Microbacterium luteolum 69 is an obligate aerobe, Gram-positive, rod-shaped bacterium that was isolated from soil.
Gram-positive rod-shaped obligate aerobe genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Micrococcales |
| Family Microbacteriaceae |
| Genus Microbacterium |
| Species Microbacterium luteolum |
| Full scientific name Microbacterium luteolum (Yokota et al. 1993) Takeuchi and Hatano 1998 |
| Synonyms (1) |
| BacDive ID | Other strains from Microbacterium luteolum (2) | Type strain |
|---|---|---|
| 100771 | M. luteolum ST033240(HKI), | |
| 151103 | M. luteolum CCUG 43281, CCM 4365 |
| @ref | Gram stain | Cell shape | Motility | |
|---|---|---|---|---|
| 120693 | positive | rod-shaped |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 8567 | CORYNEBACTERIUM AGAR (DSMZ Medium 53) | Medium recipe at MediaDive | Name: CORYNEBACTERIUM AGAR (DSMZ Medium 53) Composition: Agar 15.0 g/l Casein peptone 10.0 g/l NaCl 5.0 g/l Glucose 5.0 g/l Yeast extract 5.0 g/l Distilled water | ||
| 18424 | ISP 2 | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |||
| 18424 | ISP 3 | Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms: | |||
| 18424 | ISP 4 | Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml | |||
| 18424 | ISP 5 | Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes | |||
| 18424 | ISP 6 | Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes | |||
| 18424 | ISP 7 | Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes | |||
| 40319 | MEDIUM 3 - Columbia agar | Columbia agar (39.000 g);distilled water (1000.000 ml) | |||
| 120693 | CIP Medium 3 | Medium recipe at CIP |
| 120693 | Oxygen toleranceobligate aerobe |
| @ref | Murein short key | Type | |
|---|---|---|---|
| 8567 | B06 | B2ß {Gly} [L-Hsr] D-Glu(Hyg)-Gly-D-Orn |
| 67770 | Observationquinones: MK-12, MK-11, MK-13 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 120693 | 16947 ChEBI | citrate | - | carbon source | |
| 68379 | 17634 ChEBI | D-glucose | - | fermentation | from API Coryne |
| 68379 | 16899 ChEBI | D-mannitol | - | fermentation | from API Coryne |
| 68379 | 16988 ChEBI | D-ribose | - | fermentation | from API Coryne |
| 68379 | 65327 ChEBI | D-xylose | - | fermentation | from API Coryne |
| 68379 | 4853 ChEBI | esculin | + | hydrolysis | from API Coryne |
| 120693 | 4853 ChEBI | esculin | + | hydrolysis | |
| 68379 | 5291 ChEBI | gelatin | + | hydrolysis | from API Coryne |
| 68379 | 28087 ChEBI | glycogen | - | fermentation | from API Coryne |
| 120693 | 606565 ChEBI | hippurate | + | hydrolysis | |
| 68379 | 17716 ChEBI | lactose | - | fermentation | from API Coryne |
| 68379 | 17306 ChEBI | maltose | - | fermentation | from API Coryne |
| 120693 | 17632 ChEBI | nitrate | - | reduction | |
| 120693 | 17632 ChEBI | nitrate | - | respiration | |
| 68379 | 17632 ChEBI | nitrate | - | reduction | from API Coryne |
| 120693 | 16301 ChEBI | nitrite | - | reduction | |
| 68379 | 17992 ChEBI | sucrose | - | fermentation | from API Coryne |
| 68379 | 16199 ChEBI | urea | + | hydrolysis | from API Coryne |
| @ref | Metabolite | Is sensitive | Is resistant | |
|---|---|---|---|---|
| 120693 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 120693 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68379 | alkaline phosphatase | - | 3.1.3.1 | from API Coryne |
| 68382 | alkaline phosphatase | - | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68379 | alpha-glucosidase | + | 3.2.1.20 | from API Coryne |
| 68382 | alpha-mannosidase | + | 3.2.1.24 | from API zym |
| 120693 | amylase | - | ||
| 68382 | beta-galactosidase | + | 3.2.1.23 | from API zym |
| 120693 | beta-galactosidase | + | 3.2.1.23 | |
| 68379 | beta-galactosidase | + | 3.2.1.23 | from API Coryne |
| 68382 | beta-glucosidase | + | 3.2.1.21 | from API zym |
| 68379 | beta-glucosidase | + | 3.2.1.21 | from API Coryne |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 68379 | beta-glucuronidase | - | 3.2.1.31 | from API Coryne |
| 120693 | caseinase | + | 3.4.21.50 | |
| 120693 | catalase | + | 1.11.1.6 | |
| 120693 | DNase | + | ||
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 120693 | gamma-glutamyltransferase | - | 2.3.2.2 | |
| 120693 | gelatinase | +/- | ||
| 68379 | gelatinase | + | from API Coryne | |
| 120693 | lecithinase | - | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 120693 | lipase | - | ||
| 68382 | lipase (C 14) | - | from API zym | |
| 120693 | lysine decarboxylase | - | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API Coryne |
| 120693 | ornithine decarboxylase | - | 4.1.1.17 | |
| 120693 | oxidase | - | ||
| 120693 | phenylalanine ammonia-lyase | - | 4.3.1.24 | |
| 120693 | protease | - | ||
| 68379 | pyrazinamidase | - | 3.5.1.B15 | from API Coryne |
| 68379 | pyrrolidonyl arylamidase | - | 3.4.19.3 | from API Coryne |
| 120693 | tryptophan deaminase | - | ||
| 120693 | tween esterase | - | ||
| 120693 | urease | - | 3.5.1.5 | |
| 68379 | urease | + | 3.5.1.5 | from API Coryne |
| 68382 | valine arylamidase | + | from API zym |
| @ref | Description | Assembly level | INSDC accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|
| 124043 | ASM3953396v1 assembly for Microbacterium luteolum JCM 9174 | contig | 69367 | 75.48 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Microbacterium luteolum 16S rRNA gene | Y17235 | 1462 | 69367 | ||
| 20218 | Microbacterium luteolum gene for 16S rRNA, partial sequence | AB004718 | 1440 | 69367 | ||
| 124043 | Microbacterium luteolum strain IFO 15074(T) 16S ribosomal RNA gene, partial sequence. | MN687836 | 473 | 69367 | ||
| 124043 | Microbacterium luteolum strain IFO 15074 16S ribosomal RNA gene, partial sequence. | MW111248 | 649 | 69367 |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Phylogeny | Identification of a bacterial strain isolated from the liver of a laboratory mouse as Microbacterium paraoxydans and emended description of the species Microbacterium paraoxydans Laffineur et al 2003. | Buczolits S, Schumann P, Valens M, Rossello-Mora R, Busse HJ. | Indian J Microbiol | 10.1007/s12088-008-0035-0 | 2008 | |
| Complete genome sequence of Paenibacillus sp. strain JDR-2. | Chow V, Nong G, St John FJ, Rice JD, Dickstein E, Chertkov O, Bruce D, Detter C, Brettin T, Han J, Woyke T, Pitluck S, Nolan M, Pati A, Martin J, Copeland A, Land ML, Goodwin L, Jones JB, Ingram LO, Shanmugam KT, Preston JF. | Stand Genomic Sci | 10.4056/sigs.2374349 | 2012 | ||
| Screening of Endophytic Bacteria of Leucojum aestivum 'Gravety Giant' as a Potential Source of Alkaloids and as Antagonist to Some Plant Fungal Pathogens. | Munakata Y, Spina R, Slezack-Deschaumes S, Genestier J, Hehn A, Laurain-Mattar D. | Microorganisms | 10.3390/microorganisms10102089 | 2022 | ||
| Metabolism | Coenzyme precursor-assisted cooperative overexpression of an active pyridoxine 4-oxidase from Microbacterium luteolum. | Yoshikane Y, Yokochi N, Ohnishi K, Yagi T. | Protein Expr Purif | 10.1016/j.pep.2003.11.013 | 2004 | |
| The effect of dietary krill supplementation on epithelium-associated bacteria in the hindgut of Atlantic salmon (Salmo salar L.): a microbial and electron microscopical study | Ringo E, Sperstad S, Myklebust R, Mayhew TM, Mjelde A, Melle W, Olsen RE, Olsen RE. | Aquac Res | 10.1111/j.1365-2109.2006.01611.x | 2006 | ||
| Enzymology | Purification, molecular cloning, and characterization of pyridoxine 4-oxidase from Microbacterium luteolum. | Kaneda Y, Ohnishi K, Yagi T. | Biosci Biotechnol Biochem | 10.1271/bbb.66.1022 | 2002 | |
| Metabolism | Crystallization and preliminary X-ray analysis of pyridoxal 4-dehydrogenase, the second enzyme in degradation pathway I of pyridoxine. | Yokochi N, Yoshikane Y, Yagi T, Yamasaki M, Mikami B. | Acta Crystallogr D Biol Crystallogr | 10.1107/s0907444904021754 | 2004 | |
| Phylogeny | Reclassification of Brevibacterium oxydans (Chatelain and Second 1966) as Microbacterium oxydans comb. nov. | Schumann P, Rainey FA, Burghardt J, Stackebrandt E, Weiss N. | Int J Syst Bacteriol | 10.1099/00207713-49-1-175 | 1999 | |
| Enzymology | Crystallization and preliminary X-ray analysis of pyridoxine 4-oxidase, the first enzyme in pyridoxine degradation pathway I. | Mugo AN, Kobayashi J, Mikami B, Ohnishi K, Yagi T. | Acta Crystallogr Sect F Struct Biol Cryst Commun | 10.1107/s1744309111048688 | 2012 | |
| Phylogeny | Union of the genera Microbacterium Orla-Jensen and Aureobacterium Collins et al. in a redefined genus Microbacterium. | Takeuchi M, Hatano K. | Int J Syst Bacteriol | 10.1099/00207713-48-3-739 | 1998 | |
| Enzymology | Cold-active extracellular lipase: Expression in Sf9 insect cells, purification, and catalysis. | Li T, Zhang W, Hao J, Sun M, Lin SX. | Biotechnol Rep (Amst) | 10.1016/j.btre.2018.e00295 | 2019 | |
| Antibacterial Activity of Endophytic Actinomycetes Isolated from the Medicinal Plant Vochysia divergens (Pantanal, Brazil). | Gos FMWR, Savi DC, Shaaban KA, Thorson JS, Aluizio R, Possiede YM, Rohr J, Glienke C. | Front Microbiol | 10.3389/fmicb.2017.01642 | 2017 | ||
| Metabolism | A stepwise approach for the reproducible optimization of PAMO expression in Escherichia coli for whole-cell biocatalysis. | van Bloois E, Dudek HM, Duetz WA, Fraaije MW. | BMC Biotechnol | 10.1186/1472-6750-12-31 | 2012 | |
| Genetics | Complete genome sequence of Microbacterium strain A8/3-1 isolated from the root nodule of Oxytropis tragacanthoides, growing in the Altai region. | Guro P, Sazanova A, Belimov A, Karlov D, Kuznetsova I, Safronova V. | Microbiol Resour Announc | 10.1128/mra.00817-24 | 2024 | |
| Enzymology | Gene cloning and characterization of two NADH-dependent 3-quinuclidinone reductases from Microbacterium luteolum JCM 9174. | Isotani K, Kurokawa J, Suzuki F, Nomoto S, Negishi T, Matsuda M, Itoh N | Appl Environ Microbiol | 10.1128/AEM.03099-12 | 2012 | |
| Enzymology | Production of (R)-3-quinuclidinol by E. coli biocatalysts possessing NADH-dependent 3-quinuclidinone reductase (QNR or bacC) from Microbacterium luteolum and Leifsonia alcohol dehydrogenase (LSADH). | Isotani K, Kurokawa J, Itoh N | Int J Mol Sci | 10.3390/ijms131013542 | 2012 | |
| Enzymology | Gene cloning and characterization of dihydrolipoamide dehydrogenase from Microbacterium luteolum: A useful enzymatic regeneration system of NAD+ from NADH. | Kurokawa J, Asano M, Nomoto S, Makino Y, Itoh N | J Biosci Bioeng | 10.1016/j.jbiosc.2009.09.040 | 2010 | |
| Phylogeny | Proposal of six new species in the genus Aureobacterium and transfer of Flavobacterium esteraromaticum Omelianski to the genus Aureobacterium as Aureobacterium esteraromaticum comb. nov. | Yokota A, Takeuchi M, Sakane T, Weiss N | Int J Syst Bacteriol | 10.1099/00207713-43-3-555 | 1993 | |
| Phylogeny | Microbacterium oleivorans sp. nov. and Microbacterium hydrocarbonoxydans sp. nov., novel crude-oil-degrading Gram-positive bacteria. | Schippers A, Bosecker K, Sproer C, Schumann P | Int J Syst Evol Microbiol | 10.1099/ijs.0.63305-0 | 2005 |
| #8567 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20143 |
| #18424 | Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig . |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #40319 | ; Curators of the CIP; |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68379 | Automatically annotated from API Coryne . |
| #68382 | Automatically annotated from API zym . |
| #120693 | Collection of Institut Pasteur ; Curators of the CIP; CIP 102086 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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