Microbacterium marinum (DSM 24947, CGMCC 4.6941, H101)

Name: Microbacterium marinum (DSM 24947, CGMCC 4.6941, H101)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7460

Type strain

Strain Designation H101

Culture col. no. DSM 24947 CGMCC 4.6941 H101 JCM 19665

NCBI tax ID(s) 421115

Special Collections DSMZ JCM

History <- Y. Huang, Chinese Acad. Sci. (CAS), Beijing; CGMCC 4.6941 <- L. Xi CGMCC 4.6941 <-- L. Zhang et al. H101.

Links

Microbacterium marinum H101 is a bacterium that was isolated from concentrated seawater.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 406035

DSM 24947

@ref 20215

Last LPSN update 2026-02-09 11:19:28

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Microbacteriaceae

Genus Microbacterium

Species Microbacterium marinum

Full scientific name Microbacterium marinum Zhang et al. 2012

BacDive ID	Other strains from **Microbacterium marinum** (1)	Type strain
7461	M. marinum H207, DSM 24948, CGMCC 4.6942

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125438		91
125439		99.3	positive

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
17804	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
17804	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	97.6

Murein

@ref	Murein short key	Type
17804	B03	B1gamma {Gly} [L-Glu] D-Glu(Hyg)-Gly₂-L-Lys

Observation

67770

Observationquinones: MK-12, MK-13, MK-11

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Geographic location	Country	Latitude	Longitude
17804	concentrated seawater	South-West Indian Ocean (E/S, 49°39'/37°47') at a depth of 2800 m	International waters	-37.7833	49.65 -37.7833/49.65
67770	Deep seawater in South-West Indian Ocean

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17804	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1420483v1 assembly for Microbacterium marinum DSM 24947	contig	GCA_014204835	421115.3	2870575989	421115	78.85

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
17804	Microbacterium marinum strain H101 16S ribosomal RNA gene, partial sequence	HQ622524	1445		421115

GC content

@ref	GC-content (mol%)	Method
17804	66.5	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Microbacterium marinum DSM 24947
NCBI: GCA_014204835

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	55.10	no
125439	motility	BacteriaNetⓘ	no	87.70	no
125439	gram_stain	BacteriaNetⓘ	positive	99.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Microbacterium marinum strain DSM 24947
PATRIC: 421115.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	88.49	no
125438	anaerobic	anaerobicⓘ	no	96.37	no
125438	spore-forming	spore-formingⓘ	no	78.44	no
125438	aerobic	aerobicⓘ	yes	86.43	no
125438	thermophilic	thermophileⓘ	no	94.47	no
125438	flagellated	motile2+ⓘ	no	91.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microbacterium marinum sp. nov., isolated from deep-sea water.	Zhang L, Xi L, Ruan J, Huang Y	Syst Appl Microbiol	10.1016/j.syapm.2011.11.004	2012

References

#17804	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24947
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Microbacterium marinum (DSM 24947, CGMCC 4.6941, H101)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Murein

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014204835

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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