Microbacterium barkeri (DSM 20145, ATCC 15954, CCM 1928)

Name: Microbacterium barkeri (DSM 20145, ATCC 15954, CCM 1928)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7363

Type strain

Strain Designation 7

Culture col. no. DSM 20145 ATCC 15954 CCM 1928 NCIB 9658 NRRL B-24231 19 more

NCBI tax ID(s) 33917

Special Collections DSMZ CCUG JCM KCTC CIP Wink compendium

Links

Microbacterium barkeri 7 is an aerobe, mesophilic, Gram-positive prokaryote that was isolated from raw domestic sewage.

Gram-positive rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 13956

LMG 16341,ATCC 15954,CCM 1928,CCRC 11642,CCUG 33090,CIP 102692,DSM 20145,IAM 12585,IFO 15036,IMET 10688,JCM 1343,NCFB 2287,NCIMB 9658,VKM Ac-1020,NCIB 9658,NCDO 2287,KCTC 3197,NBRC 15036,BCRC 11642,HAMBI 1894,NRRL B-24231,CGMCC 1.1902,VTT E-072706

@ref 20215

Last LPSN update 2025-12-16 09:48:34

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Microbacteriaceae

Genus Microbacterium

Species Microbacterium barkeri

Full scientific name Microbacterium barkeri (Collins et al. 1983 ex Dias et al. 1962) Takeuchi and Hatano 1998

Synonyms (1)

Aureobacterium barkeri

BacDive ID	Other strains from **Microbacterium barkeri** (2)	Type strain
100899	M. barkeri STI07501(IMET), IMRU 1072, IMET 7501
100900	M. barkeri STI07502(IMET), IMET 7502, IMRU 1074

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
116735	positive	rod-shaped
125439	positive			99.6

Colony morphology

@ref	Colony color	Incubation period	Medium used
18629	Ivory (1014)	10-14 days	ISP 2
18629	Ivory (1014)	10-14 days	ISP 3
18629	Ivory (1014)	10-14 days	ISP 4
18629	Golden yellow (1004)	10-14 days	ISP 6
116735

Multicellular morphology

@ref	Forms multicellular complex	Medium name
18629		ISP 2
18629		ISP 3
18629		ISP 4
18629		ISP 6

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
18629	ISP 2		Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
18629	ISP 3		Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
18629	ISP 4		Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
18629	ISP 6		Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
38104	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
8569	CORYNEBACTERIUM AGAR (DSMZ Medium 53)	Medium recipe at MediaDive	Name: CORYNEBACTERIUM AGAR (DSMZ Medium 53) Composition: Agar 15.0 g/l Casein peptone 10.0 g/l NaCl 5.0 g/l Glucose 5.0 g/l Yeast extract 5.0 g/l Distilled water
116735	CIP Medium 3	Medium recipe at CIP
116735	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
8569	positive	growth	30	mesophilic
18629	positive	optimum	28	mesophilic
38104	positive	growth	30	mesophilic
51371	positive	growth	37	mesophilic
67770	positive	growth	28	mesophilic
116735	positive	growth	15-45
116735	negative	growth	10

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
51371	aerobe
116735	obligate aerobe
125439	obligate aerobe	96.9

Compound production

@ref	Compound
8569	pectin methylesterase
8569	pectin transeliminase
20216	Pectin methyl-esterase
20216	pectin transeliminase

Halophily

@ref	Salt	Growth	Tested relation	Concentration
18629	NaCl	positive	maximum	5 %
116735	NaCl	positive	growth	0-8 %
116735	NaCl		growth	10 %

Murein

@ref	Murein short key	Type
8569	B06	B2ß {Gly} [L-Hsr] D-Glu(Hyg)-Gly-D-Orn

Observation

67770

Observationquinones: MK-11, MK-12

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
18629	22599 ChEBI	arabinose	+
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
18629	62968 ChEBI	cellulose	-
116735	16947 ChEBI	citrate	+	carbon source
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68379	16899 ChEBI	D-mannitol	+	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	+	fermentation	from API Coryne
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
116735	4853 ChEBI	esculin	+	hydrolysis
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
18629	28757 ChEBI	fructose	-
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68379	5291 ChEBI	gelatin	+	hydrolysis	from API Coryne
68368	5291 ChEBI	gelatin	+	hydrolysis	from API 20E
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
18629	17234 ChEBI	glucose	+
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
116735	606565 ChEBI	hippurate	+	hydrolysis
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68379	17716 ChEBI	lactose	+	fermentation	from API Coryne
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68379	17306 ChEBI	maltose	+	fermentation	from API Coryne
18629	29864 ChEBI	mannitol	-
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
18629	17268 ChEBI	myo-inositol	+
68379	17632 ChEBI	nitrate	+	reduction	from API Coryne
116735	17632 ChEBI	nitrate	-	reduction
116735	17632 ChEBI	nitrate	-	respiration
116735	16301 ChEBI	nitrite	-	reduction
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
18629	16634 ChEBI	raffinose	-
18629	26546 ChEBI	rhamnose	-
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
18629	17992 ChEBI	sucrose	+
68379	17992 ChEBI	sucrose	+	fermentation	from API Coryne
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68379	16199 ChEBI	urea	+	hydrolysis	from API Coryne
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid
18629	18222 ChEBI	xylose	-

Antibiotic resistance

@ref	Metabolite	Is antibiotic	Is sensitive	Is resistant
116735	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
116735	35581 ChEBI	indole
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test	Indole test
116735	15688 ChEBI	acetoin	-
68368	15688 ChEBI	acetoin	-			from API 20E
116735	17234 ChEBI	glucose		-
68368	35581 ChEBI	indole			-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
116735	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68379	alkaline phosphatase	-	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68379	alpha-glucosidase	+	3.2.1.20	from API Coryne
68382	alpha-mannosidase	+	3.2.1.24	from API zym
116735	amylase	+
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68382	beta-galactosidase	+	3.2.1.23	from API zym
116735	beta-galactosidase	+	3.2.1.23
68379	beta-galactosidase	+	3.2.1.23	from API Coryne
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68382	beta-glucosidase	+	3.2.1.21	from API zym
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	+	3.2.1.31	from API Coryne
116735	caseinase	+	3.4.21.50
116735	catalase	+	1.11.1.6
116735	DNase	+
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
116735	gamma-glutamyltransferase	-	2.3.2.2
116735	gelatinase	+
68379	gelatinase	+		from API Coryne
68368	gelatinase	+		from API 20E
116735	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
116735	lipase	-
116735	lysine decarboxylase	-	4.1.1.18
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
116735	ornithine decarboxylase	-	4.1.1.17
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
116735	oxidase	-
116735	phenylalanine ammonia-lyase	-	4.3.1.24
116735	protease	-
68379	pyrazinamidase	+	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	+	3.4.19.3	from API Coryne
68382	trypsin	+	3.4.21.4	from API zym
116735	tryptophan deaminase	-
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
116735	tween esterase	-
116735	urease	-	3.5.1.5
68379	urease	+	3.5.1.5	from API Coryne
68368	urease	-	3.5.1.5	from API 20E
68382	valine arylamidase	+		from API zym

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
18629	+	-	-	-	-	-	-	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
18629	+	+	+	-	+	+	+	-	-	+	+	not determinedn.d.	-	+	-	+	+	+	+	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
18629	not determinedn.d.	+	+	+	-	+	+	+	+	-	+	+	-	+	-	+	+	+	+	-
116735	-	+	+	+	+	+	+	-	+	-	+	+	+	+	-	+	+	+	+	+

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
116735	not determinedn.d.	-	-	-	+/-	-	+/-	-	-	+/-	+/-	+/-	+/-	+/-	-	-	-	+/-	+/-	-	-	-	+/-	-	+/-	+	+/-	+/-	+/-	+/-	+/-	+/-	-	-	+/-	+/-	+/-	+/-	-	-	+/-	-	-	-	-	-	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
116735	not determinedn.d.	+	+	+	+	+	-	+	+	+	+	+	+	+	-	-	+	-	-	+	-	+	+	+	-	-	+	-	-	+	-	-	+	+	+	+	+	-	-	-	-	-	+	-	-	-	-	-	-	-	+	+	-	-	+	-	-	+	+	-	+	+	-	+	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	+	+	+	-	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Waste	#Wastewater

Isolation

@ref	Sample type
8569	raw domestic sewage
67770	Raw domestic sewage
116735	Environment, Sewage

Taxonmaps

69479

Global distribution of 16S sequence X77446 (>99% sequence identity) for Actinomycetia from Microbeatlas

Aquatic Samples	173
Soil Samples	98
Animal Samples	294
Plant Samples	33
Total Samples	598

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
8569	1	Risk group (German classification) According to TRBA 466
18629	1	German classification According to TRBA 466
116735	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM3145631v1 assembly for Microbacterium barkeri DSM 20145	contig	GCA_031456315	33917.17	2919382452	33917	78.23
124043	ASM4264808v1 assembly for Microbacterium barkeri CCM 1928	contig	GCA_042648085			33917	74.18
124043	ASM2792176v1 assembly for Microbacterium barkeri VKM Ac-1020	scaffold	GCA_027921765	33917.11		33917	64.41

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
8569	A.barkeri (DSM 20145) 16S rRNA gene	X77446	1468		33917

GC content

@ref	GC-content (mol%)	Method
8569	74.4
67770	68.7	thermal denaturation, midpoint method (Tm)
67770	74.4	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Microbacterium barkeri DSM 20145
IMG: 2919382452

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	57.10	no
125439	motility	BacteriaNetⓘ	no	75.40	no
125439	gram_stain	BacteriaNetⓘ	positive	99.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.90	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Bioactivity of Microbacterium barkeri (LMA4) In Vitro and Candidate Gene Annotation In Silico.	Das KK, Pattnaik S.	Appl Biochem Biotechnol	10.1007/s12010-023-04519-5	2024
Phylogeny	Identification of Pseudopestalotiopsis ampullacea as a new pathogen causing tea gray blight in India and its management strategies.	Pandey AK, Yadav S, Hubballi M, Sharma HK.	Sci Rep	10.1038/s41598-024-80354-w	2024
	Bioconversion of steviol glycosides into steviol by Microbacterium barkeri.	Jiang HL, Xuan Y, Zeng Q, Yu QJ, Zhang YQ, Chen YR, Luo HB, Huang H, Xu Q.	J Asian Nat Prod Res	10.1080/10286020.2020.1830379	2021
Enzymology	Acute hypersensitivity pneumonitis in woodworkers caused by inhalation of birch dust contaminated with Pantoea agglomerans and Microbacterium barkeri.	Mackiewicz B, Dutkiewicz J, Siwiec J, Kucharczyk T, Siek E, Wojcik-Fatla A, Cholewa G, Cholewa A, Pasciak M, Pawlik K, Szponar B, Milanowski J.	Ann Agric Environ Med	10.26444/aaem/114931	2019
	Deciphering the complex interplay between gut microbiota and crop residue breakdown in forager and hive bees (Apis mellifera L.).	Rudra Gouda MN, Kumaranag KM, Ramakrishnan B, Subramanian S.	Curr Res Microb Sci	10.1016/j.crmicr.2024.100233	2024
	Functional traits and phylogenetic analysis of top-soil inhabiting rhizobacteria associated with tea rhizospheres in North Bengal, India.	Pandey AK, Dinesh K, Yadav S, Sharma HK, Babu A.	Curr Res Microb Sci	10.1016/j.crmicr.2023.100200	2023
Genetics	Interaction of plant-derived metabolites and rhizobiome functions enhances drought stress tolerance.	Kazarina A, Sarkar S, Adams B, Vogt B, Rodela L, Pogranichny S, Powell S, Wiechman H, Heeren L, Reese N, Thompson D, Ran Q, Hartung E, Akhunova A, Akhunov E, Johnson L, Jumpponen A, Lee STM.	Genome Biol	10.1186/s13059-025-03778-1	2025
	Bacterial disinfection in a sunlight/visible-light-driven photocatalytic reactor by recyclable natural magnetic sphalerite.	Peng X, Ng TW, Huang G, Wang W, An T, Wong PK.	Chemosphere	10.1016/j.chemosphere.2016.09.090	2017
	Observation of the Antimicrobial Activities of Two Actinomycetes in the Harvester Ant Messor orientalis.	Wu Y, Liu Y, Yu J, Xu Y, Chen S.	Insects	10.3390/insects13080691	2022
Transcriptome	Integrated metabolite profiling and transcriptome analysis unraveling mechanism of RC catabolism in Paenarthrobacter ilicis CR5301.	Li H, Sun D, Cao L, Wang B.	Front Microbiol	10.3389/fmicb.2023.1180388	2023
Metabolism	Isolation, characterization and identification of pericarp-degrading bacteria for the production of off-odour-free white pepper from fresh berries of Piper nigrum L.	Vinod V, Kumar A, Zachariah TJ.	J Appl Microbiol	10.1111/jam.12431	2014
Enzymology	Assessment of bacterial diversity in agricultural by-product compost by sequencing of cultivated isolates and amplified rDNA restriction analysis.	Chandna P, Chandna P, Mallik S, Kuhad RC.	Appl Microbiol Biotechnol	10.1007/s00253-012-4434-0	2013
	Autoinducer-2 activity produced by bacteria found in smear of surface ripened cheeses	Gori K, Moslehi-Jenabian S, Purrotti M, Jespersen L.	Int Dairy J	10.1016/j.idairyj.2010.06.009	2011
Genetics	Four new Microbacterium species isolated from seaweeds and reclassification of five Microbacterium species with a proposal of Paramicrobacterium gen. nov. under a genome-based framework of the genus Microbacterium.	Lee SD, Yang HL, Kim IS.	Front Microbiol	10.3389/fmicb.2023.1299950	2023
	Ancient Relatives of Modern Maize From the Center of Maize Domestication and Diversification Host Endophytic Bacteria That Confer Tolerance to Nitrogen Starvation.	Dumigan CR, Muileboom J, Gregory J, Shrestha A, Hewedy OA, Raizada MN.	Front Plant Sci	10.3389/fpls.2021.660673	2021
Enzymology	Purification and kinetics of the PHB depolymerase of Microbacterium paraoxydans RZS6 isolated from a dumping yard.	Sayyed RZ, Wani SJ, Alyousef AA, Alqasim A, Syed A, El-Enshasy HA.	PLoS One	10.1371/journal.pone.0212324	2019
Phylogeny	Characterisation of aerobically grown non-spore-forming bacteria from paper mill pulps containing recycled fibres.	Suihko ML, Skytta E.	J Ind Microbiol Biotechnol	10.1007/s10295-008-0472-0	2009
	Spatio-temporal variations of airborne bacteria from the municipal wastewater treatment plant: a case study in Ahvaz, Iran.	Talepour N, Hassanvand MS, Abbasi-Montazeri E, Latifi SM, Jaafarzadeh Haghighi Fard N.	J Environ Health Sci Eng	10.1007/s40201-020-00470-3	2020
	Evaluation of functional diversity in rhizobacterial taxa of a wild grass (Saccharum ravennae) colonizing abandoned fly ash dumps in Delhi urban ecosystem	Rau N, Misra V, Sharma M, Das MK, Ahaluwalia K, Sharma RS.	Soil Biol Biochem	10.1016/j.soilbio.2009.01.022	2009
Phylogeny	Identification and differentiation of species and strains of Arthrobacter and Microbacterium barkeri isolated from smear cheeses with Amplified Ribosmal DNA Restriction Analysis (ARDRA) and pulsed field gel electrophoresis (PFGE).	Hoppe-Seyler TS, Jaeger B, Bockelmann W, Noordman WH, Geis A, Heller KJ.	Syst Appl Microbiol	10.1078/072320203322497473	2003
Enzymology	Isolation and Characterization of Levoglucosan-Metabolizing Bacteria.	Arya AS, Hang MTH, Eiteman MA.	Appl Environ Microbiol	10.1128/aem.01868-21	2022
	Aeolian transport of viable microbial life across the Atacama Desert, Chile: Implications for Mars.	Azua-Bustos A, Gonzalez-Silva C, Fernandez-Martinez MA, Arenas-Fajardo C, Fonseca R, Martin-Torres FJ, Fernandez-Sampedro M, Fairen AG, Zorzano MP.	Sci Rep	10.1038/s41598-019-47394-z	2019
Phylogeny	Union of the genera Microbacterium Orla-Jensen and Aureobacterium Collins et al. in a redefined genus Microbacterium.	Takeuchi M, Hatano K.	Int J Syst Bacteriol	10.1099/00207713-48-3-739	1998
Phylogeny	Pearl Millet Genetic Traits Shape Rhizobacterial Diversity and Modulate Rhizosphere Aggregation.	Ndour PMS, Gueye M, Barakat M, Ortet P, Bertrand-Huleux M, Pablo AL, Dezette D, Chapuis-Lardy L, Assigbetse K, Kane NA, Vigouroux Y, Achouak W, Ndoye I, Heulin T, Cournac L.	Front Plant Sci	10.3389/fpls.2017.01288	2017
Genetics	Microbial metagenomes from three aquifers in the Fennoscandian shield terrestrial deep biosphere reveal metabolic partitioning among populations.	Wu X, Holmfeldt K, Hubalek V, Lundin D, Astrom M, Bertilsson S, Dopson M.	ISME J	10.1038/ismej.2015.185	2016
	Isoprenoid Pyrophosphate-Dependent Transcriptional Regulation of Carotenogenesis in Corynebacterium glutamicum.	Henke NA, Heider SAE, Hannibal S, Wendisch VF, Peters-Wendisch P.	Front Microbiol	10.3389/fmicb.2017.00633	2017
Metabolism	Interaction of operational and physicochemical factors leading to Gordonia amarae-like foaming in an incompletely nitrifying activated sludge plant.	Asvapathanagul P, Huang Z, Gedalanga PB, Baylor A, Olson BH.	Appl Environ Microbiol	10.1128/aem.00404-12	2012
	Surface microflora of four smear-ripened cheeses.	Mounier J, Gelsomino R, Goerges S, Vancanneyt M, Vandemeulebroecke K, Hoste B, Scherer S, Swings J, Fitzgerald GF, Cogan TM.	Appl Environ Microbiol	10.1128/aem.71.11.6489-6500.2005	2005
Metabolism	Diversity and distribution of N-acylhomoserine lactone (AHL)-degrading activity and AHL-lactonase (AiiM) in genus microbacterium.	Wang WZ, Morohoshi T, Someya N, Ikeda T.	Microbes Environ	10.1264/jsme2.me11341	2012
Phylogeny	Discovery of a new bacterium, Microbacterium betulae sp. nov., in birch wood associated with hypersensitivity pneumonitis in woodworkers.	Pasciak M, Pawlik KJ, Martynowski D, Laczmanski L, Ciekot J, Szponar B, Wojcik-Fatla A, Mackiewicz B, Farian E, Cholewa G, Cholewa A, Dutkiewicz J.	Environ Microbiol Rep	10.1111/1758-2229.13311	2024
Phylogeny	Microbacterium luticocti sp. nov., isolated from sewage sludge compost.	Vaz-Moreira I, Lopes AR, Falsen E, Schumann P, Nunes OC, Manaia CM.	Int J Syst Evol Microbiol	10.1099/ijs.0.65494-0	2008
Phylogeny	Microbacterium gubbeenense sp. nov., from the surface of a smear-ripened cheese.	Brennan NM, Brown R, Goodfellow M, Ward AC, Beresford TP, Vancanneyt M, Cogan TM, Fox PF.	Int J Syst Evol Microbiol	10.1099/00207713-51-6-1969	2001
Phylogeny	Microbacterium gilvum sp. nov., isolated from civet faeces.	Chen X, Li QY, Li GD, Xu FJ, Jiang Y, Han L, Jiang CL, Huang XS	Antonie Van Leeuwenhoek	10.1007/s10482-016-0718-1	2016
Phylogeny	Microbacterium oryzae sp. nov., an actinobacterium isolated from rice field soil.	Kumari P, Bandyopadhyay S, Das SK	Int J Syst Evol Microbiol	10.1099/ijs.0.046870-0	2012
Phylogeny	Microbacterium indicum sp. nov., isolated from a deep-sea sediment sample from the Chagos Trench, Indian Ocean.	Shivaji S, Bhadra B, Rao RS, Chaturvedi P, Pindi PK, Raghukumar C	Int J Syst Evol Microbiol	10.1099/ijs.0.64782-0	2007

References

#8569	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20145
#18629	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20216	Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) . Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI):
#38104	; Curators of the CIP;
#51371	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 33090
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#68371	Automatically annotated from API 50CH acid .
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#116735	Collection of Institut Pasteur ; Curators of the CIP; CIP 102692
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Microbacterium barkeri (DSM 20145, ATCC 15954, CCM 1928)

Name and taxonomic classification

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API coryne

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