Leucobacter komagatae (DSM 8803, IAM 1093, IFO 15245)

Name: Leucobacter komagatae (DSM 8803, IAM 1093, IFO 15245)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7348

Type strain

Culture col. no. DSM 8803 IAM 1093 IFO 15245 NBRC 15245 JCM 9414 7 more

NCBI tax ID(s) 55969

Special Collections DSMZ CCUG JCM KCTC CIP UCCCB

History <- IFO IFO 15245 <-- IAM 1093 <-- IFO. IFO CIP <- 1987, IFO <- 1993, IAM

Links

Leucobacter komagatae DSM 8803 is an obligate aerobe, Gram-positive, rod-shaped bacterium that was isolated from culture contaminant.

Gram-positive rod-shaped obligate aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 128560

CIP 105084,IFO 15245,JCM 9414,DSM 8803,NCIMB 13513,VKM Ac-2073,IAM 1093,NBRC 15245,LMG 22181,CCUG 49676

@ref 20215

Last LPSN update 2026-02-09 11:19:27

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Microbacteriaceae

Genus Leucobacter

Species Leucobacter komagatae

Full scientific name Leucobacter komagatae Takeuchi et al. 1996

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
120459	positive	rod-shaped
125438				93.5

Colony morphology

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
3409	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
41479	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
120459	CIP Medium 3	Medium recipe at CIP
120459	CIP Medium 251	Medium recipe at CIP
120459	CIP Medium 99	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
3409	positive	growth	30
41479	positive	growth	30
67770	positive	growth	30
67772	positive	optimum	30
120459	positive	growth	15-30
120459	negative	growth	10
120459	negative	growth	37
120459	negative	growth	41
120459	negative	growth	45

Physiology and metabolism

Oxygen tolerance

120459

Oxygen toleranceobligate aerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
120459	NaCl	positive	growth	0-6 %
120459	NaCl		growth	8 %
120459	NaCl		growth	10 %

Observation

67770

Observationquinones: MK-11, MK-11, MK-10, MK-12

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
120459	16947 ChEBI	citrate	-	carbon source
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	-	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
120459	4853 ChEBI	esculin	-	hydrolysis
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
120459	606565 ChEBI	hippurate	+	hydrolysis
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
120459	17632 ChEBI	nitrate	-	reduction
120459	17632 ChEBI	nitrate	-	respiration
120459	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
120459	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
120459	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
120459	15688 ChEBI	acetoin	-
120459	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
120459	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
120459	amylase	-
120459	beta-galactosidase	-	3.2.1.23
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
120459	caseinase	-	3.4.21.50
120459	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
120459	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
120459	gamma-glutamyltransferase	-	2.3.2.2
120459	gelatinase	-
120459	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
120459	lipase	-
68382	lipase (C 14)	-		from API zym
120459	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
120459	ornithine decarboxylase	-	4.1.1.17
120459	oxidase	-
120459	phenylalanine ammonia-lyase	-	4.3.1.24
120459	protease	-
68382	trypsin	-	3.4.21.4	from API zym
120459	tween esterase	+
120459	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	adipate degradation	100	2 of 2
66794	teichoic acid biosynthesis	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	ppGpp biosynthesis	100	4 of 4
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	suberin monomers biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	valine metabolism	100	9 of 9
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	palmitate biosynthesis	100	22 of 22
66794	threonine metabolism	90	9 of 10
66794	chorismate metabolism	88.89	8 of 9
66794	ketogluconate metabolism	87.5	7 of 8
66794	leucine metabolism	84.62	11 of 13
66794	proline metabolism	81.82	9 of 11
66794	vitamin K metabolism	80	4 of 5
66794	lipoate biosynthesis	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	glutamate and glutamine metabolism	78.57	22 of 28
66794	photosynthesis	78.57	11 of 14
66794	citric acid cycle	78.57	11 of 14
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	phenylalanine metabolism	76.92	10 of 13
66794	glycolysis	76.47	13 of 17
66794	acetate fermentation	75	3 of 4
66794	biotin biosynthesis	75	3 of 4
66794	gluconeogenesis	75	6 of 8
66794	isoleucine metabolism	75	6 of 8
66794	cyclohexanol degradation	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	vitamin B6 metabolism	72.73	8 of 11
66794	purine metabolism	72.34	68 of 94
66794	heme metabolism	71.43	10 of 14
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	pyrimidine metabolism	71.11	32 of 45
66794	Entner Doudoroff pathway	70	7 of 10
66794	NAD metabolism	66.67	12 of 18
66794	acetoin degradation	66.67	2 of 3
66794	arginine metabolism	66.67	16 of 24
66794	serine metabolism	66.67	6 of 9
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	tryptophan metabolism	65.79	25 of 38
66794	histidine metabolism	65.52	19 of 29
66794	alanine metabolism	65.52	19 of 29
66794	methionine metabolism	65.38	17 of 26
66794	phenol degradation	65	13 of 20
66794	pentose phosphate pathway	63.64	7 of 11
66794	oxidative phosphorylation	62.64	57 of 91
66794	C4 and CAM-carbon fixation	62.5	5 of 8
66794	degradation of sugar alcohols	62.5	10 of 16
66794	glycine betaine biosynthesis	60	3 of 5
66794	cellulose degradation	60	3 of 5
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	gallate degradation	60	3 of 5
66794	methylglyoxal degradation	60	3 of 5
66794	propionate fermentation	60	6 of 10
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	propanol degradation	57.14	4 of 7
66794	tetrahydrofolate metabolism	57.14	8 of 14
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	androgen and estrogen metabolism	56.25	9 of 16
66794	cysteine metabolism	55.56	10 of 18
66794	lipid metabolism	54.84	17 of 31
66794	lysine metabolism	54.76	23 of 42
66794	urea cycle	53.85	7 of 13
66794	flavin biosynthesis	53.33	8 of 15
66794	non-pathway related	52.63	20 of 38
66794	ethanol fermentation	50	1 of 2
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	50	4 of 8
66794	butanoate fermentation	50	2 of 4
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	kanosamine biosynthesis II	50	1 of 2
66794	4-hydroxyphenylacetate degradation	50	5 of 10
66794	ribulose monophosphate pathway	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	toluene degradation	50	2 of 4
66794	glycine metabolism	50	5 of 10
66794	degradation of pentoses	46.43	13 of 28
66794	metabolism of disaccharids	45.45	5 of 11
66794	degradation of sugar acids	44	11 of 25
66794	reductive acetyl coenzyme A pathway	42.86	3 of 7
66794	glutathione metabolism	42.86	6 of 14
66794	tyrosine metabolism	42.86	6 of 14
66794	3-chlorocatechol degradation	40	2 of 5
66794	glycogen metabolism	40	2 of 5
66794	ethylmalonyl-CoA pathway	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	arachidonic acid metabolism	38.89	7 of 18
66794	vitamin B1 metabolism	38.46	5 of 13
66794	d-xylose degradation	36.36	4 of 11
66794	cholesterol biosynthesis	36.36	4 of 11
66794	dolichyl-diphosphooligosaccharide biosynthesis	36.36	4 of 11
66794	polyamine pathway	34.78	8 of 23
66794	cyanate degradation	33.33	1 of 3
66794	octane oxidation	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	3-phenylpropionate degradation	33.33	5 of 15
66794	IAA biosynthesis	33.33	1 of 3
66794	glycolate and glyoxylate degradation	33.33	2 of 6
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	allantoin degradation	33.33	3 of 9
66794	pantothenate biosynthesis	33.33	2 of 6
66794	enterobactin biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	myo-inositol biosynthesis	30	3 of 10
66794	bile acid biosynthesis, neutral pathway	29.41	5 of 17
66794	degradation of hexoses	27.78	5 of 18
66794	ascorbate metabolism	27.27	6 of 22
66794	carnitine metabolism	25	2 of 8
66794	lactate fermentation	25	1 of 4
66794	glycogen biosynthesis	25	1 of 4
66794	dTDPLrhamnose biosynthesis	25	2 of 8
66794	CMP-KDO biosynthesis	25	1 of 4
66794	vitamin E metabolism	25	1 of 4
66794	sulfate reduction	23.08	3 of 13
66794	nitrate assimilation	22.22	2 of 9
66794	lipid A biosynthesis	22.22	2 of 9
66794	4-hydroxymandelate degradation	22.22	2 of 9

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
120459	-	-	+	+	-	+	+	+	-	-	+	-	-	-	-	-	-	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
120459	not determinedn.d.	+/-	-	-	-	+/-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
120459	not determinedn.d.	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	+	-	-	+	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	+	-	-	+	-	-	+	-	-	+	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	+	+	+	+	+	+	+	-	-	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Laboratory	#Contaminant

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Host species	Isolation date
3409	culture contaminant
67770	Contaminant in an ampoule labeled "Pseudomonas riboflavina" IFO 13584						Pseudomonas riboflavina
67772	Culture contaminant	1993	Osaka	Japan	JPN	Asia
120459	Contaminant on an agar plate			Japan	JPN	Asia		1991

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
3409	1	Risk group (German classification) According to TRBA 466
67772	1
120459	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM671608v1 assembly for Leucobacter komagatae DSM 8803	contig	GCA_006716085	55969.10	2814123040	55969	66.17
124043	ASM3953418v1 assembly for Leucobacter komagatae JCM 9414	scaffold	GCA_039534185			55969	44.01

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Leucobacter komagatae gene for 16S rRNA, partial sequence	AB007419	1513	55969
20218	Leucobacter komagatae partial 16S rRNA gene, isolate IFO15245T	AJ746337	1503	55969
20218	Leucobacter komagatae 16S rRNA gene, strain DSM 8803	AM042691	1476	55969
3409	Leucobacter komagatae DNA for 16S ribosomal RNA, partial sequence	D17751	1340	55969
67770	Leucobacter komagatae gene for 16S rRNA, strain: JCM 9414	D45063	1487	55969

GC content

@ref	GC-content (mol%)	Method
3409	66	high performance liquid chromatography (HPLC)
67770	66.2	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Leucobacter komagatae DSM 8803
NCBI: GCA_006716085

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	84.20	no
125439	motility	BacteriaNetⓘ	no	64.30	no
125439	gram_stain	BacteriaNetⓘ	positive	81.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	88.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Leucobacter komagatae strain DSM 8803
PATRIC: 55969.10

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	87.50	no
125438	anaerobic	anaerobicⓘ	no	97.41	yes
125438	spore-forming	spore-formingⓘ	no	83.69	no
125438	aerobic	aerobicⓘ	yes	86.45	yes
125438	thermophilic	thermophileⓘ	no	95.83	no
125438	flagellated	motile2+ⓘ	no	93.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Genome Sequencing of the Antibiotic-Resistant Leucobacter sp. HNU-1 and Its Developmental Toxicity in Caenorhabditis elegans.	Ju J, Lu X, Gao Z, Yin H, Xu S, Li H.	Int J Mol Sci	10.3390/ijms26083673	2025
	Utilizing Biomass-Based Graphene Oxide-Polyaniline-Ag Electrodes in Microbial Fuel Cells to Boost Energy Generation and Heavy Metal Removal.	Yaqoob AA, Serra A, Bhawani SA, Ibrahim MNM, Khan A, Alorfi HS, Asiri AM, Hussein MA, Khan I, Umar K.	Polymers (Basel)	10.3390/polym14040845	2022
	Changes in the gut microbiome due to diarrhea in neonatal Korean indigenous calves.	Ku JY, Lee MJ, Jung Y, Choi HJ, Park J.	Front Microbiol	10.3389/fmicb.2025.1511430	2025
Genetics	Serpentoviruses Exhibit Diverse Organization and ORF Composition with Evidence of Recombination.	Tillis SB, Ossiboff RJ, Wellehan JFX.	Viruses	10.3390/v16020310	2024
	Lippia sidoides essential oil at concentration of 0.25% provided improvements in microbiota and intestine integrity of Danio rerio.	Cardoso L, Owatari MS, Chaves FCM, Ferreira TH, Costa DS, Furtado WE, Tedesco M, Honorato LA, Mourino JLP, Martins ML.	Braz J Vet Med	10.29374/2527-2179.bjvm005323	2024
	Exploring the potential of biosurfactants produced by fungi found in soil contaminated with petrochemical wastes.	Mahmoud YA, El-Halmouch YH, Nasr EE, Al-Sodany YM, El-Nogoumy BA, Ali SS.	Sci Rep	10.1038/s41598-024-75865-5	2024
	Comparative investigation on microbial community and electricity generation in aerobic and anaerobic enriched MFCs.	Quan XC, Quan YP, Tao K, Jiang XM.	Bioresour Technol	10.1016/j.biortech.2012.10.001	2013
Enzymology	Assessment of the microbial diversity at the surface of Livarot cheese using culture-dependent and independent approaches.	Mounier J, Monnet C, Jacques N, Antoinette A, Irlinger F.	Int J Food Microbiol	10.1016/j.ijfoodmicro.2009.04.020	2009
Enzymology	Characterization of microbial contamination in United States Air Force aviation fuel tanks.	Rauch ME, Graef HW, Rozenzhak SM, Jones SE, Bleckmann CA, Kruger RL, Naik RR, Stone MO.	J Ind Microbiol Biotechnol	10.1007/s10295-005-0023-x	2006
Phylogeny	[Characterization and phylogenetic analysis of the new species of the Leucobacter tropicalis sp. nov].	Liu H, Zhou P, Yokota A, Sugiyanma J.	Wei Sheng Wu Xue Bao		1999
Phylogeny	Cow teat skin, a potential source of diverse microbial populations for cheese production.	Verdier-Metz I, Gagne G, Bornes S, Monsallier F, Veisseire P, Delbes-Paus C, Montel MC.	Appl Environ Microbiol	10.1128/aem.06229-11	2012
	Class 1 integrons and tetracycline resistance genes in alcaligenes, arthrobacter, and Pseudomonas spp. isolated from pigsties and manured soil.	Agerso Y, Sandvang D.	Appl Environ Microbiol	10.1128/aem.71.12.7941-7947.2005	2005
Metabolism	Proteomic investigation of aphid honeydew reveals an unexpected diversity of proteins.	Sabri A, Vandermoten S, Leroy PD, Haubruge E, Hance T, Thonart P, De Pauw E, Francis F.	PLoS One	10.1371/journal.pone.0074656	2013
	Characterization and performance of a toluene-degrading biofilm developed on pumice stones.	Di Lorenzo A, Varcamonti M, Parascandola P, Vignola R, Bernardi A, Sacceddu P, Sisto R, de Alteriis E.	Microb Cell Fact	10.1186/1475-2859-4-4	2005
Phylogeny	Shifts in bacterial communities of two Caribbean reef-building coral species affected by white plague disease.	Cardenas A, Rodriguez-R LM, Pizarro V, Cadavid LF, Arevalo-Ferro C.	ISME J	10.1038/ismej.2011.123	2012
Genetics	Leucobacter manosquensis sp. nov.-A Novel Bacterial Species Isolated from Healthy Human Skin.	Boxberger M, Magnien S, Antezack A, Rolland C, Makoa Meng M, Lo CI, La Scola B, Cassir N.	Microorganisms	10.3390/microorganisms11102535	2023
Metabolism	Leucobacter chromiiresistens sp. nov., a chromate-resistant strain.	Sturm G, Jacobs J, Sproer C, Schumann P, Gescher J.	Int J Syst Evol Microbiol	10.1099/ijs.0.022780-0	2011
Phylogeny	Leucobacter humi sp. nov., Isolated from Forest Soil.	Her J, Lee SS	Curr Microbiol	10.1007/s00284-015-0820-z	2015
Phylogeny	Leucobacter denitrificans sp. nov., isolated from cow dung.	Weon HY, Anandham R, Tamura T, Hamada M, Kim SJ, Kim YS, Suzuki K, Kwon SW	J Microbiol	10.1007/s12275-012-1324-1	2012
Phylogeny	Leucobacter margaritiformis sp. nov., isolated from bamboo extract.	Lee JH, Lee SS	Curr Microbiol	10.1007/s00284-012-0089-4	2012
Phylogeny	Leucobacter iarius sp. nov., in the family Microbacteriaceae.	Somvanshi VS, Lang E, Schumann P, Pukall R, Kroppenstedt RM, Ganguly S, Stackebrandt E	Int J Syst Evol Microbiol	10.1099/ijs.0.64683-0	2007
Phylogeny	Leucobacter komagatae gen. nov., sp. nov., a new aerobic gram-positive, nonsporulating rod with 2,4-diaminobutyric acid in the cell wall.	Takeuchi M, Weiss N, Schumann P, Yokota A	Int J Syst Bacteriol	10.1099/00207713-46-4-967	1996

References

#3409	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 8803
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#41479	; Curators of the CIP;
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67772	The University of Coimbra Bacteria Culture Collection (UCCCB) ; Curators of the UCCCB;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#120459	Collection of Institut Pasteur ; Curators of the CIP; CIP 105084
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Leucobacter komagatae (DSM 8803, IAM 1093, IFO 15245)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

API zym

API 50CHac

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_006716085

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media