Leucobacter denitrificans (DSM 25936, KACC 14055, NBRC 106309)

Name: Leucobacter denitrificans (DSM 25936, KACC 14055, NBRC 106309)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7362

Type strain

Strain Designation M1T8B10

Culture col. no. DSM 25936 KACC 14055 NBRC 106309 M1T8B10

NCBI tax ID(s) 683042

Special Collections DSMZ

History DSMZ <- NBRC; NBRC 10639 <- S. W. Kwon, KACC; M1T8B10

Links

Leucobacter denitrificans M1T8B10 is a bacterium that was isolated from cow dung.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 281732

DSM 25936,NBRC 106309

@ref 20215

Last LPSN update 2026-05-29 08:26:37

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Microbacteriaceae

Genus Leucobacter

Species Leucobacter denitrificans

Full scientific name Leucobacter denitrificans Weon et al. 2012

Morphology

Cell morphology

@ref	Motility	Confidence
125438		94.988

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
18128	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
18128	positive	growth	28

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		99.415

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
18128	cow dung	Suwon	Republic of Korea	KOR	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
18128	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1439638v1 assembly for Leucobacter denitrificans KACC 14055	complete	GCA_014396385	683042.3	2894972566	683042	87.06
124043	ASM4265560v1 assembly for Leucobacter denitrificans KACC 14055	scaffold	GCA_042655605			683042	49

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
18128	Leucobacter denitrificans strain M1T8B10 16S ribosomal RNA gene, partial sequence	GQ246672	1436		683042

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1439638v1 assembly for Leucobacter denitrificans KACC 14055
BV-BRC: 683042.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	79.29	no
125439	gram_stain	BacteriaNetⓘ	negative	45.28	no
125439	motility	BacteriaNetⓘ	yes	41.17	no
125439	spore_formation	BacteriaNetⓘ	no	99.42	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Leucobacter denitrificans KACC 14055
NCBI: GCA_014396385.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	87.25	no
125438	anaerobic	anaerobicⓘ	no	99.17	no
125438	aerobic	aerobicⓘ	yes	84.73	no
125438	spore-forming	spore-formingⓘ	no	87.46	no
125438	thermophilic	thermophileⓘ	no	94.50	yes
125438	flagellated	motile2+ⓘ	no	94.99	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Leucobacter populi sp. nov. isolated from a symptomatic bark of Populus x euramericana canker.	Fang W, Li X, Tan XM, Wang LF, Piao CG, Li Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.001020	2016
Phylogeny	Leucobacter humi sp. nov., Isolated from Forest Soil.	Her J, Lee SS	Curr Microbiol	10.1007/s00284-015-0820-z	2015
Phylogeny	Leucobacter denitrificans sp. nov., isolated from cow dung.	Weon HY, Anandham R, Tamura T, Hamada M, Kim SJ, Kim YS, Suzuki K, Kwon SW	J Microbiol	10.1007/s12275-012-1324-1	2012
Phylogeny	Leucobacter chinensis sp. nov., with plant growth-promoting potential isolated from field soil after seven-years continuous maize cropping.	Zhu J, Che J, Jiang X, Ma M, Guan D, Li L, Cao F, Zhao B, Kang Y, Zhao J, Kong D, Zhou Y, Ruan Z, Li J	Int J Syst Evol Microbiol	10.1099/ijsem.0.005417	2022

References

#18128	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25936
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Leucobacter denitrificans (DSM 25936, KACC 14055, NBRC 106309)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014396385

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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