Name: Microbacterium saperdae 48-1-4
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 7365

Type strain:

Species: Microbacterium saperdae

Strain Designation: 48-1-4, 3126

Culture col. no.: DSM 20169, ATCC 19272, CCEB 366, CCUG 33092, JCM 1352, BCRC 12119, CCM 4972, CGMCC 1.1906, CIP 104420, HAMBI 1890, IAM 12547, IFO 15038, IMET 11076, KCTC 3469, LMG 16343, NBRC 15038, NCDO 2265, NCIMB 702265, NRRL B-14833, VKM Ac-1022, VKM Ac-1414, CNF 058

Strain history: CIP <- 1995, JCM <- K. Suzuki: strain CNF 058 <- AJ: strain 3126 <- CCEB <- O. Lysenko: strain 48-1-4

NCBI tax ID(s): 69368 (species)

SI-ID 8205

LMG 16343, ATCC 19272, CCRC 12119, CCUG 33092, CIP 104420, DSM 20169, IAM 12547, IFO 15038, IMET 11076, JCM 1352, NCFB 2265, NCIMB 702265, NCDO2265, VKM Ac-1414, VKM Ac-1022, KCTC 3469, NBRC 15038, NRRL B-14833, CCM 4972, BCRC 12119, HAMBI 1890, CGMCC 1.1906

Special Collections

Section

Microbacterium saperdae 48-1-4 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from elm borer .

Gram-positive
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Microbacterium*
	Species	**Microbacterium saperdae**
	Full Scientific Name (LPSN)	Microbacterium saperdae (Lysenko 1959) Takeuchi and Hatano 1998

	Synonym	Curtobacterium saperdae
	Synonym	Aureobacterium saperdae
	Synonym	Brevibacterium saperdae

Information on morphological and physiological properties Morphology

[Ref.: #122485]	Gram stain	positive

[Ref.: #122485]	Cell shape	rod-shaped

[Ref.: #122485]	Motility	yes

[Ref.: #18635]	Colony color	Sand yellow (1002)
[Ref.: #18635]	Incubation period	10-14 days
[Ref.: #18635]	Cultivation medium used	ISP 2

[Ref.: #18635]	Colony color	Zinc yellow (1018)
[Ref.: #18635]	Incubation period	10-14 days
[Ref.: #18635]	Cultivation medium used	ISP 3

[Ref.: #18635]	Colony color	Colorless
[Ref.: #18635]	Incubation period	10-14 days
[Ref.: #18635]	Cultivation medium used	ISP 4

[Ref.: #18635]	Colony color	Colorless
[Ref.: #18635]	Incubation period	10-14 days
[Ref.: #18635]	Cultivation medium used	ISP 6

[Ref.: #18635]	Multicellular complex forming ability	no
[Ref.: #18635]	Medium Name (multicellularity)	ISP 2

[Ref.: #18635]	Multicellular complex forming ability	no
[Ref.: #18635]	Medium Name (multicellularity)	ISP 3

[Ref.: #18635]	Multicellular complex forming ability	no
[Ref.: #18635]	Medium Name (multicellularity)	ISP 4

[Ref.: #18635]	Multicellular complex forming ability	no
[Ref.: #18635]	Medium Name (multicellularity)	ISP 6

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18635]

Culture medium

ISP 2

[Ref.: #18635]

Culture medium growth

[Ref.: #18635]

Culture medium composition

expand / minimize

[Ref.: #18635]

Culture medium

ISP 3

[Ref.: #18635]

Culture medium growth

[Ref.: #18635]

Culture medium composition

expand / minimize

[Ref.: #18635]

Culture medium

ISP 4

[Ref.: #18635]

Culture medium growth

[Ref.: #18635]

Culture medium composition

expand / minimize

[Ref.: #18635]

Culture medium

ISP 6

[Ref.: #18635]

Culture medium growth

[Ref.: #18635]

Culture medium composition

expand / minimize

[Ref.: #38667]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #38667]

Culture medium growth

[Ref.: #38667]

Culture medium composition

expand / minimize

[Ref.: #8600]

Culture medium

CORYNEBACTERIUM AGAR (DSMZ Medium 53)

[Ref.: #8600]

Culture medium growth

[Ref.: #8600]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8600]

Culture medium composition

expand / minimize

[Ref.: #122485]

Culture medium

CIP Medium 3

[Ref.: #122485]

Culture medium growth

[Ref.: #122485]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #8600]		growth	30 °C
[Ref.: #18635]		optimum	28 °C
[Ref.: #38667]		growth	30 °C
[Ref.: #51373]		growth	26 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #122485]	no	growth	41 °C
[Ref.: #122485]	no	growth	37 °C
[Ref.: #122485]	no	growth	10 °C
[Ref.: #122485]		growth	15-30 °C
[Ref.: #122485]	no	growth	45 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #51373]	Oxygen tolerance	aerobe
[Ref.: #122485]	Oxygen tolerance	obligate aerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %99

	Salt	Tested relation		Salt conc.
[Ref.: #18635]	NaCl		growth	0	%
[Ref.: #122485]	NaCl		growth	0-4	%
[Ref.: #122485]	NaCl	no	growth	6	%
[Ref.: #122485]	NaCl	no	growth	8	%
[Ref.: #122485]	NaCl	no	growth	10	%

[Ref.: #8600]	Murein short key	B06
[Ref.: #8600]	Murein types	B2ß {Gly} [L-Hsr] D-Glu(Hyg)-Gly-D-Orn

[Ref.: #67770]

Observation

quinones: MK-12 (MK-11)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18635]	arabinose ChEBI	-
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #18635]	cellulose ChEBI	+
[Ref.: #122485]	citrate ChEBI	-	carbon source
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #68379]	D-glucose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #122485]	esculin ChEBI	+	hydrolysis
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #18635]	fructose ChEBI	-
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #18635]	glucose ChEBI	-
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #122485]	hippurate ChEBI	+	hydrolysis
[Ref.: #68379]	lactose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #68379]	maltose ChEBI	+	fermentation	* from API Coryne
[Ref.: #18635]	mannitol ChEBI	-
[Ref.: #18635]	myo-inositol ChEBI	-
[Ref.: #122485]	nitrate ChEBI	-	reduction
[Ref.: #122485]	nitrate ChEBI	-	respiration
[Ref.: #122485]	nitrite ChEBI	-	reduction
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #18635]	raffinose ChEBI	-
[Ref.: #18635]	rhamnose ChEBI	-
[Ref.: #122485]	sodium thiosulfate ChEBI	-	builds gas from
[Ref.: #18635]	sucrose ChEBI	-
[Ref.: #68379]	sucrose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68379]	urea ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
[Ref.: #18635]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #122485]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no

	Metabolite	Production
[Ref.: #122485]	indole ChEBI	no
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #122485]	acetoin ChEBI	-
[Ref.: #122485]	glucose ChEBI		-
[Ref.: #68368]	acetoin ChEBI	+			* from API 20E
[Ref.: #68368]	indole ChEBI			-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #122485]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68379]	alkaline phosphatase	-	3.1.3.1	* from API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym, API Coryne
[Ref.: #122485]	amylase	+
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #122485]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym, API Coryne, API 20E
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne
[Ref.: #68379]	beta-glucuronidase	+	3.2.1.31	* from API Coryne
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #122485]	caseinase	-	3.4.21.50
[Ref.: #122485]	catalase	+	1.11.1.6
[Ref.: #122485]	DNase	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #122485]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #122485]	gelatinase	-
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #122485]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #122485]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #122485]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #122485]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #122485]	oxidase	-
[Ref.: #122485]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #122485]	protease	-
[Ref.: #68379]	pyrazinamidase	+	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #122485]	tryptophan deaminase	-
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #122485]	urease	-	3.5.1.5
[Ref.: #68379]	urease	+	3.5.1.5	* from API Coryne
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18635]	173	+	-	-	-	-	-	-	-	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #122485]	659	not determinedn.d.	+	+	+	+	+	-	-	+	-	+	+	-	-	-	-	+	-	-	+	+	+	+	+	+	-	+	-	-	-	-	-	+	-	+	-	+	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	+	-

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #18635]	183	+/-	+	+	-	+	+	+	-	-	+	+	not determinedn.d.	+	+	-	+	+	+	+	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18635]	270	not determinedn.d.	+	+	+	-	+	+	+	-	-	+	+	+	+	-	+	+	+	+	-
[Ref.: #122485]	7938	-	+	+	+	-	+	-	-	-	-	+	+	+	+	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8600]	Sample type/isolated from	elm borer (Saperda carcharias)
[Ref.: #8600]	Host species	Saperda carcharias

[Ref.: #67770]	Sample type/isolated from	Saperda carcharias Linnaeus (Coleoptera)
[Ref.: #67770]	Host species	Saperda carcharias
[Ref.: #67770]	Geographic location (country and/or sea, region)	Mikulov
[Ref.: #67770]	Country	Czechoslovakia
[Ref.: #67770]	Continent	Europe

[Ref.: #122485]	Sample type/isolated from	Elm borer, Saperda carcharias
* marker position based on {}

Isolation sources categories

#Host

#Arthropoda

#Insecta

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18635]	Biosafety level	1	Risk group (German classification)
[Ref.: #8600]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122485]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Microbacterium saperdae 16S rRNA gene	Y17236	1473	GenBank ENA	69368 tax ID	*
[Ref.: #20218]	Microbacterium saperdae gene for 16S rRNA, partial sequence	AB004719	1407	GenBank ENA	69368 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Microbacterium saperdae DSM 20169	GCA_006716345	contig	GenBank ENA	69368 tax ID
[Ref.: #66792]	Microbacterium saperdae JCM 1352	GCA_014646775	contig	GenBank ENA	69368 tax ID	*
[Ref.: #66792]	Microbacterium saperdae strain DSM 20169	69368.3	wgs	PATRIC	69368 tax ID	*
[Ref.: #66792]	Microbacterium saperdae strain JCM 1352	69368.4	wgs	PATRIC	69368 tax ID	*
[Ref.: #66792]	Microbacterium saperdae DSM 20169	2816332114	draft	JGI IMG/M	69368 tax ID	*

[Ref.: #8600]	GC-content	68.5 mol%
[Ref.: #67770]	GC-content	69.1 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	68.5 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	72.5 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Microbacterium saperdae strain JCM 1352 PATRIC: 69368.4
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	99	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Microbacterium saperdae strain DSM 20169 PATRIC: 69368.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	88.454	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	74.648	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.967	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	85.285	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	78.5	no

Availability in culture collections External links

[Ref.: #8600]

Culture collection no.

DSM 20169, ATCC 19272, CCEB 366, CCUG 33092, JCM 1352, BCRC 12119, CCM 4972, CGMCC 1.1906, CIP 104420, HAMBI 1890, IAM 12547, IFO 15038, IMET 11076, KCTC 3469, LMG 16343, NBRC 15038, NCDO 2265, NCIMB 702265, NRRL B-14833, VKM Ac-1022, VKM Ac-1414, CNF 058

[Ref.: #76814]

SI-ID 8205

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microbacterium algeriense sp. nov., a novel actinobacterium isolated from Algerian oil production waters.	Lenchi N, Anzil A, Servais P, Kebbouche-Gana S, Gana ML, Lliros M	Int J Syst Evol Microbiol	10.1099/ijsem.0.004434	2020	*
Phylogeny	Microbacterium oleivorans sp. nov. and Microbacterium hydrocarbonoxydans sp. nov., novel crude-oil-degrading Gram-positive bacteria.	Schippers A, Bosecker K, Sproer C, Schumann P	Int J Syst Evol Microbiol	10.1099/ijs.0.63305-0	2005	*

References

#8600

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20169

#18635

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#38667 ; Curators of the CIP;
#51373 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 33092

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#76814

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID8205.1 )

#122485 Collection of Institut Pasteur ; Curators of the CIP; CIP 104420
* These data were automatically processed and therefore are not curated

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Microbacterium saperdae strain JCM 1352

Microbacterium saperdae strain DSM 20169

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