description of the genus Microbacterium.	Krishnamurthi S, Bhattacharya A, Schumann P, Dastager SG, Tang SK, Li WJ, Chakrabarti T	Int J Syst Evol Microbiol	10.1099/ijs.0.033373-0	2011

References

#17724	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24662
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26662	IJSEM 2187 2012 ( DOI 10.1099/ijs.0.033373-0 , PubMed 22058326 )
#30321	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26662
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Microbacterium immunditiarum (DSM 24662, JCM 14034, MTCC 7185)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_013409785

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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