Name: Leucobacter celer subsp. celer DSM 26651
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7361

Type strain:

Species: Leucobacter celer subsp. celer

Culture col. no.: DSM 26651, JCM 16465, KACC 14220, NAL 101

Strain history: J.-W. Bae NAL101.

NCBI tax ID(s): 668625 (species)

Section

Leucobacter celer subsp. celer DSM 26651 is a mesophilic bacterium that was isolated from gajami-sikhae, a traditional Korean fermented food.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Leucobacter*
	Species	**Leucobacter celer subsp. celer**
	Full Scientific Name (LPSN)	Leucobacter celer subsp. celer (Shin et al. 2011) Clark and Hodgkin 2015

Information on morphological and physiological properties Morphology

[Ref.: #69330]	Colony color	Light ivory (1015)
[Ref.: #69330]	Cultivation medium used	ISP 4

[Ref.: #69330]	Colony color	Light ivory (1015)
[Ref.: #69330]	Cultivation medium used	ISP 6

[Ref.: #69330]	Colony color	Light ivory (1015)
[Ref.: #69330]	Cultivation medium used	ISP 7

[Ref.: #69330]	Colony color	Light ivory (1015)
[Ref.: #69330]	Cultivation medium used	suter with tyrosine

[Ref.: #69330]	Colony color	Light ivory (1015)
[Ref.: #69330]	Cultivation medium used	suter without tyrosine

[Ref.: #69330]	Colony color	Oyster white (1013)
[Ref.: #69330]	Cultivation medium used	ISP 2

[Ref.: #69330]	Colony color	Oyster white (1013)
[Ref.: #69330]	Cultivation medium used	ISP 5

[Ref.: #69330]	Pigment production	no
[Ref.: #69330]	Pigment name	Melanin
[Ref.: #69330]	Pigment production	yes
[Ref.: #69330]	Pigmentation color	Light ivory (1015)
[Ref.: #69330]	Pigment name	soluble pigment

[Ref.: #69330]	Multicellular complex forming ability	no
[Ref.: #69330]	Multicellular complex name	Aerial mycelium
[Ref.: #69330]	Medium Name (multicellularity)	ISP 2

[Ref.: #69330]	Multicellular complex forming ability	no
[Ref.: #69330]	Multicellular complex name	Aerial mycelium
[Ref.: #69330]	Medium Name (multicellularity)	ISP 4

[Ref.: #69330]	Multicellular complex forming ability	no
[Ref.: #69330]	Multicellular complex name	Aerial mycelium
[Ref.: #69330]	Medium Name (multicellularity)	ISP 5

[Ref.: #69330]	Multicellular complex forming ability	no
[Ref.: #69330]	Multicellular complex name	Aerial mycelium
[Ref.: #69330]	Medium Name (multicellularity)	ISP 6

[Ref.: #69330]	Multicellular complex forming ability	no
[Ref.: #69330]	Multicellular complex name	Aerial mycelium
[Ref.: #69330]	Medium Name (multicellularity)	ISP 7

[Ref.: #69330]	Multicellular complex forming ability	no
[Ref.: #69330]	Multicellular complex name	Aerial mycelium
[Ref.: #69330]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69330]	Multicellular complex forming ability	no
[Ref.: #69330]	Multicellular complex name	Aerial mycelium
[Ref.: #69330]	Medium Name (multicellularity)	suter without tyrosine

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18264]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #18264]

Culture medium growth

[Ref.: #18264]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18264]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #18264]			growth	28 °C
[Ref.: #67770]			growth	37 °C

[Ref.: #18264]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69330]		NaCl		growth	0-7.5	%

[Ref.: #67770]

Observation

quinones: MK-11, MK-9, MK-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69330]	arabinose ChEBI	+	growth
[Ref.: #69330]	cellulose ChEBI	-	growth
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69330]	fructose ChEBI	+	growth
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69330]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69330]	inositol ChEBI	+	growth
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69330]	mannose ChEBI	+	growth
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #69330]	raffinose ChEBI	+	growth
[Ref.: #69330]	rhamnose ChEBI	+	growth
[Ref.: #69330]	sucrose ChEBI	+	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #69330]	xylose ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68379]	alkaline phosphatase	-	3.1.3.1	* from API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym, API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym, API Coryne
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym, API Coryne
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API Coryne
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym, API Coryne
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68379]	urease	+	3.5.1.5	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69330]	3823	-	-	-	-	-	-	-	-	-	+	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69330]	6007	not determinedn.d.	+/-	+	+	+/-	+	+/-	+/-	+/-	-	+/-	+/-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18264]	Sample type/isolated from	gajami-sikhae, a traditional Korean fermented food
[Ref.: #18264]	Country	Republic of Korea
[Ref.: #18264]	Country ISO 3 Code	KOR
[Ref.: #18264]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Gajami sikhae (jeotgal), a traditional Korean fermented seafood
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Seafood
#Engineered	#Food production	#Fermented

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GQ504012 (>99% sequence identity) for Leucobacter celer from Microbeatlas

Aquatic Samples	99
Soil Samples	29
Animal Samples	828
Plant Samples	23
Total Samples	979

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18264]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18264]	Leucobacter celer strain NAL101 16S ribosomal RNA gene, partial sequence	GQ504012	1445	ENA	1930748 tax ID

[Ref.: #18264]	GC-content	68.8 mol%	fluorimetric
[Ref.: #18264]	GC-content	69.22 mol%	sequence analysis
[Ref.: #67770]	GC-content	68.8 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	69.22 mol%	genome sequence analysis

Availability in culture collections External links

[Ref.: #18264]

Culture collection no.

DSM 26651, JCM 16465, KACC 14220, NAL 101

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Leucobacter triazinivorans sp. nov., a s-triazine herbicide prometryn-degrading bacterium isolated from sludge.	Sun LN, Pan DD, Wu XW, Yang ED, Hua RM, Li QX	Int J Syst Evol Microbiol	10.1099/ijsem.0.002483	2017	*
Phylogeny	Leucobacter corticis sp. nov., isolated from symptomatic bark of Populus x euramericana canker.	Li Y, Fang W, Xie SJ, Yang X, Wang LF	Int J Syst Evol Microbiol	10.1099/ijsem.0.001934	2017	*
Phylogeny	Leucobacter populi sp. nov. isolated from a symptomatic bark of Populus x euramericana canker.	Fang W, Li X, Tan XM, Wang LF, Piao CG, Li Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.001020	2016	*
Phylogeny	Description of Leucobacter holotrichiae sp. nov., isolated from the gut of Holotrichia oblita larvae.	Zhu D, Zhang P, Li P, Wu J, Xie C, Sun J, Niu L	Int J Syst Evol Microbiol	10.1099/ijsem.0.000957	2016	*
Phylogeny	Leucobacter musarum subsp. musarum sp. nov., subsp. nov., Leucobacter musarum subsp. japonicus subsp. nov., and Leucobacter celer subsp. astrifaciens subsp. nov., three nematopathogenic bacteria isolated from Caenorhabditis, with an emended description of Leucobacter celer.	Clark LC, Hodgkin J	Int J Syst Evol Microbiol	10.1099/ijsem.0.000523	2015	*
Phylogeny	Leucobacter celer sp. nov., isolated from Korean fermented seafood.	Shin NR, Kim MS, Jung MJ, Roh SW, Nam YD, Park EJ, Bae JW	Int J Syst Evol Microbiol	10.1099/ijs.0.026211-0	2010	*

References

#18264

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26651

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69330

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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