Microbacterium schleiferi S 110 is an obligate aerobe, Gram-positive, rod-shaped bacterium that was isolated from dairy sewage.
Gram-positive rod-shaped obligate aerobe genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Micrococcales |
| Family Microbacteriaceae |
| Genus Microbacterium |
| Species Microbacterium schleiferi |
| Full scientific name Microbacterium schleiferi (Yokota et al. 1993) Takeuchi and Hatano 1998 |
| Synonyms (1) |
| BacDive ID | Other strains from Microbacterium schleiferi (4) | Type strain |
|---|---|---|
| 7378 | M. schleiferi Co 112, CO112, DSM 20606, IFO 15076, NBRC ... | |
| 100772 | M. schleiferi ST033241(HKI), | |
| 145655 | M. schleiferi CCUG 29151 | |
| 151104 | M. schleiferi CCUG 43282, CCM 4364 |
| @ref | Gram stain | Cell shape | Motility | |
|---|---|---|---|---|
| 122508 | positive | rod-shaped |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 8734 | CORYNEBACTERIUM AGAR (DSMZ Medium 53) | Medium recipe at MediaDive | Name: CORYNEBACTERIUM AGAR (DSMZ Medium 53) Composition: Agar 15.0 g/l Casein peptone 10.0 g/l NaCl 5.0 g/l Glucose 5.0 g/l Yeast extract 5.0 g/l Distilled water | ||
| 18442 | ISP 2 | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |||
| 18442 | ISP 7 | Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes | |||
| 18442 | ISP 6 | Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes | |||
| 18442 | ISP 5 | Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes | |||
| 18442 | ISP 4 | Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml | |||
| 18442 | ISP 3 | Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms: | |||
| 40353 | MEDIUM 3 - Columbia agar | Columbia agar (39.000 g);distilled water (1000.000 ml) | |||
| 122508 | CIP Medium 3 | Medium recipe at CIP |
| 122508 | Oxygen toleranceobligate aerobe |
| @ref | Murein short key | Type | |
|---|---|---|---|
| 8734 | B06 | B2ß {Gly} [L-Hsr] D-Glu(Hyg)-Gly-D-Orn |
| 67770 | Observationquinones: MK-11, MK-12 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 122508 | 16947 ChEBI | citrate | - | carbon source | |
| 68379 | 17634 ChEBI | D-glucose | - | fermentation | from API Coryne |
| 68379 | 16899 ChEBI | D-mannitol | - | fermentation | from API Coryne |
| 68379 | 16988 ChEBI | D-ribose | - | fermentation | from API Coryne |
| 68379 | 65327 ChEBI | D-xylose | - | fermentation | from API Coryne |
| 68379 | 4853 ChEBI | esculin | + | hydrolysis | from API Coryne |
| 122508 | 4853 ChEBI | esculin | + | hydrolysis | |
| 68379 | 5291 ChEBI | gelatin | - | hydrolysis | from API Coryne |
| 68379 | 28087 ChEBI | glycogen | - | fermentation | from API Coryne |
| 122508 | 606565 ChEBI | hippurate | + | hydrolysis | |
| 68379 | 17716 ChEBI | lactose | - | fermentation | from API Coryne |
| 68379 | 17306 ChEBI | maltose | - | fermentation | from API Coryne |
| 68379 | 17632 ChEBI | nitrate | - | reduction | from API Coryne |
| 122508 | 17632 ChEBI | nitrate | - | reduction | |
| 122508 | 17632 ChEBI | nitrate | - | respiration | |
| 122508 | 16301 ChEBI | nitrite | - | reduction | |
| 68379 | 17992 ChEBI | sucrose | - | fermentation | from API Coryne |
| 68379 | 16199 ChEBI | urea | - | hydrolysis | from API Coryne |
| @ref | Metabolite | Is sensitive | Is resistant | |
|---|---|---|---|---|
| 122508 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 122508 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | - | 3.1.3.1 | from API zym |
| 68379 | alkaline phosphatase | - | 3.1.3.1 | from API Coryne |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68379 | alpha-glucosidase | + | 3.2.1.20 | from API Coryne |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 122508 | amylase | - | ||
| 68382 | beta-galactosidase | + | 3.2.1.23 | from API zym |
| 122508 | beta-galactosidase | + | 3.2.1.23 | |
| 68379 | beta-galactosidase | + | 3.2.1.23 | from API Coryne |
| 68382 | beta-glucosidase | + | 3.2.1.21 | from API zym |
| 68379 | beta-glucosidase | + | 3.2.1.21 | from API Coryne |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 68379 | beta-glucuronidase | - | 3.2.1.31 | from API Coryne |
| 122508 | caseinase | - | 3.4.21.50 | |
| 122508 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 122508 | DNase | - | ||
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 122508 | gamma-glutamyltransferase | - | 2.3.2.2 | |
| 122508 | gelatinase | - | ||
| 68379 | gelatinase | - | from API Coryne | |
| 122508 | lecithinase | - | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 122508 | lipase | - | ||
| 68382 | lipase (C 14) | - | from API zym | |
| 122508 | lysine decarboxylase | - | 4.1.1.18 | |
| 68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API Coryne |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 122508 | ornithine decarboxylase | - | 4.1.1.17 | |
| 122508 | oxidase | - | ||
| 122508 | phenylalanine ammonia-lyase | - | 4.3.1.24 | |
| 122508 | protease | - | ||
| 68379 | pyrazinamidase | - | 3.5.1.B15 | from API Coryne |
| 68379 | pyrrolidonyl arylamidase | - | 3.4.19.3 | from API Coryne |
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 122508 | tryptophan deaminase | - | ||
| 122508 | tween esterase | - | ||
| 122508 | urease | - | 3.5.1.5 | |
| 68379 | urease | - | 3.5.1.5 | from API Coryne |
| 68382 | valine arylamidase | + | from API zym |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|
| 124043 | ASM3654318v1 assembly for Microbacterium schleiferi NBRC 15075 | scaffold | 69362 | 72.79 | |||
| 124043 | ASM3953398v1 assembly for Microbacterium schleiferi JCM 9175 | scaffold | 69362 | 70.76 |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Phylogeny | Isolation and characterization of polyhydroxyalkanoate-degrading bacteria in seawater at two different depths from Suruga Bay. | Hachisuka S-I, Sakurai T, Mizuno S, Kosuge K, Endo S, Ishii-Hyakutake M, Miyahara Y, Yamazaki M, Tsuge T. | Appl Environ Microbiol | 10.1128/aem.01488-23 | 2023 | |
| Marine sediments microbes degrade a limited repertoire of organic UV filters. | Fagervold SK, Rohee C, Lebaron P. | Environ Sci Pollut Res Int | 10.1007/s11356-025-36772-y | 2025 | ||
| A native bacterial consortium degrades estriol in domestic sewage and activated sludge via the 4,5-seco pathway and requires estriol to retain its biodegradation phenotype. | Hashem JS, Ismail W, Chiang Y-R, Sangal V, Hentati D, Abotalib N, Bekhit AA. | Microbiol Spectr | 10.1128/spectrum.00741-25 | 2025 | ||
| Diversity analysis of endophytes with antimicrobial and antioxidant potential from Viola odorata: an endemic plant species of the Himalayas. | Salwan R, Salwan R, Rana A, Saini R, Sharma A, Sharma M, Sharma V. | Braz J Microbiol | 10.1007/s42770-023-01010-5 | 2023 | ||
| Microbial consortia degrade several widely used organic UV filters, but a number of hydrophobic filters remain recalcitrant to biodegradation. | Fagervold SK, Rohee C, Lebaron P. | Environ Sci Pollut Res Int | 10.1007/s11356-023-31063-w | 2023 | ||
| The diversity of PAH-degrading bacteria in a deep-sea water column above the Southwest Indian Ridge. | Yuan J, Lai Q, Sun F, Zheng T, Shao Z. | Front Microbiol | 10.3389/fmicb.2015.00853 | 2015 | ||
| Isolation of cellulolytic bacteria from the intestine of Diatraea saccharalis larvae and evaluation of their capacity to degrade sugarcane biomass. | Dantur KI, Enrique R, Welin B, Castagnaro AP. | AMB Express | 10.1186/s13568-015-0101-z | 2015 | ||
| Isolation and Plant Growth Promotion Effect of Endophytic Siderophore-Producing Bacteria: A Study on Halophyte Sesuvium portulacastrum. | Cen X, Li H, Zhang Y, Huang L, Luo Y. | Plants (Basel) | 10.3390/plants13192703 | 2024 | ||
| Unlocking bioremediation potential for site restoration: A comprehensive approach for crude oil degradation in agricultural soil and phytotoxicity assessment. | Tripathi V, Gaur VK, Kaur I, Srivastava PK, Manickam N. | J Environ Manage | 10.1016/j.jenvman.2024.120508 | 2024 | ||
| Enzymology | Assessing the half-life and degradation kinetics of aliphatic and aromatic hydrocarbons by bacteria isolated from crude oil contaminated soil. | Tripathi V, Gaur VK, Thakur RS, Patel DK, Manickam N. | Chemosphere | 10.1016/j.chemosphere.2023.139264 | 2023 | |
| Impact of a biorepair treatment on the diversity of calcifying bacterial communities at the surface of cracked concrete walls. | Lors C, Gassie C, Guyoneaud R, Damidot D. | Appl Microbiol Biotechnol | 10.1007/s00253-022-12313-2 | 2023 | ||
| Arsenic Pollution and Anaerobic Arsenic Metabolizing Bacteria in Lake Van, the World's Largest Soda Lake. | Ersoy Omeroglu E, Sudagidan M, Ogun E. | Life (Basel) | 10.3390/life12111900 | 2022 | ||
| Environmental factors affecting the diversity of psychrophilic microbial community in the high altitude snow-fed lake Hemkund, India. | Gupta V, Chandran S, Deep A, Kumar R, Bisht L. | Curr Res Microb Sci | 10.1016/j.crmicr.2022.100126 | 2022 | ||
| Exploring Novel Fungal-Bacterial Consortia for Enhanced Petroleum Hydrocarbon Degradation. | Silva Monteiro JP, da Silva AF, Delgado Duarte RT, Jose Giachini A. | Toxics | 10.3390/toxics12120913 | 2024 | ||
| Metabolism | Intestinal microbiota as a tetrahydrobiopterin exogenous source in hph-1 mice. | Belik J, Shifrin Y, Arning E, Bottiglieri T, Pan J, Daigneault MC, Allen-Vercoe E. | Sci Rep | 10.1038/srep39854 | 2017 | |
| Systematic Review of Actinomycetes in the Baijiu Fermentation Microbiome. | Chen C, Yang H, Liu J, Luo H, Zou W. | Foods | 10.3390/foods11223551 | 2022 | ||
| High Prevalence of Quorum-Sensing and Quorum-Quenching Activity among Cultivable Bacteria and Metagenomic Sequences in the Mediterranean Sea. | Muras A, Lopez-Perez M, Mayer C, Parga A, Amaro-Blanco J, Otero A. | Genes (Basel) | 10.3390/genes9020100 | 2018 | ||
| Phenotypic and Genotypic Investigation of Two Representative Strains of Microbacterium Species Isolated From Micro-Filtered Milk: Growth Capacity and Spoilage-Potential Assessment. | Bellassi P, Cappa F, Fontana A, Morelli L. | Front Microbiol | 10.3389/fmicb.2020.554178 | 2020 | ||
| Microbial Diversity and Biochemical Analysis of Suanzhou: A Traditional Chinese Fermented Cereal Gruel. | Qin H, Sun Q, Pan X, Qiao Z, Yang H. | Front Microbiol | 10.3389/fmicb.2016.01311 | 2016 | ||
| The Cultured Microbiome of Pollinated Maize Silks Shifts after Infection with Fusarium graminearum and Varies by Distance from the Site of Pathogen Inoculation. | Thompson MEH, Shrestha A, Rinne J, Limay-Rios V, Reid L, Raizada MN. | Pathogens | 10.3390/pathogens12111322 | 2023 | ||
| Toward Elucidating the Human Gut Microbiota-Brain Axis: Molecules, Biochemistry, and Implications for Health and Diseases. | Lai Y, Dhingra R, Zhang Z, Ball LM, Zylka MJ, Lu K. | Biochemistry | 10.1021/acs.biochem.1c00656 | 2022 | ||
| Enzymology | Opportunistic pathogens and elements of the resistome that are common in bottled mineral water support the need for continuous surveillance. | Falcone-Dias MF, Centron D, Pavan F, Moura AC, Naveca FG, de Souza VC, Farache Filho A, Leite CQ. | PLoS One | 10.1371/journal.pone.0121284 | 2015 | |
| Bioaugmentation failed to enhance oil bioremediation in three soil samples from three different continents. | Radwan SS, Al-Mailem DM, Kansour MK. | Sci Rep | 10.1038/s41598-019-56099-2 | 2019 | ||
| Phylogeny | Union of the genera Microbacterium Orla-Jensen and Aureobacterium Collins et al. in a redefined genus Microbacterium. | Takeuchi M, Hatano K. | Int J Syst Bacteriol | 10.1099/00207713-48-3-739 | 1998 | |
| Microbial Monitoring in the EDEN ISS Greenhouse, a Mobile Test Facility in Antarctica. | Fahrion J, Fink C, Zabel P, Schubert D, Mysara M, Van Houdt R, Eikmanns B, Beblo-Vranesevic K, Rettberg P. | Front Microbiol | 10.3389/fmicb.2020.00525 | 2020 | ||
| Enzymology | Olive fruit fly rearing procedures affect the vertical transmission of the bacterial symbiont Candidatus Erwinia dacicola. | Sacchetti P, Pastorelli R, Bigiotti G, Guidi R, Ruschioni S, Viti C, Belcari A. | BMC Biotechnol | 10.1186/s12896-019-0582-y | 2019 | |
| Effect of shadowing on survival of bacteria under conditions simulating the Martian atmosphere and UV radiation. | Osman S, Peeters Z, La Duc MT, Mancinelli R, Ehrenfreund P, Venkateswaran K. | Appl Environ Microbiol | 10.1128/aem.01973-07 | 2008 | ||
| Deep sequencing approach for investigating infectious agents causing fever. | Susilawati TN, Jex AR, Cantacessi C, Pearson M, Navarro S, Susianto A, Loukas AC, McBride WJ. | Eur J Clin Microbiol Infect Dis | 10.1007/s10096-016-2644-6 | 2016 | ||
| Metabolism | Enzymatic degradation of granular potato starch by Microbacterium aurum strain B8.A. | Sarian FD, van der Kaaij RM, Kralj S, Wijbenga DJ, Binnema DJ, van der Maarel MJ, Dijkhuizen L. | Appl Microbiol Biotechnol | 10.1007/s00253-011-3436-7 | 2012 | |
| Metabolism | Bacteria mediate methylation of iodine in marine and terrestrial environments. | Amachi S, Kamagata Y, Kanagawa T, Muramatsu Y. | Appl Environ Microbiol | 10.1128/aem.67.6.2718-2722.2001 | 2001 | |
| Phylogeny | Proposal of six new species in the genus Aureobacterium and transfer of Flavobacterium esteraromaticum Omelianski to the genus Aureobacterium as Aureobacterium esteraromaticum comb. nov. | Yokota A, Takeuchi M, Sakane T, Weiss N | Int J Syst Bacteriol | 10.1099/00207713-43-3-555 | 1993 | |
| Microbacterium abyssi sp. nov. and Microbacterium limosum sp. nov., two new species of the genus Microbacterium, isolated from deep-sea sediment samples. | Ding Y, Ding X, Chen Y, Wei S, Zhang G. | Int J Syst Evol Microbiol | 10.1099/ijsem.0.006299 | 2024 | ||
| Phylogeny | Microbacterium deminutum sp. nov., Microbacterium pumilum sp. nov. and Microbacterium aoyamense sp. nov. | Kageyama A, Takahashi Y, Omura S. | Int J Syst Evol Microbiol | 10.1099/ijs.0.64236-0 | 2006 |
| #8734 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20489 |
| #18442 | Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig . |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #40353 | ; Curators of the CIP; |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68379 | Automatically annotated from API Coryne . |
| #68382 | Automatically annotated from API zym . |
| #122508 | Collection of Institut Pasteur ; Curators of the CIP; CIP 102087 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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