Microbacterium arthrosphaerae (DSM 22421, CCM 7681, CCUG 57958)

Name: Microbacterium arthrosphaerae (DSM 22421, CCM 7681, CCUG 57958)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7457

Type strain

Strain Designation CC-VM-Y, VM-Y

Culture col. no. DSM 22421 CCM 7681 CCUG 57958 CC-VM-Y VM-Y 1 more

NCBI tax ID(s) 792652

Special Collections DSMZ CCUG JCM Wink compendium

History DSMZ <- P. Kämpfer, Univ. Giessen, Germany; VM-Y <- A. B. Arun JCM <-- CCM 7681 <-- P. Kämpfer; Justus-Liebig-Univ. Giessen, Germany; CC-VM-Y.

Links

Microbacterium arthrosphaerae CC-VM-Y is a microaerophile bacterium that was isolated from faeces of the pill millipede Arthrosphaera magna Attems.

microaerophile genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 408701

JCM 30492,CCUG 57958

@ref 20215

Last LPSN update 2026-05-29 08:26:39

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Microbacteriaceae

Genus Microbacterium

Species Microbacterium arthrosphaerae

Full scientific name Microbacterium arthrosphaerae Kämpfer et al. 2011

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	95.574

Colony morphology

@ref	Colony color	Medium used	Incubation period
61541			1 day
69224	Honey yellow (1005)	ISP 6
69224	Lemon yellow (1012), ivory (1014)	suter with tyrosine
69224	Rape yellow (1021)	ISP 3
69224	Rape yellow (1021)	ISP 4
69224	Rape yellow (1021)	ISP 5
69224	Traffic yellow (1023)	ISP 2
69224	Traffic yellow (1023), light ivory (1015)	suter without tyrosine
69224	Zinc yellow (1018)	ISP 7

Multicellular morphology

@ref	Complex name	Medium name
69224	Aerial mycelium	ISP 2
69224	Aerial mycelium	ISP 3
69224	Aerial mycelium	ISP 4
69224	Aerial mycelium	ISP 5
69224	Aerial mycelium	ISP 6
69224	Aerial mycelium	ISP 7
69224	Aerial mycelium	suter with tyrosine
69224	Aerial mycelium	suter without tyrosine

Pigmentation

@ref	Production	Name
69224		melanin pigment
69224		soluble pigment

Multimedia

@ref:	69224
multimedia content:	DSM_22421_image3.jpeg
multimedia.multimedia content:	DSM_22421_image3.jpeg
caption:	Plates (GYM, ISP2, ISP3, ISP4, ISP5, ISP7)
intellectual property rights:	Helmholtz-Zentrum für Infektionsforschung GmbH
manual_annotation:	1

@ref:	69224
multimedia content:	DSM_22421_image4.jpeg
multimedia.multimedia content:	DSM_22421_image4.jpeg
caption:	Plates (GYM, ISP2, ISP3, ISP4, ISP5, ISP7)
intellectual property rights:	Helmholtz-Zentrum für Infektionsforschung GmbH
manual_annotation:	1

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
61541	positive	growth	37
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
61541	microaerophile
125439	obligate aerobe	99.468

Spore formation

@ref	Spore formation	Confidence
125439		92.37

Halophily

@ref	Salt	Growth	Tested relation	Concentration
69224	NaCl	positive	growth	0-5 %

Observation

67770

Observationquinones: MK-13, MK-12

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
69224	22599 ChEBI	arabinose	+	growth
69224	62968 ChEBI	cellulose	+/-	growth
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68379	4853 ChEBI	esculin	+	hydrolysis	from API Coryne
69224	28757 ChEBI	fructose	+/-	growth
68379	5291 ChEBI	gelatin	+	hydrolysis	from API Coryne
69224	17234 ChEBI	glucose	+	growth
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
69224	37684 ChEBI	mannose	+	growth
69224	17268 ChEBI	myo-inositol	-	growth
68379	17632 ChEBI	nitrate	+	reduction	from API Coryne
69224	16634 ChEBI	raffinose	+	growth
69224	26546 ChEBI	rhamnose	+	growth
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
69224	17992 ChEBI	sucrose	+	growth
68379	16199 ChEBI	urea	+	hydrolysis	from API Coryne
69224	18222 ChEBI	xylose	+	growth

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68379	alkaline phosphatase	-	3.1.3.1	from API Coryne
68382	alpha-fucosidase	+	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68379	alpha-glucosidase	+	3.2.1.20	from API Coryne
68382	alpha-mannosidase	+	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68379	beta-galactosidase	+	3.2.1.23	from API Coryne
68382	beta-glucosidase	+	3.2.1.21	from API zym
68379	beta-glucosidase	+	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
68382	esterase lipase (C 8)	+		from API zym
68379	gelatinase	+		from API Coryne
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API Coryne
68382	trypsin	+	3.4.21.4	from API zym
68379	urease	+	3.5.1.5	from API Coryne
68382	valine arylamidase	+		from API zym

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
69224	+	+/-	+/-	-	-	+	+	+	+	+	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
69224	not determinedn.d.	-	+/-	+	-	+	+	+/-	+	+/-	-	+/-	+	+	-	+	+	+	+	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Arthropoda	#Insecta
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent	Sampling date
16327	faeces of the pill millipede Arthrosphaera magna Attems	Arthrosphaera magna	India	IND	Asia
61541	Millipede feces,(Arthrosphaera magna Attems)		India	IND	Asia	2008
67770	Faeces of the pill millipede Arthrosphaera magna Attems from India	Arthrosphaera magna

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16327	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
124043	ASM3343682v1 assembly for Microbacterium arthrosphaerae JCM 30492	scaffold	GCA_033436825	792652.3	792652	73.95
124043	ASM4243284v1 assembly for Microbacterium arthrosphaerae CCM 7681	scaffold	GCA_042432845		792652	27.9

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16327	Microbacterium arthrosphaerae partial 16S rRNA gene, strain CC-VM-Y	FN870023	1339		792652
124043	Microbacterium arthrosphaerae strain CCM 7681 16S ribosomal RNA gene, partial sequence.	MT760166	1329		792652

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM3343682v1 assembly for Microbacterium arthrosphaerae JCM 30492
NCBI: GCA_033436825

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.47	no
125439	gram_stain	BacteriaNetⓘ	positive	95.57	no
125439	motility	BacteriaNetⓘ	no	69.05	no
125439	spore_formation	BacteriaNetⓘ	no	92.37	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microbacterium ureisolvens sp. nov., isolated from a Yellow River sample.	Cheng LJ, Ming H, Zhao ZL, Ji WL, Zhang LY, Li LY, Meng XL, Li M, Niu MM, Nie GX	Int J Syst Evol Microbiol	10.1099/ijsem.0.003203	2018
Phylogeny	Microbacterium hibisci sp. nov., isolated from rhizosphere of mugunghwa (Hibiscus syriacus L.).	Yan ZF, Lin P, Won KH, Yang JE, Li CT, Kook M, Wang QJ, Yi TH	Int J Syst Evol Microbiol	10.1099/ijsem.0.002167	2017
Phylogeny	Microbacterium aureliae sp. nov., a novel actinobacterium isolated from Aurelia aurita, the moon jellyfish.	Kaur G, Mual P, Kumar N, Verma A, Kumar A, Krishnamurthi S, Mayilraj S	Int J Syst Evol Microbiol	10.1099/ijsem.0.001407	2016
Phylogeny	Microbacterium arthrosphaerae sp. nov., isolated from the faeces of the pill millipede Arthrosphaera magna Attems.	Kampfer P, Rekha PD, Schumann P, Arun AB, Young CC, Chen WM, Sridhar KR	Int J Syst Evol Microbiol	10.1099/ijs.0.026401-0	2010

References

#16327	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22421
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#61541	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 57958
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69224	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Microbacterium arthrosphaerae (DSM 22421, CCM 7681, CCUG 57958)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

API coryne

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_033436825

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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