Name: Microbacterium radiodurans DSM 25564
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7454

Type strain:

Species: Microbacterium radiodurans

Culture col. no.: DSM 25564, CCTCC M208212, NRRL B-24799, GIMN 1.002

Strain history: <- NRRL; NRRL B-24799

NCBI tax ID(s): 661398 (species)

SI-ID 405960

DSM 25564

Section

Microbacterium radiodurans DSM 25564 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from upper sand layers.

Gram-positive
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Microbacterium*
	Species	**Microbacterium radiodurans**
	Full Scientific Name (LPSN)	Microbacterium radiodurans Zhang et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29631]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #29631]	Cell length	0.5-0.8 µm

[Ref.: #29631]	Cell width	0.4-0.6 µm

[Ref.: #29631]	Cell shape	rod-shaped

[Ref.: #29631]	Motility	yes
[Ref.: #69480]	Motility	no Confidence in %90.437

[Ref.: #29631]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18049]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #18049]

Culture medium growth

[Ref.: #18049]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18049]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #18049]	growth	28 °C
[Ref.: #29631]	growth	18-30 °C
[Ref.: #29631]	optimum	28 °C

[Ref.: #18049]	Temperature range	mesophilic
[Ref.: #29631]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29631]			optimum	7
[Ref.: #29631]			growth	06-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29631]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.99

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29631]		NaCl		growth	0-7	%
[Ref.: #29631]		NaCl		optimum	0-7	%

[Ref.: #29631]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29631]	cellobiose ChEBI	+	carbon source
[Ref.: #29631]	fructose ChEBI	+	carbon source
[Ref.: #29631]	glucose ChEBI	+	carbon source
[Ref.: #29631]	malate ChEBI	+	carbon source
[Ref.: #29631]	maltose ChEBI	+	carbon source
[Ref.: #29631]	mannitol ChEBI	+	carbon source
[Ref.: #29631]	mannose ChEBI	+	carbon source
[Ref.: #29631]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #29631]	sorbitol ChEBI	+	carbon source
[Ref.: #29631]	trehalose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29631]		catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18049]	Sample type/isolated from	upper sand layers
[Ref.: #18049]	Geographic location (country and/or sea, region)	Xinjiang, Gobi desert
[Ref.: #18049]	Country	China
[Ref.: #18049]	Country ISO 3 Code	CHN
[Ref.: #18049]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Sandy

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18049]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18049]	Microbacterium radiodurans strain GIMN 1.002 16S ribosomal RNA gene, partial sequence	GQ329713	1430	ENA	661398 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Microbacterium radiodurans DSM 25564	GCA_008710705	contig	GenBank	661398 tax ID	*
[Ref.: #66792]	Microbacterium radiodurans strain DSM 25564	661398.3	wgs	PATRIC	661398 tax ID	*

[Ref.: #18049]	GC-content	67.7 mol%
[Ref.: #29631]	GC-content	67.74 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Microbacterium radiodurans strain DSM 25564 PATRIC: 661398.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Microbacterium radiodurans strain DSM 25564 PATRIC: 661398.3
[Ref.: #69480]	gram-positive	yes	93.156	yes
[Ref.: #69480]	anaerobic	no	99.54	yes
[Ref.: #69480]	halophile	no	84.906	no
[Ref.: #69480]	spore-forming	no	94.406	no
[Ref.: #69480]	glucose-util	yes	85.393	yes
[Ref.: #69480]	thermophile	no	99.356	yes
[Ref.: #69480]	flagellated	no	97.496	no
[Ref.: #69480]	motile	no	89.28	yes
[Ref.: #69480]	aerobic	yes	91.496	no
[Ref.: #69480]	glucose-ferment	no	85.04	no

Availability in culture collections External links

[Ref.: #18049]

Culture collection no.

DSM 25564, CCTCC M208212, NRRL B-24799, GIMN 1.002

[Ref.: #76901]

SI-ID 405960

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microbacterium caowuchunii sp. nov. and Microbacterium lushaniae sp. nov., isolated from plateau pika (Ochotona curzoniae) on the Qinghai-Tibet Plateau of PR China.	Tian Z, Yang J, Lai XH, Pu J, Jin D, Luo X, Huang Y, Li J, Zhang G, Wang S, Xu J	Int J Syst Evol Microbiol	10.1099/ijsem.0.004662	2021	*
Phylogeny	Microbacterium radiodurans sp. nov., a UV radiation-resistant bacterium isolated from soil.	Zhang W, Zhu HH, Yuan M, Yao Q, Tang R, Lin M, Yang SZ, Li ZK, Chen M	Int J Syst Evol Microbiol	10.1099/ijs.0.017400-0	2010	*

References

#18049

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25564

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29631

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26021 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#76901

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405960.1 )

#26021

IJSEM 2665 2010 ( DOI 10.1099/ijs.0.017400-0 , PubMed 20061506 )

* These data were automatically processed and therefore are not curated

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Microbacterium radiodurans strain DSM 25564

Microbacterium radiodurans strain DSM 25564

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