Name: Microbacterium foliorum P 333/02
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7410

Type strain:

Species: Microbacterium foliorum

Strain Designation: P 333/02, P333/02

Culture col. no.: DSM 12966, LMG 19580, NRRL B-24224, JCM 11569, CIP 107137, IAM 15188, KCTC 19915, NBRC 103072, NCIMB 14329

Strain history: CIP <- 2001, U. Behrendt, ZALF, Müncheberg, Germany: strain P333/02

NCBI tax ID(s): 104336 (species)

SI-ID 14966

LMG 19580, DSM 12966, JCM 11569, KCTC 19915, CIP 107137, NRRL B-24224, IAM 15188, NBRC 103072

Other strains from Microbacterium foliorum

M. foliorum CCUG 57014

Section

Microbacterium foliorum P 333/02 is a mesophilic, Gram-positive, motile bacterium that was isolated from phyllosphere of grasses.

Gram-positive
motile
rod-shaped
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Microbacterium*
	Species	**Microbacterium foliorum**
	Full Scientific Name (LPSN)	Microbacterium foliorum Behrendt et al. 2001

Information on morphological and physiological properties Morphology

[Ref.: #119417]	Gram stain	positive

[Ref.: #119417]	Cell shape	rod-shaped

[Ref.: #119417]	Motility	yes

[Ref.: #18373]	Colony color	Lemon yellow (1012)
[Ref.: #18373]	Incubation period	10-14 days
[Ref.: #18373]	Cultivation medium used	ISP 2

[Ref.: #18373]	Colony color	Lemon yellow (1012)
[Ref.: #18373]	Incubation period	10-14 days
[Ref.: #18373]	Cultivation medium used	ISP 3

[Ref.: #18373]	Colony color	Lemon yellow (1012)
[Ref.: #18373]	Incubation period	10-14 days
[Ref.: #18373]	Cultivation medium used	ISP 4

[Ref.: #18373]	Colony color	Lemon yellow (1012)
[Ref.: #18373]	Incubation period	10-14 days
[Ref.: #18373]	Cultivation medium used	ISP 5

[Ref.: #18373]	Colony color	Lemon yellow (1012)
[Ref.: #18373]	Incubation period	10-14 days
[Ref.: #18373]	Cultivation medium used	ISP 6

[Ref.: #18373]	Colony color	Lemon yellow (1012)
[Ref.: #18373]	Incubation period	10-14 days
[Ref.: #18373]	Cultivation medium used	ISP 7

[Ref.: #18373]	Multicellular complex forming ability	no
[Ref.: #18373]	Medium Name (multicellularity)	ISP 2

[Ref.: #18373]	Multicellular complex forming ability	no
[Ref.: #18373]	Medium Name (multicellularity)	ISP 3

[Ref.: #18373]	Multicellular complex forming ability	no
[Ref.: #18373]	Medium Name (multicellularity)	ISP 4

[Ref.: #18373]	Multicellular complex forming ability	no
[Ref.: #18373]	Medium Name (multicellularity)	ISP 5

[Ref.: #18373]	Multicellular complex forming ability	no
[Ref.: #18373]	Medium Name (multicellularity)	ISP 6

[Ref.: #18373]	Multicellular complex forming ability	no
[Ref.: #18373]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4869]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #4869]

Culture medium growth

[Ref.: #4869]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4869]

Culture medium composition

expand / minimize

[Ref.: #18373]

Culture medium

ISP 2

[Ref.: #18373]

Culture medium growth

[Ref.: #18373]

Culture medium composition

expand / minimize

[Ref.: #18373]

Culture medium

ISP 3

[Ref.: #18373]

Culture medium growth

[Ref.: #18373]

Culture medium composition

expand / minimize

[Ref.: #18373]

Culture medium

ISP 4

[Ref.: #18373]

Culture medium growth

[Ref.: #18373]

Culture medium composition

expand / minimize

[Ref.: #18373]

Culture medium

ISP 5

[Ref.: #18373]

Culture medium growth

[Ref.: #18373]

Culture medium composition

expand / minimize

[Ref.: #18373]

Culture medium

ISP 6

[Ref.: #18373]

Culture medium growth

[Ref.: #18373]

Culture medium composition

expand / minimize

[Ref.: #18373]

Culture medium

ISP 7

[Ref.: #18373]

Culture medium growth

[Ref.: #18373]

Culture medium composition

expand / minimize

[Ref.: #38188]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #38188]

Culture medium growth

[Ref.: #38188]

Culture medium composition

expand / minimize

[Ref.: #119417]

Culture medium

CIP Medium 72

[Ref.: #119417]

Culture medium growth

[Ref.: #119417]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #4869]		growth	28 °C
[Ref.: #18373]		optimum	28 °C
[Ref.: #38188]		growth	25 °C
[Ref.: #67770]		growth	28 °C
[Ref.: #119417]		growth	10-30 °C
[Ref.: #119417]	no	growth	37 °C
[Ref.: #119417]	no	growth	41 °C
[Ref.: #119417]	no	growth	45 °C

[Ref.: #4869]	Temperature range	mesophilic
[Ref.: #18373]	Temperature range	mesophilic
[Ref.: #38188]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #119417]	Temperature range	mesophilic
[Ref.: #119417]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #119417]		NaCl		growth	0-10	%

[Ref.: #4869]	Murein short key	B06
[Ref.: #4869]	Murein types	B2ß {Gly} [L-Hsr] D-Glu(Hyg)-Gly-D-Orn

[Ref.: #67770]

Observation

quinones: MK-12, MK-11

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #119417]	citrate ChEBI	-	carbon source
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #119417]	esculin ChEBI	+	hydrolysis
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #119417]	hippurate ChEBI	+	hydrolysis
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #119417]	nitrate ChEBI	-	reduction
[Ref.: #119417]	nitrate ChEBI	-	respiration
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #119417]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #119417]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no

	Metabolite production	Metabolite	Production
[Ref.: #119417]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #119417]		acetoin ChEBI	-
[Ref.: #119417]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #119417]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym, API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym, API Coryne
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #119417]	amylase	+
[Ref.: #119417]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym, API Coryne
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym, API Coryne
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API Coryne
[Ref.: #119417]	caseinase	+	3.4.21.50
[Ref.: #119417]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #119417]	DNase	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #119417]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #119417]	gelatinase	+/-
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #119417]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #119417]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #119417]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne
[Ref.: #119417]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #119417]	oxidase	-
[Ref.: #119417]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #119417]	protease	+
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #119417]	tryptophan deaminase	-
[Ref.: #119417]	tween esterase	-
[Ref.: #119417]	urease	-	3.5.1.5
[Ref.: #68379]	urease	+	3.5.1.5	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #119417]	10852	not determinedn.d.	+/-	-	+/-	+/-	-	+/-	-	-	-	+/-	+/-	+/-	+/-	-	-	-	-	+/-	-	+/-	+/-	-	-	+/-	+/-	+/-	+/-	+/-	-	-	+/-	+/-	-	+/-	-	-	-	-	+/-	+/-	-	-	-	+/-	-	-	+/-	-	+/-

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #119417]	2024	not determinedn.d.	+	+	+	+	+	-	-	+	-	+	+	-	-	-	-	+	+	+	+	-	-	-	+	-	-	+	-	-	-	-	-	+	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	-	-	+	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #18373]	60	-	-	-	-	-	+	+	-	+	+	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18373]	83	not determinedn.d.	-	+	+	-	+	-	-	-	-	-	-	+	+	-	+	+	-	+	-
[Ref.: #119417]	10095	-	-	+	+	-	+	+	-	+	-	+	+	+	+	-	+	+	+	+	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	lipoate biosynthesis	100	5 of 5
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	threonine metabolism	100	10 of 10
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	phenylacetate degradation (aerobic)	100	5 of 5
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	teichoic acid biosynthesis	100	1 of 1
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	cellulose degradation	100	5 of 5
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	glycolysis	94.12	16 of 17
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	ketogluconate metabolism	87.5	7 of 8
[Ref.: #66794]	gluconeogenesis	87.5	7 of 8
[Ref.: #66794]	glutamate and glutamine metabolism	85.71	24 of 28
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	glycolate and glyoxylate degradation	83.33	5 of 6
[Ref.: #66794]	proline metabolism	81.82	9 of 11
[Ref.: #66794]	pentose phosphate pathway	81.82	9 of 11
[Ref.: #66794]	gallate degradation	80	4 of 5
[Ref.: #66794]	Entner Doudoroff pathway	80	8 of 10
[Ref.: #66794]	starch degradation	80	8 of 10
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	80	4 of 5
[Ref.: #66794]	citric acid cycle	78.57	11 of 14
[Ref.: #66794]	heme metabolism	78.57	11 of 14
[Ref.: #66794]	NAD metabolism	77.78	14 of 18
[Ref.: #66794]	CO2 fixation in Crenarchaeota	77.78	7 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	77.78	7 of 9
[Ref.: #66794]	valine metabolism	77.78	7 of 9
[Ref.: #66794]	vitamin B1 metabolism	76.92	10 of 13
[Ref.: #66794]	leucine metabolism	76.92	10 of 13
[Ref.: #66794]	phenylalanine metabolism	76.92	10 of 13
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	coenzyme A metabolism	75	3 of 4
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	C4 and CAM-carbon fixation	75	6 of 8
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	peptidoglycan biosynthesis	73.33	11 of 15
[Ref.: #66794]	alanine metabolism	72.41	21 of 29
[Ref.: #66794]	degradation of hexoses	72.22	13 of 18
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	propanol degradation	71.43	5 of 7
[Ref.: #66794]	pyrimidine metabolism	68.89	31 of 45
[Ref.: #66794]	degradation of sugar alcohols	68.75	11 of 16
[Ref.: #66794]	tryptophan metabolism	68.42	26 of 38
[Ref.: #66794]	degradation of sugar acids	68	17 of 25
[Ref.: #66794]	IAA biosynthesis	66.67	2 of 3
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	aspartate and asparagine metabolism	66.67	6 of 9
[Ref.: #66794]	enterobactin biosynthesis	66.67	2 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	d-mannose degradation	66.67	6 of 9
[Ref.: #66794]	purine metabolism	65.96	62 of 94
[Ref.: #66794]	tetrahydrofolate metabolism	64.29	9 of 14
[Ref.: #66794]	degradation of pentoses	64.29	18 of 28
[Ref.: #66794]	metabolism of disaccharids	63.64	7 of 11
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	oxidative phosphorylation	62.64	57 of 91
[Ref.: #66794]	isoleucine metabolism	62.5	5 of 8
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	histidine metabolism	62.07	18 of 29
[Ref.: #66794]	isoprenoid biosynthesis	61.54	16 of 26
[Ref.: #66794]	methionine metabolism	61.54	16 of 26
[Ref.: #66794]	cysteine metabolism	61.11	11 of 18
[Ref.: #66794]	myo-inositol biosynthesis	60	6 of 10
[Ref.: #66794]	4-hydroxyphenylacetate degradation	60	6 of 10
[Ref.: #66794]	propionate fermentation	60	6 of 10
[Ref.: #66794]	arginine metabolism	58.33	14 of 24
[Ref.: #66794]	lipid metabolism	58.06	18 of 31
[Ref.: #66794]	non-pathway related	57.89	22 of 38
[Ref.: #66794]	ubiquinone biosynthesis	57.14	4 of 7
[Ref.: #66794]	reductive acetyl coenzyme A pathway	57.14	4 of 7
[Ref.: #66794]	androgen and estrogen metabolism	56.25	9 of 16
[Ref.: #66794]	phenol degradation	55	11 of 20
[Ref.: #66794]	lysine metabolism	52.38	22 of 42
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	cyclohexanol degradation	50	2 of 4
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	lactate fermentation	50	2 of 4
[Ref.: #66794]	CMP-KDO biosynthesis	50	2 of 4
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	tyrosine metabolism	50	7 of 14
[Ref.: #66794]	dTDPLrhamnose biosynthesis	50	4 of 8
[Ref.: #66794]	3-phenylpropionate degradation	46.67	7 of 15
[Ref.: #66794]	urea cycle	46.15	6 of 13
[Ref.: #66794]	vitamin B6 metabolism	45.45	5 of 11
[Ref.: #66794]	ascorbate metabolism	45.45	10 of 22
[Ref.: #66794]	lipid A biosynthesis	44.44	4 of 9
[Ref.: #66794]	carotenoid biosynthesis	40.91	9 of 22
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	ethylmalonyl-CoA pathway	40	2 of 5
[Ref.: #66794]	factor 420 biosynthesis	40	2 of 5
[Ref.: #66794]	arachidonic acid metabolism	38.89	7 of 18
[Ref.: #66794]	phenylpropanoid biosynthesis	38.46	5 of 13
[Ref.: #66794]	cholesterol biosynthesis	36.36	4 of 11
[Ref.: #66794]	glutathione metabolism	35.71	5 of 14
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	33.33	4 of 12
[Ref.: #66794]	cyanate degradation	33.33	1 of 3
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	4-hydroxymandelate degradation	33.33	3 of 9
[Ref.: #66794]	coenzyme M biosynthesis	30	3 of 10
[Ref.: #66794]	mevalonate metabolism	28.57	2 of 7
[Ref.: #66794]	benzoyl-CoA degradation	28.57	2 of 7
[Ref.: #66794]	methanogenesis from CO2	25	3 of 12
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
[Ref.: #66794]	biotin biosynthesis	25	1 of 4
[Ref.: #66794]	sulfate reduction	23.08	3 of 13
[Ref.: #66794]	nitrate assimilation	22.22	2 of 9
[Ref.: #66794]	polyamine pathway	21.74	5 of 23
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4869]	Sample type/isolated from	phyllosphere of grasses
[Ref.: #4869]	Country	Germany
[Ref.: #4869]	Country ISO 3 Code	DEU
[Ref.: #4869]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Phyllosphere of grasses

[Ref.: #119417]	Sample type/isolated from	Phyllosphere of grasses
[Ref.: #119417]	Geographic location (country and/or sea, region)	Paulinenaue
[Ref.: #119417]	Country	Germany
[Ref.: #119417]	Country ISO 3 Code	DEU
[Ref.: #119417]	Continent	Europe
[Ref.: #119417]	Isolation date	1993
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Leaf (Phyllosphere)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ249780 (>99% sequence identity) for Microbacterium from Microbeatlas

Aquatic Samples	1834
Soil Samples	2516
Animal Samples	5498
Plant Samples	1280
Total Samples	11128

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4869]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119417]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4869]	Microbacterium foliorum partial 16S rRNA gene, strain DSM 12966	AJ249780	1480	ENA	104336 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Microbacterium foliorum NRRL B-24224	GCA_003367705	complete	GenBank	104336 tax ID
[Ref.: #67770]	Microbacterium foliorum DSM 12966	GCA_000956415	contig	GenBank	104336 tax ID
[Ref.: #66792]	Microbacterium foliorum strain DSM 12966	104336.4	wgs	PATRIC	104336 tax ID	*
[Ref.: #66792]	Microbacterium foliorum DSM 12966	2867847951	draft	JGI IMG/M	104336 tax ID	*
[Ref.: #66792]	Microbacterium foliorum DSM 12966	2751185893	draft	JGI IMG/M	104336 tax ID	*
[Ref.: #66792]	Microbacterium foliorum DSM 12966	GCA_024168445	contig	GenBank	104336 tax ID	*

[Ref.: #4869]	GC-content	67 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	68.7 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Microbacterium foliorum strain DSM 12966 PATRIC: 104336.4
[Ref.: #69480]	motile	yes	60.056	no
[Ref.: #69480]	flagellated	no	90.961	no
[Ref.: #69480]	gram-positive	yes	92.374	no
[Ref.: #69480]	anaerobic	no	99.604	no
[Ref.: #69480]	aerobic	yes	93.145	no
[Ref.: #69480]	halophile	no	89.623	no
[Ref.: #69480]	spore-forming	no	89.563	no
[Ref.: #69480]	thermophile	no	99.643	yes
[Ref.: #69480]	glucose-util	yes	82.866	no
[Ref.: #69480]	glucose-ferment	no	90.849	yes

Availability in culture collections External links

[Ref.: #4869]

Culture collection no.

DSM 12966, LMG 19580, NRRL B-24224, JCM 11569, CIP 107137, IAM 15188, KCTC 19915, NBRC 103072, NCIMB 14329

[Ref.: #76859]

SI-ID 14966

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete Genome Sequence of Bacteriophage IndyLu, Isolated from a Microbacterium foliorum Culture.	Suris A, Alvarado S, Butler T, Canales C, Castro M, Gaston J, Goppert M, Huckaby R, Laposky J, Lee J, Mullins E, Ustundag D, Zuniga J, Cox F, Edwards D	Microbiol Resour Announc	10.1128/MRA.01079-21	2021	*
Genetics	Genome Sequences of Akoni, Ashton, and Truong, Podoviridae Bacteriophages Isolated from Microbacterium foliorum.	Fakhre F, Gonzalez RM, Howells EK, Otero L, Pegoraro KN, Robichaux KC, Rodier A, Sadowski CL, Carter VP, Gray AD, Klein GC, Lebosada C, Miklaszewski CM, Sutton SN, Chase MA, Coleman CN, Corbett B, Cunha MO, Daffner M, Deam CJ, Deloso LJ, DeSomma AM, Pinera Gallardo J, Horne ME, Kanahan O, Lam V, Morgan RT, Mustor EM, Ricardo-Iglesias M, Sartorio CJ, Sciacchitano AR, Tvenstrup AW, Wood AR, Pollenz RS	Microbiol Resour Announc	10.1128/MRA.00516-21	2021	*
Genetics	Complete Genome Sequence of Microbacterium Bacteriophage Erla.	Milhaven M, Hastings E, Brister D, Cevallos L, Chilukuri S, Diyya A, Garg A, Hernandez R, Kelly D, Lazo K, Le J, Maag G, Marfatia PD, Mehta R, Nejad A, Porche J, Queiroz A, Sackett D, Santos Molina P, Slade T, So M, Thakur K, Urquidez Negrete A, Wackett S, Weiss S, McCarthy L, Wheaton K, Rudner AD, McCutcheon JP, Pfeifer SP	Microbiol Resour Announc	10.1128/MRA.01354-20	2021	*
Genetics	Genome Sequences of Bacteriophages ClearAsMud and Kauala, Isolated from Microbacterium foliorum.	Lin H, Reeves M, Acevedo M, Bass K, Chau E, Ching B, Enriquez E, Evans S, Mamora K, Pang C, Santos M, Tafoya C, Vaca M, Van Iderstein W, Velasco L, Williams V, Yonemoto G, Yonemoto T, Choi J, Dean N, Diaz A	Microbiol Resour Announc	10.1128/MRA.01026-20	2020	*
Genetics	Complete Genome Sequence of Microbacterium foliorum NRRL B-24224, a Host for Bacteriophage Discovery.	Russell DA, Garlena RA, Hatfull GF	Microbiol Resour Announc	10.1128/MRA.01467-18	2019	*
Genetics	Genome Sequences of Three Microbacterium Phages Isolated from Flowers.	Iles KS, Zack KM, Betsko AJ, Garlena RA, Russell DA, Fetters A, Jacobs-Sera D, Ashman TL, Hatfull GF	Microbiol Resour Announc	10.1128/MRA.01468-18	2019	*
Genetics	Genome Sequences of Ilzat and Eleri, Two Phages Isolated Using Microbacterium foliorum NRRL B-24224.	Ali I, Jones AE, Mohamed A, Sivanathan V	Genome Announc	10.1128/genomeA.00144-18	2018	*
Phylogeny	Microbacterium murale sp. nov., isolated from an indoor wall.	Kampfer P, Schafer J, Lodders N, Martin K	Int J Syst Evol Microbiol	10.1099/ijs.0.037705-0	2011	*
Phylogeny	Microbacterium xylanilyticum sp. nov., a xylan-degrading bacterium isolated from a biofilm.	Kim KK, Park HY, Park W, Kim IS, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.63706-0	2005	*
Phylogeny	Description of Microbacterium foliorum sp. nov. and Microbacterium phyllosphaerae sp. nov., isolated from the phyllosphere of grasses and the surface litter after mulching the sward, and reclassification of Aureobacterium resistens (Funke et al. 1998) as Microbacterium resistens comb. nov..	Behrendt U, Ulrich A, Schumann P	Int J Syst Evol Microbiol	10.1099/00207713-51-4-1267	2001	*
Genetics	Genome Sequences of Microbacterium foliorum Phages Anseraureola, Pondwater, and Yasuo.	Bamgbowu D, Bsoumai J, Butura J, Cady E, Cholod G, Collibee I, Dompreh L, Eisner S, Elmaleh M, Fitzgerald K, Gillis E, Horgan A, Judd D, Keefe J, Kovalski E, LaBianca K, Lee P, Lin F, Maiuri H, McDonald C, McKnight A, Meseerole M, Mizra F, Monger E, Moore E, Nguyen N, Noel B, O'Connor D, Pagani R, Palmgren M, Pan K, Pech B, Qian J, Rastegar S, Simas B, Southard A, Tracy M, Vuong H, Whelan S, Zou A, Punska E, Pause R, Zhang F, Ribbe A, Chien P, Rocheleau J	Microbiol Resour Announc	10.1128/mra.00849-22	2022	*
Genetics	Genome Sequence and Characteristics of the Microbacterium foliorum Cluster EE Bacteriophage Burgy.	Van Roekel HF, Georgen JJ, Kock RA, Coleman ST	Microbiol Resour Announc	10.1128/mra.00912-22	2022	*
Genetics	Complete Genome Sequence of Bacteriophage Eula, Isolated on Microbacterium foliorum.	Cook T, Raffan S, Born T, Breece C, Chandler I, DiLeo H, Eudy A, Lyon K, Nicholson C, Serrano A, Sigmon M, Stevenson S, Townsell K, Van Patten G, Leonard JE, Collins DP	Microbiol Resour Announc	10.1128/mra.00728-22	2022	*
Genetics	Annotation of the Complete Genome Sequences of Bacteriophages Sara and Birdfeeder.	Adams BM, Adams JB, Brewster RL, Cutler MS, Davis AE, Gallegos AH, Hernandez JS, May LH, Montoya EG, Reagan AT, Shurley JF, Grinath AS, Thomas MA	Microbiol Resour Announc	10.1128/mra.00780-22	2022	*
Genetics	Characterization of Phages YuuY, KaiHaiDragon, and OneinaGillian Isolated from Microbacterium foliorum.	Kim U, Paul ES, Diaz A	Int J Mol Sci	10.3390/ijms23126609	2022	*

References

#4869

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12966

#18373

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#38188 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#76859

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID14966.1 )

#119417 Collection of Institut Pasteur ; Curators of the CIP; CIP 107137
* These data were automatically processed and therefore are not curated

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Microbacterium foliorum strain DSM 12966

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