Microbacterium flavescens (CCUG 29000, DSM 20643, ATCC 13348)

Name: Microbacterium flavescens (CCUG 29000, DSM 20643, ATCC 13348)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7364

Type strain

Strain Designation 401

Culture col. no. CCUG 29000 DSM 20643 ATCC 13348 NCIB 9221 401 18 more

NCBI tax ID(s) 69366

Special Collections DSMZ CCUG JCM KCTC CIP Wink compendium

History <- NCIB <- A.G. Lochhead, 401 DSM 20643 <-- NCIB 9221 <-- A. G. Lochhead 401. CIP <- 1986, DSM <- NCIB <- A.G. Lochhead: strain 401, Arthrobacter flavescens

Links

Microbacterium flavescens 401 is an obligate aerobe, Gram-positive, rod-shaped bacterium that was isolated from soil.

Gram-positive rod-shaped obligate aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 1010

LMG 3028,ATCC 13348,CCUG 29000,DSM 20643,IMET 10367,JCM 3877,NCIB 9221,VKM B-657,JCM 11568,CIP 102401,NBIMCC 2370,NCIMB 9221,IFO15039,VKM Ac-1415,KCTC 3389,KCTC 3437,CCRC 12361,NBRC 15039,HAMBI 1909,BCRC 12361,HAMBI 1871,CDBB 545,NCIB 92221,NRRL B-24238,IAM 15203

@ref 20215

Last LPSN update 2026-02-09 11:19:27

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Microbacteriaceae

Genus Microbacterium

Species Microbacterium flavescens

Full scientific name Microbacterium flavescens (Lochhead 1958) Takeuchi and Hatano 1998

Synonyms (2)

Arthrobacter flavescens
Aureobacterium flavescens

BacDive ID	Other strains from **Microbacterium flavescens** (1)	Type strain
100895	M. flavescens STH00443(ZIMET), LM161, HKI 0443, IMSNU 50530

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
119368	positive	rod-shaped
125438			94.5
125438	positive		91.615

Colony morphology

@ref	Incubation period	Medium used
18767	10-14 days	ISP 2
18767	10-14 days	ISP 3
119368

Multicellular morphology

@ref	Forms multicellular complex	Medium name
18767		ISP 2
18767		ISP 3

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
18767	ISP 2		Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
18767	ISP 3		Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
38098	MEDIUM 363 - for Microbacterium flavescens		Distilled water make up to (750.000 ml);Agar (15.000 g);Peptone (5.000 g);Beef extract (3.000 g);Earth extract - M0541 (250.000 ml)
8863	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92; with strain-specific modifications) Composition: Soil extract 250.0 g/l Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
119368	CIP Medium 363	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
8863	positive	growth	26
18767	positive	optimum	28
38098	positive	growth	25
67770	positive	growth	28
119368	positive	growth	10-30
119368	negative	growth	37
119368	negative	growth	41
119368	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
119368	obligate aerobe
125439	obligate aerobe	99.7

Spore formation

@ref	Spore formation	Confidence
125439		94.6

Halophily

@ref	Salt	Growth	Tested relation	Concentration
18767	NaCl	positive	growth	0 %
119368	NaCl	positive	growth	0-4 %
119368	NaCl		growth	6 %
119368	NaCl		growth	8 %
119368	NaCl		growth	10 %

Murein

@ref	Murein short key	Type
8863	B06	B2ß {Gly} [L-Hsr] D-Glu(Hyg)-Gly-D-Orn

Observation

67770

Observationquinones: MK-13, MK-14

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
119368	16947 ChEBI	citrate	-	carbon source
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
68371	17108 ChEBI	D-arabinose	+	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
68371	17634 ChEBI	D-glucose	-	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	+	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68379	4853 ChEBI	esculin	+	hydrolysis	from API Coryne
119368	4853 ChEBI	esculin	+	hydrolysis
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
119368	606565 ChEBI	hippurate	-	hydrolysis
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	+	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	+	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
119368	17632 ChEBI	nitrate	+	reduction
119368	17632 ChEBI	nitrate	-	respiration
119368	16301 ChEBI	nitrite	-	reduction
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68379	17992 ChEBI	sucrose	+	fermentation	from API Coryne
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
119368	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite
68368	16136 ChEBI	hydrogen sulfide	from API 20E
119368	35581 ChEBI	indole
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test	Voges-proskauer-test	Methylred-test
119368	15688 ChEBI	acetoin		+
119368	17234 ChEBI	glucose			+
68368	35581 ChEBI	indole	-			from API 20E

Enzymes

@ref	Value	Activity	Ec
119368	alcohol dehydrogenase	-	1.1.1.1
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68379	alpha-glucosidase	+	3.2.1.20	from API Coryne
119368	amylase	+
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
119368	beta-galactosidase	+	3.2.1.23
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68382	beta-glucosidase	+	3.2.1.21	from API zym
68379	beta-glucosidase	+	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
119368	caseinase	+	3.4.21.50
119368	catalase	+	1.11.1.6
68379	catalase	-	1.11.1.6	from API Coryne
119368	DNase	+
68382	esterase lipase (C 8)	+		from API zym
119368	gamma-glutamyltransferase	-	2.3.2.2
119368	gelatinase	+/-
119368	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
119368	lipase	-
119368	lysine decarboxylase	-	4.1.1.18
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68379	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API Coryne
119368	ornithine decarboxylase	-	4.1.1.17
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
119368	oxidase	-
119368	phenylalanine ammonia-lyase	+	4.3.1.24
119368	protease	-
68379	pyrazinamidase	+	3.5.1.B15	from API Coryne
119368	tryptophan deaminase	-
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
119368	tween esterase	-
119368	urease	-	3.5.1.5
68368	urease	-	3.5.1.5	from API 20E

Fatty acid profile

Metadata FA analysis

@ref

49476

Fatty acid	Percentage	ECL
C15:0 ANTEISO	62.7	14.711
C17:0 anteiso	11.6	16.722
C15:0 ISO	9.4	14.621
C16:0 iso	6.8	15.626
C17:0 iso	6.8	16.629
C16:0	1.7	16
C13:0 ANTEISO	1	12.701

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
18767	+	-	-	-	-	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
18767	-	+	+	-	+	+	+	+	+	+	-	not determinedn.d.	-	+	-	+	+	+	+	-	not determinedn.d.
49476	-	+	-	+	-	-	+	+	+	-	+	-	-	-	+	-	-	-	+	-	-

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
18767	not determinedn.d.	+	+	+	-	+	+	+	+	+	+	-	-	+	-	+	+	+	-	-
49476	-	-	-	+	-	+	-	-	-	+	-	-	-	-	-	+	+	+	-	-
119368	-	+	+	+	+	+	+	+	-	-	+	+	-	-	-	+	+	-	+	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
119368	not determinedn.d.	-	-	+	+	+	+	-	-	-	-	-	+	-	-	+	-	-	+/-	+/-	-	-	-	-	-	+/-	+/-	+/-	+/-	-	-	+	+/-	-	-	-	-	+/-	-	-	+/-	-	-	-	-	-	-	+/-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
119368	not determinedn.d.	+	+	+	+	+	-	-	+	-	+	+	-	-	-	-	+	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	+	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	+	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	-	+	+	+	-	+	-	-	-	+	-	-	+	+	-	-	+	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type
8863	soil
49476	Soil
67770	Soil
119368	Environment, Soil

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
8863	1	Risk group (German classification) According to TRBA 466
18767	1	Risk group (German classification) According to TRBA 466
119368	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1858894v1 assembly for Microbacterium flavescens JCM 3877	scaffold	GCA_018588945	69366.3	2996289532	69366	75.09

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Microbacterium flavescens 16S rRNA gene	Y17232	1471	69366
20218	Microbacterium flavescens gene for 16S rRNA, partial sequence	AB004716	1467	69366
124043	Microbacterium flavescens strain IFO 15039 16S ribosomal RNA gene, partial sequence.	MN894280	1044	69366

GC content

@ref	GC-content (mol%)	Method
8863	66.9
67770	70.3	Buoyant density centrifugation (BD)
67770	66.9	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Microbacterium flavescens JCM 3877
NCBI: GCA_018588945

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	94.60	no
125439	motility	BacteriaNetⓘ	yes	50.90	no
125439	gram_stain	BacteriaNetⓘ	positive	81.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Microbacterium flavescens JCM 3877
NCBI: GCA_018588945.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.62	no
125438	anaerobic	anaerobicⓘ	no	97.64	yes
125438	aerobic	aerobicⓘ	yes	89.07	yes
125438	spore-forming	spore-formingⓘ	no	78.44	no
125438	thermophilic	thermophileⓘ	no	98.43	no
125438	flagellated	motile2+ⓘ	no	94.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Phenotypic and genotypic properties of Microbacterium yannicii, a recently described multidrug resistant bacterium isolated from a lung transplanted patient with cystic fibrosis in France.	Sharma P, Diene SM, Thibeaut S, Bittar F, Roux V, Gomez C, Reynaud-Gaubert M, Rolain JM.	BMC Microbiol	10.1186/1471-2180-13-97	2013
Phylogeny	Alterations of oral microbiota in young children with autism: Unraveling potential biomarkers for early detection.	Tang JW, Hau CC, Tong WM, Watt RM, Yiu CKY, Shum KK.	J Dent	10.1016/j.jdent.2024.105486	2025
	Iron(III) Complexes with Hybrid-Type Artificial Siderophores Containing Catecholate and Hydroxamate Sites.	Inomata T, Endo S, Ido H, Mori R, Iwai Y, Ozawa T, Masuda H.	Inorg Chem	10.1021/acs.inorgchem.3c01786	2023
	Safety Monitoring of Colistin Therapy in Critically Ill Neonates With Late-Onset Sepsis: A Retrospective Observational Study.	Arcagok BC, Yaman A, Rzayev T, Jalalzada N, Kandemir I, Memisoglu A, Bilgen HS.	Pharmacol Res Perspect	10.1002/prp2.70178	2025
	Multi-year comparison of VITEK MS performance for identification of rarely encountered pathogenic Gram-negative organisms (GNOs) in a large integrated Canadian healthcare region.	Church DL, Griener T, Gregson D.	Microbiol Spectr	10.1128/spectrum.02276-24	2024
Phylogeny	Microbial and Monosaccharide Composition of Biofilms Developing on Sandy Loams from an Aquifer Contaminated with Liquid Radioactive Waste.	Babich TL, Popova NM, Sokolova DS, Perepelov AV, Safonov AV, Nazina TN.	Microorganisms	10.3390/microorganisms12020275	2024
	Metaproteomic Analysis of an Oral Squamous Cell Carcinoma Dataset Suggests Diagnostic Potential of the Mycobiome.	He S, Chakraborty R, Ranganathan S.	Int J Mol Sci	10.3390/ijms24021050	2023
	Mycobiota and diet-derived fungal xenosiderophores promote Salmonella gastrointestinal colonization.	Santus W, Rana AP, Devlin JR, Kiernan KA, Jacob CC, Tjokrosurjo J, Underhill DM, Behnsen J.	Nat Microbiol	10.1038/s41564-022-01267-w	2022
Pathogenicity	Using phenotype microarrays in the assessment of the antibiotic susceptibility profile of bacteria isolated from wastewater in on-site treatment facilities.	Jalowiecki L, Chojniak J, Dorgeloh E, Hegedusova B, Ejhed H, Magner J, Plaza G.	Folia Microbiol (Praha)	10.1007/s12223-017-0516-9	2017
	Adsorption behavior of microbes on a QCM chip modified with an artificial siderophore-Fe3+ complex.	Inomata T, Eguchi H, Funahashi Y, Ozawa T, Masuda H.	Langmuir	10.1021/la203250n	2012
	Bacteria as Potential Indicators of Heavy Metal Contamination in a Tropical Mangrove and the Implications on Environmental and Human Health.	De La Rosa-Acosta M, Jimenez-Collazo J, Maldonado-Roman M, Malave-Llamas K, Musa-Wasil JC.	J Trop Life Sci	10.11594/jtls.05.03.01	2015
Enzymology	[Isolation and identification of dominant microorganisms in rhizosphere of continuous cropping with peanut].	Yan Y, Zhang H, Liu L, Xian H, Cui D.	Wei Sheng Wu Xue Bao		2011
Genetics	Bacterial diversity and the antimicrobial resistome in the southwestern highlands of Saudi Arabia.	Yasir M, Khan R, Ullah R, Bibi F, Khan I, Mustafa Karim A, Al-Ghamdi AK, Azhar EI.	Saudi J Biol Sci	10.1016/j.sjbs.2021.11.047	2022
Pathogenicity	Properties of Antibiotic-Resistant Bacteria Isolated from Onsite Wastewater Treatment Plant in Relation to Biofilm Formation.	Jalowiecki L, Zur J, Chojniak J, Ejhed H, Plaza G.	Curr Microbiol	10.1007/s00284-017-1428-2	2018
	Adsorption of microorganisms onto an artificial siderophore-modified Au substrate.	Inomata T, Eguchi H, Matsumoto K, Funahashi Y, Ozawa T, Masuda H.	Biosens Bioelectron	10.1016/j.bios.2007.08.015	2007
Metabolism	Isolation of Bacterial Endophytes from Phalaris arundinacea and their Potential in Diclofenac and Sulfamethoxazole Degradation.	Wegrzyn A, Felis E.	Pol J Microbiol	10.21307/pjm-2018-039	2018
Enzymology	Siderophore mediated plutonium accumulation by Microbacterium flavescens (JG-9).	John SG, Ruggiero CE, Hersman LE, Tung CS, Neu MP.	Environ Sci Technol	10.1021/es010590g	2001
Genetics	Four new Microbacterium species isolated from seaweeds and reclassification of five Microbacterium species with a proposal of Paramicrobacterium gen. nov. under a genome-based framework of the genus Microbacterium.	Lee SD, Yang HL, Kim IS.	Front Microbiol	10.3389/fmicb.2023.1299950	2023
Metabolism	Synthesis, solution behavior, thermal stability, and biological activity of an Fe(III) complex of an artificial siderophore with intramolecular hydrogen bonding networks.	Matsumoto K, Ozawa T, Jitsukawa K, Masuda H.	Inorg Chem	10.1021/ic048761g	2004
	Bacterial contamination of dental unit waterlines.	Szymanska J, Sitkowska J.	Environ Monit Assess	10.1007/s10661-012-2812-9	2013
Phylogeny	Union of the genera Microbacterium Orla-Jensen and Aureobacterium Collins et al. in a redefined genus Microbacterium.	Takeuchi M, Hatano K.	Int J Syst Bacteriol	10.1099/00207713-48-3-739	1998
	Bacterial diversity obtained by culturable approaches in the gut of Glossina pallidipes population from a non sleeping sickness focus in Tanzania: preliminary results.	Malele I, Nyingilili H, Lyaruu E, Tauzin M, Bernard Ollivier B, Cayol JL, Fardeau ML, Geiger A.	BMC Microbiol	10.1186/s12866-018-1288-3	2018
Genetics	Comparative Genomics of Microbacterium Species to Reveal Diversity, Potential for Secondary Metabolites and Heavy Metal Resistance.	Corretto E, Antonielli L, Sessitsch A, Hofer C, Puschenreiter M, Widhalm S, Swarnalakshmi K, Brader G.	Front Microbiol	10.3389/fmicb.2020.01869	2020
Enzymology	Distinctive molecular and biochemical characteristics of a glycoside hydrolase family 20 beta-N-acetylglucosaminidase and salt tolerance.	Zhou J, Song Z, Zhang R, Liu R, Wu Q, Li J, Tang X, Xu B, Ding J, Han N, Huang Z.	BMC Biotechnol	10.1186/s12896-017-0358-1	2017
Metabolism	Bioremediation: a genuine technology to remediate radionuclides from the environment.	Prakash D, Gabani P, Chandel AK, Ronen Z, Singh OV.	Microb Biotechnol	10.1111/1751-7915.12059	2013
Metabolism	The Histoplasma capsulatum vacuolar ATPase is required for iron homeostasis, intracellular replication in macrophages and virulence in a murine model of histoplasmosis.	Hilty J, Smulian AG, Newman SL.	Mol Microbiol	10.1111/j.1365-2958.2008.06395.x	2008
Metabolism	Potential role for extracellular glutathione-dependent ferric reductase in utilization of environmental and host ferric compounds by Histoplasma capsulatum.	Timmerman MM, Woods JP.	Infect Immun	10.1128/iai.69.12.7671-7678.2001	2001
Phylogeny	Microbacterium sulfonylureivorans sp. nov., isolated from sulfonylurea herbicides degrading consortium.	Ma Q, Kong D, Zhang Q, Li M, Han X, Che J, Zhou Y, Zhang W, Jiang X, Ruan Z	Arch Microbiol	10.1007/s00203-021-02750-4	2022
Phylogeny	Microbacterium aureliae sp. nov., a novel actinobacterium isolated from Aurelia aurita, the moon jellyfish.	Kaur G, Mual P, Kumar N, Verma A, Kumar A, Krishnamurthi S, Mayilraj S	Int J Syst Evol Microbiol	10.1099/ijsem.0.001407	2016

References

#8863	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20643
#18767	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#38098	; Curators of the CIP;
#49476	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 29000
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#68371	Automatically annotated from API 50CH acid .
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#119368	Collection of Institut Pasteur ; Curators of the CIP; CIP 102401
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Microbacterium flavescens (CCUG 29000, DSM 20643, ATCC 13348)

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API 20E

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