Microbacterium arborescens (DSM 20754, ATCC 4358, IFO 3750)

Name: Microbacterium arborescens (DSM 20754, ATCC 4358, IFO 3750)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7370

Type strain

Culture col. no. DSM 20754 ATCC 4358 IFO 3750 NBRC 3750 NRRL B-24239 10 more

NCBI tax ID(s) 33883

Special Collections DSMZ JCM KCTC CIP Wink compendium

History <- ATCC <- A. Stewart (Flavobacterium arborescens) IFO 3750 <-- ATCC 4358 <-- A. Stewart; Florida State Coll. for Women, USA. CIP <- 1955, NCIB <- A. Stewart, Flavobacterium arborescens

Links

Microbacterium arborescens DSM 20754 is an obligate aerobe, mesophilic, Gram-positive prokaryote of the family Microbacteriaceae.

Gram-positive motile rod-shaped obligate aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 13722

LMG 4009,ATCC 4358,IFO 3750,NCDO 2276,NCIB 8185,DSM 20754,JCM 5884,NCIMB 8185,VKM Ac-2074,VKM Ac-1944,CIP 55.81,KCTC 3522,NBRC 3750,HAMBI 1892,IAM 1311,NRRL B-24239,CGMCC 1.1937,ATCC 4385

@ref 20215

Last LPSN update 2025-12-16 09:48:34

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Microbacteriaceae

Genus Microbacterium

Species Microbacterium arborescens

Full scientific name Microbacterium arborescens (ex Frankland and Frankland 1889) Imai et al. 1985

BacDive ID	Other strains from **Microbacterium arborescens** (4)	Type strain
139142	M. arborescens CIP 100538
139201	M. arborescens 839-84, CIP 101307
145541	M. arborescens CCUG 28797
155093	M. arborescens CCUG 56456

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
116472	positive	rod-shaped

Colony morphology

@ref	Colony color	Incubation period	Medium used
18772	Beige	10-14 days	ISP 2
18772	Deep orange	10-14 days	ISP 3
18772	Saffron yellow	10-14 days	ISP 4
18772		10-14 days	ISP 5
18772	Golden yellow	10-14 days	ISP 6
18772		10-14 days	ISP 7
116472

Multicellular morphology

@ref	Forms multicellular complex	Medium name
18772		ISP 2
18772		ISP 3
18772		ISP 4
18772		ISP 5
18772		ISP 6
18772		ISP 7

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
9061	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
18772	ISP 2		Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
18772	ISP 3		Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
18772	ISP 4		Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
18772	ISP 5		Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
18772	ISP 6		Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
18772	ISP 7		Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
37359	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
116472	CIP Medium 3	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
9061	positive	growth	30	mesophilic
18772	positive	optimum	28	mesophilic
37359	positive	growth	30	mesophilic
67770	positive	growth	30	mesophilic
116472	positive	growth	10-41
116472	negative	growth	45

Physiology and metabolism

Oxygen tolerance

116472

Oxygen toleranceobligate aerobe

Spore formation

@ref	Spore formation	Confidence
125439		97.3

Compound production

@ref	Compound
9061	flavin-adenine dinucleotide
20216	Flavin-adenine dinucleotide

Halophily

@ref	Salt	Growth	Tested relation	Concentration
18772	NaCl	positive	maximum	5 %
116472	NaCl	positive	growth	0-6 %
116472	NaCl		growth	8 %
116472	NaCl		growth	10 %

Murein

@ref	Murein short key	Type
9061	B02	B1ß {Gly} [L-Hsr] D-Glu(Hyg)-Gly₂-L-Lys

Observation

67770

Observationquinones: MK-11, MK-12

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
116472	16947 ChEBI	citrate	+	carbon source
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	+	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	+	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68379	4853 ChEBI	esculin	+	hydrolysis	from API Coryne
116472	4853 ChEBI	esculin	+	hydrolysis
68379	5291 ChEBI	gelatin	+	hydrolysis	from API Coryne
68368	5291 ChEBI	gelatin	+	hydrolysis	from API 20E
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
116472	606565 ChEBI	hippurate	+	hydrolysis
68379	17716 ChEBI	lactose	+	fermentation	from API Coryne
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68379	17306 ChEBI	maltose	+	fermentation	from API Coryne
68379	17632 ChEBI	nitrate	+	reduction	from API Coryne
116472	17632 ChEBI	nitrate	-	reduction
116472	17632 ChEBI	nitrate	-	respiration
116472	16301 ChEBI	nitrite	-	reduction
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68379	16199 ChEBI	urea	+	hydrolysis	from API Coryne
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
116472	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
116472	35581 ChEBI	indole
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test	Indole test
116472	15688 ChEBI	acetoin	-
68368	15688 ChEBI	acetoin	+			from API 20E
116472	17234 ChEBI	glucose		+
68368	35581 ChEBI	indole			-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
116472	alcohol dehydrogenase	-	1.1.1.1
68379	alkaline phosphatase	-	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68379	alpha-glucosidase	+	3.2.1.20	from API Coryne
68382	alpha-mannosidase	+	3.2.1.24	from API zym
116472	amylase	-
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68382	beta-galactosidase	+	3.2.1.23	from API zym
116472	beta-galactosidase	+	3.2.1.23
68379	beta-galactosidase	+	3.2.1.23	from API Coryne
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68382	beta-glucosidase	+	3.2.1.21	from API zym
68379	beta-glucosidase	+	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	+	3.2.1.31	from API Coryne
116472	caseinase	+	3.4.21.50
116472	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
116472	DNase	+
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
116472	gamma-glutamyltransferase	-	2.3.2.2
116472	gelatinase	+
68379	gelatinase	+		from API Coryne
68368	gelatinase	+		from API 20E
116472	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
116472	lipase	-
68382	lipase (C 14)	-		from API zym
116472	lysine decarboxylase	-	4.1.1.18
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
116472	ornithine decarboxylase	-	4.1.1.17
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
116472	oxidase	-
116472	phenylalanine ammonia-lyase	+	4.3.1.24
116472	protease	+
68379	pyrazinamidase	+	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	+	3.4.19.3	from API Coryne
68382	trypsin	+	3.4.21.4	from API zym
116472	tryptophan deaminase	-
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
116472	tween esterase	-
116472	urease	-	3.5.1.5
68379	urease	+	3.5.1.5	from API Coryne
68368	urease	-	3.5.1.5	from API 20E
68382	valine arylamidase	+		from API zym

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
18772	+	-	-	-	-	-	-	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
18772	+	+	+	-	+	+	+	+	+	+	+	not determinedn.d.	-	+	-	+	+	+	-	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
18772	not determinedn.d.	-	+	+	-	+	+	+	+	+	+	+	-	+	-	+	+	+	+	-
116472	-	+	+	+	-	+	+	+	+	+	+	+	+	+	-	+	+	+	+	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
116472	not determinedn.d.	+	+	+	+	+	-	-	+	-	+	+	+	+	-	-	+	+	+	+	-	+	+	+	+	-	+	-	-	-	-	-	+	-	+	+	+	-	+	-	-	-	-	-	-	-	-	-	-	+	+	+	+	-	+	-	-	+	+	+	+	+	-	-	-	-	-	-	-	-	-	-	-	+	+	-	+	-	-	-	+	+	-	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Taxonmaps

69479

Global distribution of 16S sequence X77443 (>99% sequence identity) for Microbacterium from Microbeatlas

Aquatic Samples	131
Soil Samples	345
Animal Samples	721
Plant Samples	38
Total Samples	1235

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
9061	1	Risk group (German classification) According to TRBA 466
18772	1	Risk group (German classification) According to TRBA 466
116472	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM333964v1 assembly for Microbacterium arborescens DSM 20754	scaffold	GCA_003339645	33883.6	2877034298	33883	29.43

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Microbacterium arborescens gene for 16S rRNA, partial sequence	AB007421	1440	33883
20218	Microbacterium arborescens 16S rRNA gene	D21339	1334	33883
9061	M.arborescens (DSM 20754) 16S rRNA gene	X77443	1468	33883
124043	Microbacterium arborescens strain DSM 20754 16S ribosomal RNA gene, partial sequence.	MN526991	467	33883

GC content

@ref	GC-content (mol%)	Method
9061	71.0
67770	71	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Microbacterium arborescens DSM 20754
NCBI: GCA_003339645

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.30	no
125439	motility	BacteriaNetⓘ	yes	78.20	no
125439	gram_stain	BacteriaNetⓘ	negative	86.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	85.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Microbacterium arborescens strain DSM 20754
PATRIC: 33883.6

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	88.17	no
125438	anaerobic	anaerobicⓘ	no	96.86	yes
125438	spore-forming	spore-formingⓘ	no	72.85	no
125438	aerobic	aerobicⓘ	yes	80.16	no
125438	thermophilic	thermophileⓘ	no	93.43	yes
125438	flagellated	motile2+ⓘ	no	79.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Occurrence of disinfectant-resistant bacteria in a fresh-cut vegetables processing facility and their role in protecting Salmonella enteritidis.	Xu JG, Meng J, Bao WJ, Kang JM, Chen JY, Han BZ.	RSC Adv	10.1039/d0ra09325d	2021
Metabolism	Diversity and functional significance of cellulolytic microbes living in termite, pill-bug and stem-borer guts.	Bashir Z, Kondapalli VK, Adlakha N, Sharma A, Bhatnagar RK, Chandel G, Yazdani SS.	Sci Rep	10.1038/srep02558	2013
Biotechnology	Identification and quantification of Bifidobacterium species isolated from food with genus-specific 16S rRNA-targeted probes by colony hybridization and PCR.	Kaufmann P, Pfefferkorn A, Teuber M, Meile L.	Appl Environ Microbiol	10.1128/aem.63.4.1268-1273.1997	1997
Phylogeny	Isolation and characterization of endophytic colonizing bacteria from agronomic crops and prairie plants.	Zinniel DK, Lambrecht P, Harris NB, Feng Z, Kuczmarski D, Higley P, Ishimaru CA, Arunakumari A, Barletta RG, Vidaver AK.	Appl Environ Microbiol	10.1128/aem.68.5.2198-2208.2002	2002
Phylogeny	Web-based phylogenetic assignment tool for analysis of terminal restriction fragment length polymorphism profiles of microbial communities.	Kent AD, Smith DJ, Benson BJ, Triplett EW.	Appl Environ Microbiol	10.1128/aem.69.11.6768-6776.2003	2003
	beta-Lytic Protease of Lysobacter capsici VKM B-2533^T.	Afoshin AS, Konstantinov MA, Toropygin IY, Kudryakova IV, Vasilyeva NV.	Antibiotics (Basel)	10.3390/antibiotics9110744	2020
	Update of the list of qualified presumption of safety (QPS) recommended microbiological agents intentionally added to food or feed as notified to EFSA 20: Suitability of taxonomic units notified to EFSA until March 2024.	EFSA Panel on Biological Hazards (BIOHAZ), Koutsoumanis K, Allende A, Alvarez-Ordonez A, Bolton D, Bover-Cid S, Chemaly M, De Cesare A, Hilbert F, Lindqvist R, Nauta M, Nonno R, Peixe L, Ru G, Simmons M, Skandamis P, Suffredini E, Cocconcelli PS, Fernandez Escamez PS, Maradona MP, Querol A, Sijtsma L, Suarez JE, Sundh I, Botteon A, Fulvio B, Correia S, Herman L.	EFSA J	10.2903/j.efsa.2024.8882	2024
	Growth enhancement and changes in bacterial microbiome of cucumber plants exhibited by biopriming with some native bacteria.	Botlagunta N, Babu S.	Saudi J Biol Sci	10.1016/j.sjbs.2024.103997	2024
Genetics	Metagenomic and Metabolomic Analyses Reveal the Role of Gut Microbiome-Associated Metabolites in the Muscle Elasticity of the Large Yellow Croaker (Larimichthys crocea).	Cheng Z, Huang H, Qiao G, Wang Y, Wang X, Yue Y, Gao Q, Peng S.	Animals (Basel)	10.3390/ani14182690	2024
Enzymology	Molecular characterization and antioxidant assay of pigment producing bacteria, Sphingomonas paucimobilis and Microbacterium arborescens isolated from fresh water sediments.	Jayaraman JD, Sigamani S, Arul D, Nedunchelizan K, Pachiappan P, Ramamurthy D.	Nat Prod Res	10.1080/14786419.2018.1553171	2020
	Xenobiotic resistance in mosquito eggs: current understanding and data gaps	Turaga U, Peper S, Garcia C, Presley S.	PeerJ		2025
Phylogeny	Isolation and characterization of endophytic bacteria from tomato foliage and their in vitro efficacy against root-knot nematodes.	Basumatary B, Das D, Choudhury BN, Dutta P, Bhattacharyya A.	J Nematol	10.21307/jofnem-2021-104	2021
Pathogenicity	The anti-staphylococcal lipolanthines are ribosomally synthesized lipopeptides.	Wiebach V, Mainz A, Siegert MJ, Jungmann NA, Lesquame G, Tirat S, Dreux-Zigha A, Aszodi J, Le Beller D, Sussmuth RD.	Nat Chem Biol	10.1038/s41589-018-0068-6	2018
	Quorum sensing in biofilm-mediated heavy metal resistance and transformation: environmental perspectives and bioremediation.	Mondal S, Melzi A, Zecchin S, Cavalca L.	Front Microbiol	10.3389/fmicb.2025.1607370	2025
	Deoxyshikonin: a promising lead drug grass against drug resistance or sensitivity to Helicobacter pylori in an acidic environment.	Xu J-y, Dong H-h, Liao L-j, Yang S-x, Wang L-y, Chen H, Luo P, Huang L, Guan A-x, Huang Y-Q.	Antimicrob Agents Chemother	10.1128/aac.00959-24	2024
	Microbiological Safety of Cut Melons Sold in Portuguese Retail Markets: A Pilot Study.	Tseng YH, Barbosa J, de Carvalho TB, Teixeira P.	Foods	10.3390/foods11244010	2022
	The use of phosphate rock and plant growth promoting microorganisms for the management of Urochloa decumbens (Stapf.) R.D. Webster in acidic soils.	Barbosa A, Reyes I, Valery A, Chacon Labrador C, Martinez O, Alonso MF.	PeerJ	10.7717/peerj.18610	2024
Biotechnology	Harnessing the bioremediation potential of indigenous Pseudomonas stutzeri for textile effluent treatment: a mechanistic insight.	Bhayana T, Gupta S, Dubey AK.	Sci Rep	10.1038/s41598-025-23952-6	2025
	Polyethyleneimine-grafted collagen fiber as a carrier for cell immobilization.	Zhu D, Li X, Liao X, Shi B.	J Ind Microbiol Biotechnol	10.1007/s10295-014-1566-5	2015
	Efficacy of Organic Peroxyacids for Eliminating Biofilm Preformed by Microorganisms Isolated from Dairy Processing Plants.	Goetz C, Larouche J, Velez Aristizabal M, Niboucha N, Jean J.	Appl Environ Microbiol	10.1128/aem.01889-21	2022
	Pathogenicity of bacteria isolated from gut of Spodoptera litura (Lepidoptera: Noctuidae) and fitness costs of insect associated with consumption of bacteria.	Thakur A, Dhammi P, Saini HS, Kaur S.	J Invertebr Pathol	10.1016/j.jip.2015.02.007	2015
Metabolism	Enhanced degradation of textile effluent in constructed wetland system using Typha domingensis and textile effluent-degrading endophytic bacteria.	Shehzadi M, Afzal M, Khan MU, Islam E, Mobin A, Anwar S, Khan QM.	Water Res	10.1016/j.watres.2014.03.064	2014
Genetics	Metagenomic and genomic analysis of heavy metal-tolerant and -resistant bacteria in resource islands in a semi-arid zone of the Colombian Caribbean.	Herrera-Calderon AC, Leal L, Suarez-Bautista JD, Manotas-Viloria HS, Munoz-Garcia A, Franco D, Arenas NE, Vanegas J.	Environ Sci Pollut Res Int	10.1007/s11356-023-30253-w	2024
Genetics	A host shift as the origin of tomato bacterial canker caused by Clavibacter michiganensis.	Yanez-Olvera AG, Gomez-Diaz AG, Selem-Mojica N, Rodriguez-Orduna L, Lara-Avila JP, Varni V, Alcoba F, Croce V, Legros T, Torres A, Torres Ruiz A, Tarrats F, Vermunt A, Looije T, Cibrian-Jaramillo A, Valenzuela M, Siri MI, Barona-Gomez F.	Microb Genom	10.1099/mgen.0.001309	2024
Enzymology	Bacteria isolated from field cases of equine amnionitis and fetal loss.	Todhunter KH, Muscatello G, Blishen AJ, Chicken C, Perkins NR, Gilkerson JR, Begg AP.	Aust Vet J	10.1111/avj.12022	2013
Metabolism	Sand aggregation by exopolysaccharide-producing Microbacterium arborescens--AGSB.	Godinho AL, Bhosle S.	Curr Microbiol	10.1007/s00284-009-9400-4	2009
	Gut microbial diversity and function analysis of the final-instar larvae of Protohermes xanthodes (Megaloptera: Corydalidae).	Shen Z, Cao C, Xia X.	J Insect Sci	10.1093/jisesa/iead065	2023
	Preliminary exploratory research on the application value of oral and intestinal meta-genomics in predicting subjects' occupations-A case study of the distinction between students and migrant workers.	Dou S, Ma G, Liang Y, Fu G, Shen J, Fu L, Wang Q, Li T, Cong B, Li S.	Front Microbiol	10.3389/fmicb.2023.1330603	2023
Phylogeny	Comparative analysis of Spodoptera frugiperda (J. E. Smith) (Lepidoptera, Noctuidae) corn and rice strains microbiota revealed minor changes across life cycle and strain endosymbiont association.	Marulanda-Moreno SM, Saldamando-Benjumea CI, Vivero Gomez R, Cadavid-Restrepo G, Moreno-Herrera CX.	PeerJ	10.7717/peerj.17087	2024
	Susceptibility of Elizabethkingia spp. to commonly tested and novel antibiotics and concordance between broth microdilution and automated testing methods.	Kuo SC, Tan MC, Huang WC, Wu HC, Chen FJ, Liao YC, Wang HY, Shiau YR, Lauderdale TL.	J Antimicrob Chemother	10.1093/jac/dkaa499	2021
	Comparison of MALDI TOF with conventional identification of clinically relevant bacteria.	Risch M, Radjenovic D, Han JN, Wydler M, Nydegger U, Risch L.	Swiss Med Wkly	10.4414/smw.2010.13095	2010
	Microbial consortium with nitrogen fixing and mineral solubilizing attributes for growth of barley (Hordeum vulgare L.).	Kaur T, Devi R, Kumar S, Sheikh I, Kour D, Yadav AN.	Heliyon	10.1016/j.heliyon.2022.e09326	2022
	Synthesis of Ribosomally Synthesized and Post-Translationally Modified Peptides Containing C-C Cross-Links.	Laws D, Plouch EV, Blakey SB.	J Nat Prod	10.1021/acs.jnatprod.2c00508	2022
Metabolism	A novel Dps-type protein from insect gut bacteria catalyses hydrolysis and synthesis of N-acyl amino acids.	Ping L, Buchler R, Mithofer A, Svatos A, Spiteller D, Dettner K, Gmeiner S, Piel J, Schlott B, Boland W.	Environ Microbiol	10.1111/j.1462-2920.2007.01279.x	2007
	Beneficial Microorganisms Improve Agricultural Sustainability under Climatic Extremes.	Jalal A, Oliveira CEDS, Rosa PAL, Galindo FS, Teixeira Filho MCM.	Life (Basel)	10.3390/life13051102	2023
	Studies on Siderophore and Pigment Produced by an Adhered Bacterial Strain Halobacillus trueperi MXM-16 from the Mangrove Ecosystem of Goa, India.	Kharangate-Lad A, Bhosle S.	Indian J Microbiol	10.1007/s12088-016-0591-7	2016
Genetics	Coevolution of aah: a dps-like gene with the host bacterium revealed by comparative genomic analysis.	Ping L, Platzer M, Wen G, Delaroque N.	ScientificWorldJournal	10.1100/2012/504905	2012
Phylogeny	Characterization of bacterial diversity in pulque, a traditional Mexican alcoholic fermented beverage, as determined by 16S rDNA analysis.	Escalante A, Rodriguez ME, Martinez A, Lopez-Munguia A, Bolivar F, Gosset G.	FEMS Microbiol Lett	10.1016/j.femsle.2004.04.045	2004
Enzymology	The wasted chewing gum bacteriome.	Satari L, Guillen A, Vidal-Verdu A, Porcar M.	Sci Rep	10.1038/s41598-020-73913-4	2020
Genetics	Novel Cesium Resistance Mechanism of Alkaliphilic Bacterium Isolated From Jumping Spider Ground Extract.	Koretsune T, Ishida Y, Kaneda Y, Ishiuchi E, Teshima M, Marubashi N, Satoh K, Ito M.	Front Microbiol	10.3389/fmicb.2022.841821	2022
Phylogeny	Trifolium repens-Associated Bacteria as a Potential Tool to Facilitate Phytostabilization of Zinc and Lead Polluted Waste Heaps.	Olenska E, Imperato V, Malek W, Wlostowski T, Wojcik M, Swiecicka I, Vangronsveld J, Thijs S.	Plants (Basel)	10.3390/plants9081002	2020
	A ribosomally synthesised and post-translationally modified peptide containing a beta-enamino acid and a macrocyclic motif.	Wang S, Lin S, Fang Q, Gyampoh R, Lu Z, Gao Y, Clarke DJ, Wu K, Trembleau L, Yu Y, Kyeremeh K, Milne BF, Tabudravu J, Deng H.	Nat Commun	10.1038/s41467-022-32774-3	2022
Genetics	Prokaryotic diversity of tropical coastal sand dunes ecosystem using metagenomics.	Shet SA, Garg S.	3 Biotech	10.1007/s13205-021-02809-5	2021
Metabolism	Structure and mechanism of iron translocation by a Dps protein from Microbacterium arborescens.	Pesek J, Buchler R, Albrecht R, Boland W, Zeth K.	J Biol Chem	10.1074/jbc.m111.246108	2011
	Beneficial Plant Microorganisms Affect the Endophytic Bacterial Communities of Durum Wheat Roots as Detected by Different Molecular Approaches.	Agnolucci M, Palla M, Cristani C, Cavallo N, Giovannetti M, De Angelis M, Gobbetti M, Minervini F.	Front Microbiol	10.3389/fmicb.2019.02500	2019
	Microbial Monitoring in the EDEN ISS Greenhouse, a Mobile Test Facility in Antarctica.	Fahrion J, Fink C, Zabel P, Schubert D, Mysara M, Van Houdt R, Eikmanns B, Beblo-Vranesevic K, Rettberg P.	Front Microbiol	10.3389/fmicb.2020.00525	2020
Metabolism	Advanced Oxidation Processes and Biotechnological Alternatives for the Treatment of Tannery Wastewater.	Urbina-Suarez NA, Machuca-Martinez F, Barajas-Solano AF.	Molecules	10.3390/molecules26113222	2021
Metabolism	Bioavailability of selenium accumulated by selenite-reducing bacteria.	Combs GF, Garbisu C, Yee BC, Yee A, Carlson DE, Smith NR, Magyarosy AC, Leighton T, Buchanan BB.	Biol Trace Elem Res	10.1007/bf02789163	1996
	Root Bacteria Recruited by Phragmites australis in Constructed Wetlands Have the Potential to Enhance Azo-Dye Phytodepuration.	Riva V, Mapelli F, Syranidou E, Crotti E, Choukrallah R, Kalogerakis N, Borin S.	Microorganisms	10.3390/microorganisms7100384	2019
	Endophytic Phytoaugmentation: Treating Wastewater and Runoff Through Augmented Phytoremediation.	Redfern LK, Gunsch CK.	Ind Biotechnol (New Rochelle N Y)	10.1089/ind.2015.0016	2016
	Assessment of Artificial and Natural Transport Mechanisms of Ice Nucleating Particles in an Alpine Ski Resort in Obergurgl, Austria.	Baloh P, Els N, David RO, Larose C, Whitmore K, Sattler B, Grothe H.	Front Microbiol	10.3389/fmicb.2019.02278	2019
	Antibacterial and cytotoxic activities of naphthoquinone pigments from Onosma visianii Clem.	Vukic MD, Vukovic NL, Djelic GT, Popovic SL, Zaric MM, Baskic DD, Krstic GB, Tesevic VV, Kacaniova MM.	EXCLI J	10.17179/excli2016-762	2017
Pathogenicity	Biofilm-degrading enzymes from Lysobacter gummosus.	Gokcen A, Vilcinskas A, Wiesner J.	Virulence	10.4161/viru.27919	2014
Metabolism	Fate of selenate and selenite metabolized by Rhodobacter sphaeroides.	Van Fleet-Stalder V, Chasteen TG, Pickering IJ, George GN, Prince RC.	Appl Environ Microbiol	10.1128/aem.66.11.4849-4853.2000	2000
Metabolism	Spatially oscillating activity and microbial succession of mercury-reducing biofilms in a technical-scale bioremediation system.	von Canstein H, Li Y, Leonhauser J, Haase E, Felske A, Deckwer WD, Wagner-Dobler I.	Appl Environ Microbiol	10.1128/aem.68.4.1938-1946.2002	2002
	Microbacterium plantarum sp. nov. and Microbacterium thalli sp. nov., two endophytic metal-resistant bacteria isolated from Sphaeralcea angustifolia (Cav.) G. Don and Prosopis laevigata (Humb. et Bonpl. ex Willd) M.C. Johnston.	Arroyo-Herrera I, Roman-Ponce B, Bustamante-Brito R, Guevara-Luna J, Larios-Serrato V, Carro L, Mariano Igual J, Geiger O, Sanchez-Reyes A, Estrada-de Los Santos P, Wang ET, Vasquez-Murrieta MS.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006052	2023
Phylogeny	Microbacterium ulmi sp. nov., a xylanolytic, phosphate-solubilizing bacterium isolated from sawdust of Ulmus nigra.	Rivas R, Trujillo ME, Sanchez M, Mateos PF, Martinez-Molina E, Velazquez E.	Int J Syst Evol Microbiol	10.1099/ijs.0.02724-0	2004
Phylogeny	Microbacterium caowuchunii sp. nov. and Microbacterium lushaniae sp. nov., isolated from plateau pika (Ochotona curzoniae) on the Qinghai-Tibet Plateau of PR China.	Tian Z, Yang J, Lai XH, Pu J, Jin D, Luo X, Huang Y, Li J, Zhang G, Wang S, Xu J	Int J Syst Evol Microbiol	10.1099/ijsem.0.004662	2021
Phylogeny	Microbacterium radiodurans sp. nov., a UV radiation-resistant bacterium isolated from soil.	Zhang W, Zhu HH, Yuan M, Yao Q, Tang R, Lin M, Yang SZ, Li ZK, Chen M	Int J Syst Evol Microbiol	10.1099/ijs.0.017400-0	2010
Phylogeny	Microbacterium kribbense sp. nov., isolated from soil.	Dastager SG, Lee JC, Ju YJ, Park DJ, Kim CJ	Int J Syst Evol Microbiol	10.1099/ijs.0.2008/001222-0	2008
Phylogeny	Microbacterium ginsengisoli sp. nov., a beta-glucosidase-producing bacterium isolated from soil of a ginseng field.	Park MJ, Kim MK, Kim HB, Im WT, Yi TH, Kim SY, Soung NK, Yang DC	Int J Syst Evol Microbiol	10.1099/ijs.0.65226-0	2008
Phylogeny	Microbacterium paludicola sp. nov., a novel xylanolytic bacterium isolated from swamp forest.	Park HY, Kim KK, Jin L, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.63945-0	2006

References

#9061	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20754
#18772	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20216	Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) . Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI):
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#37359	; Curators of the CIP;
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#116472	Collection of Institut Pasteur ; Curators of the CIP; CIP 55.81
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Microbacterium arborescens (DSM 20754, ATCC 4358, IFO 3750)

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