Name: Leifsonia aquatica 150
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7339

Type strain:

Species: Leifsonia aquatica

Strain Designation: 150

Culture col. no.: DSM 20146, ATCC 14665, NCIB 9460, CCUG 27700, CCTM La 2040, JCM 1368, BCRC 11574, CECT 535, CIP 64.13, IAM 12441, IFO 12154, IFO 15710, KCTC 9098, KCTC 9233, NBRC 12154, NBRC 15710, NCIMB 9460, NRIC 1848, VKM Ac-1400

Strain history: CIP <- 1964, E. Leifson: strain 150

NCBI tax ID(s): 1358026 (strain), 144185 (species)

SI-ID 389265

ATCC 14665, JCM 1368, DSM 20146, NCIB 9460, VKM Ac-1400, CCUG 27700, CCRC 11574, IAM 12441, NCIMB 9460, IFO 15710, IFO 12154, CECT 535, KCTC 9098, KCTC 9233, NBRC 12154, NBRC 15710, BCRC 11574, CCT 3023, CIP 64.13

Other strains from Leifsonia aquatica

L. aquatica ST033330(HKI),
L. aquatica 46.87, CIP 102793
L. aquatica CCUG 22294, ATCC 51722
L. aquatica CCUG 28357
L. aquatica CCUG 28359
L. aquatica CCUG 28360
L. aquatica CCUG 28361
L. aquatica CCUG 28381
L. aquatica CCUG 29729, ATCC 51721
L. aquatica CCUG 30288
L. aquatica CCUG 30492
L. aquatica CCUG 31268, ATCC 51723
L. aquatica CCUG 31381
L. aquatica CCUG 31729
L. aquatica CCUG 32370
L. aquatica CCUG 32634
L. aquatica CCUG 32739
L. aquatica CCUG 32923
L. aquatica CCUG 32928
L. aquatica CCUG 32929
L. aquatica CCUG 33173
L. aquatica CCUG 33823
L. aquatica CCUG 33903
L. aquatica CCUG 34181
L. aquatica CCUG 34265
L. aquatica CCUG 34266
L. aquatica CCUG 35456 A
L. aquatica CCUG 37759
L. aquatica CCUG 39403
L. aquatica CCUG 39879
L. aquatica CCUG 39881

Section

Leifsonia aquatica 150 is a mesophilic, Gram-positive bacterium that was isolated from distilled water.

Gram-positive
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Leifsonia*
	Species	**Leifsonia aquatica**
	Full Scientific Name (LPSN)	Leifsonia aquatica (ex Leifson 1962) Evtushenko et al. 2000

	Synonym	"Leifsonia* aquatica"*
	Synonym	"Corynebacterium* aquaticum"*

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #18306]	Colony color	Cream (9001)
[Ref.: #18306]	Incubation period	10-14 days
[Ref.: #18306]	Cultivation medium used	ISP 2

[Ref.: #18306]	Colony color	Lemon yellow (1012)
[Ref.: #18306]	Incubation period	10-14 days
[Ref.: #18306]	Cultivation medium used	ISP 3

[Ref.: #18306]	Colony color	Lemon yellow (1012)
[Ref.: #18306]	Incubation period	10-14 days
[Ref.: #18306]	Cultivation medium used	ISP 4

[Ref.: #18306]	Colony color	Lemon yellow (1012)
[Ref.: #18306]	Incubation period	10-14 days
[Ref.: #18306]	Cultivation medium used	ISP 6

[Ref.: #18306]	Incubation period	10-14 days
[Ref.: #18306]	Cultivation medium used	ISP 5

[Ref.: #18306]	Incubation period	10-14 days
[Ref.: #18306]	Cultivation medium used	ISP 7

[Ref.: #18306]	Multicellular complex forming ability	no
[Ref.: #18306]	Medium Name (multicellularity)	ISP 2

[Ref.: #18306]	Multicellular complex forming ability	no
[Ref.: #18306]	Medium Name (multicellularity)	ISP 3

[Ref.: #18306]	Multicellular complex forming ability	no
[Ref.: #18306]	Medium Name (multicellularity)	ISP 4

[Ref.: #18306]	Multicellular complex forming ability	no
[Ref.: #18306]	Medium Name (multicellularity)	ISP 5

[Ref.: #18306]	Multicellular complex forming ability	no
[Ref.: #18306]	Medium Name (multicellularity)	ISP 6

[Ref.: #18306]	Multicellular complex forming ability	no
[Ref.: #18306]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8570]

Culture medium

CORYNEBACTERIUM AGAR (DSMZ Medium 53)

[Ref.: #8570]

Culture medium growth

[Ref.: #8570]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8570]

Culture medium composition

expand / minimize

[Ref.: #18306]

Culture medium

ISP 2

[Ref.: #18306]

Culture medium growth

[Ref.: #18306]

Culture medium composition

expand / minimize

[Ref.: #18306]

Culture medium

ISP 3

[Ref.: #18306]

Culture medium growth

[Ref.: #18306]

Culture medium composition

expand / minimize

[Ref.: #18306]

Culture medium

ISP 4

[Ref.: #18306]

Culture medium growth

[Ref.: #18306]

Culture medium composition

expand / minimize

[Ref.: #18306]

Culture medium

ISP 5

[Ref.: #18306]

Culture medium growth

[Ref.: #18306]

Culture medium composition

expand / minimize

[Ref.: #18306]

Culture medium

ISP 6

[Ref.: #18306]

Culture medium growth

[Ref.: #18306]

Culture medium composition

expand / minimize

[Ref.: #18306]

Culture medium

ISP 7

[Ref.: #18306]

Culture medium growth

[Ref.: #18306]

Culture medium composition

expand / minimize

[Ref.: #37611]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #37611]

Culture medium growth

[Ref.: #37611]

Culture medium composition

expand / minimize

[Ref.: #116431]

Culture medium

CIP Medium 3

[Ref.: #116431]

Culture medium growth

[Ref.: #116431]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #8570]	growth	30 °C
[Ref.: #18306]	optimum	28 °C
[Ref.: #37611]	growth	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #8570]	Temperature range	mesophilic
[Ref.: #18306]	Temperature range	mesophilic
[Ref.: #37611]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #18306]		NaCl		maximum	5	%

[Ref.: #8570]	Murein short key	B07
[Ref.: #8570]	Murein types	B2gamma {Gly} [L-Dab] D-Glu-D-Dab

[Ref.: #67770]

Observation

quinones: MK-11, MK-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18306]	arabinose ChEBI	+
[Ref.: #18306]	cellulose ChEBI	+
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #18306]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E, API Coryne
[Ref.: #18306]	glucose ChEBI	+
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #18306]	mannitol ChEBI	+
[Ref.: #18306]	myo-inositol ChEBI	-
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #18306]	raffinose ChEBI	-
[Ref.: #18306]	rhamnose ChEBI	+
[Ref.: #18306]	sucrose ChEBI	+
[Ref.: #68379]	sucrose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E, API Coryne
[Ref.: #18306]	xylose ChEBI	+
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym, API Coryne
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym, API Coryne
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym, API Coryne
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API Coryne
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68379]	gelatinase	-		* from API Coryne, API 20E
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym, API Coryne
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68379]	pyrazinamidase	+	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68379]	urease	+	3.5.1.5	* from API Coryne, API 20E
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18306]	3	-	not determinedn.d.	not determinedn.d.	-	-	-	+	not determinedn.d.	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #18306]	10	-	+	-	+	-	+	+	+	+	+	-	not determinedn.d.	-	-	-	-	-	-	+	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18306]	23	not determinedn.d.	-	+	-	+	+	+	+	-	-	+	+	+	+	-	+	+	+	+	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	cellulose degradation	100	5 of 5
[Ref.: #66794]	teichoic acid biosynthesis	100	1 of 1
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	cardiolipin biosynthesis	100	7 of 7
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	pentose phosphate pathway	100	11 of 11
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	glycogen metabolism	100	5 of 5
[Ref.: #66794]	phenylacetate degradation (aerobic)	100	5 of 5
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	100	5 of 5
[Ref.: #66794]	phenylmercury acetate degradation	100	2 of 2
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	tetrahydrofolate metabolism	100	14 of 14
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	ketogluconate metabolism	100	8 of 8
[Ref.: #66794]	threonine metabolism	100	10 of 10
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	lipoate biosynthesis	100	5 of 5
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	ribulose monophosphate pathway	100	2 of 2
[Ref.: #66794]	phenylalanine metabolism	92.31	12 of 13
[Ref.: #66794]	valine metabolism	88.89	8 of 9
[Ref.: #66794]	d-mannose degradation	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	peptidoglycan biosynthesis	86.67	13 of 15
[Ref.: #66794]	leucine metabolism	84.62	11 of 13
[Ref.: #66794]	NAD metabolism	83.33	15 of 18
[Ref.: #66794]	pyrimidine metabolism	82.22	37 of 45
[Ref.: #66794]	glutamate and glutamine metabolism	82.14	23 of 28
[Ref.: #66794]	metabolism of disaccharids	81.82	9 of 11
[Ref.: #66794]	purine metabolism	80.85	76 of 94
[Ref.: #66794]	Entner Doudoroff pathway	80	8 of 10
[Ref.: #66794]	flavin biosynthesis	80	12 of 15
[Ref.: #66794]	alanine metabolism	79.31	23 of 29
[Ref.: #66794]	tryptophan metabolism	78.95	30 of 38
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	citric acid cycle	78.57	11 of 14
[Ref.: #66794]	CO2 fixation in Crenarchaeota	77.78	7 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	77.78	7 of 9
[Ref.: #66794]	glycolysis	76.47	13 of 17
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	gluconeogenesis	75	6 of 8
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	dTDPLrhamnose biosynthesis	75	6 of 8
[Ref.: #66794]	heme metabolism	71.43	10 of 14
[Ref.: #66794]	propionate fermentation	70	7 of 10
[Ref.: #66794]	4-hydroxyphenylacetate degradation	70	7 of 10
[Ref.: #66794]	myo-inositol biosynthesis	70	7 of 10
[Ref.: #66794]	vitamin B1 metabolism	69.23	9 of 13
[Ref.: #66794]	histidine metabolism	68.97	20 of 29
[Ref.: #66794]	degradation of sugar alcohols	68.75	11 of 16
[Ref.: #66794]	non-pathway related	68.42	26 of 38
[Ref.: #66794]	degradation of pentoses	67.86	19 of 28
[Ref.: #66794]	arginine metabolism	66.67	16 of 24
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	molybdenum cofactor biosynthesis	66.67	6 of 9
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	degradation of hexoses	66.67	12 of 18
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	enterobactin biosynthesis	66.67	2 of 3
[Ref.: #66794]	lipid metabolism	64.52	20 of 31
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	proline metabolism	63.64	7 of 11
[Ref.: #66794]	C4 and CAM-carbon fixation	62.5	5 of 8
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	oxidative phosphorylation	61.54	56 of 91
[Ref.: #66794]	phenol degradation	60	12 of 20
[Ref.: #66794]	gallate degradation	60	3 of 5
[Ref.: #66794]	methionine metabolism	57.69	15 of 26
[Ref.: #66794]	ubiquinone biosynthesis	57.14	4 of 7
[Ref.: #66794]	propanol degradation	57.14	4 of 7
[Ref.: #66794]	lysine metabolism	57.14	24 of 42
[Ref.: #66794]	polyamine pathway	56.52	13 of 23
[Ref.: #66794]	degradation of sugar acids	56	14 of 25
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	isoprenoid biosynthesis	53.85	14 of 26
[Ref.: #66794]	urea cycle	53.85	7 of 13
[Ref.: #66794]	3-phenylpropionate degradation	53.33	8 of 15
[Ref.: #66794]	glycolate and glyoxylate degradation	50	3 of 6
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	CMP-KDO biosynthesis	50	2 of 4
[Ref.: #66794]	androgen and estrogen metabolism	50	8 of 16
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	50	6 of 12
[Ref.: #66794]	tyrosine metabolism	50	7 of 14
[Ref.: #66794]	lactate fermentation	50	2 of 4
[Ref.: #66794]	cyclohexanol degradation	50	2 of 4
[Ref.: #66794]	carotenoid biosynthesis	50	11 of 22
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	46.15	6 of 13
[Ref.: #66794]	vitamin B6 metabolism	45.45	5 of 11
[Ref.: #66794]	4-hydroxymandelate degradation	44.44	4 of 9
[Ref.: #66794]	reductive acetyl coenzyme A pathway	42.86	3 of 7
[Ref.: #66794]	glutathione metabolism	42.86	6 of 14
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	O-antigen biosynthesis	40	2 of 5
[Ref.: #66794]	ethylmalonyl-CoA pathway	40	2 of 5
[Ref.: #66794]	D-cycloserine biosynthesis	40	2 of 5
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	35.29	6 of 17
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	lipid A biosynthesis	33.33	3 of 9
[Ref.: #66794]	arachidonic acid metabolism	33.33	6 of 18
[Ref.: #66794]	ascorbate metabolism	31.82	7 of 22
[Ref.: #66794]	benzoyl-CoA degradation	28.57	2 of 7
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	biotin biosynthesis	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	carnitine metabolism	25	2 of 8
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
[Ref.: #66794]	phenylpropanoid biosynthesis	23.08	3 of 13
[Ref.: #66794]	chlorophyll metabolism	22.22	4 of 18
[Ref.: #66794]	nitrate assimilation	22.22	2 of 9
[Ref.: #66794]	daunorubicin biosynthesis	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8570]	Sample type/isolated from	distilled water

[Ref.: #48900]	Sample type/isolated from	Distilled water

[Ref.: #67770]	Sample type/isolated from	Distilled water

[Ref.: #116431]	Sample type/isolated from	Environment, Distilled water
[Ref.: #116431]	Country	France
[Ref.: #116431]	Country ISO 3 Code	FRA
[Ref.: #116431]	Continent	Europe
[Ref.: #116431]	Isolation date	1962
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	-
#Engineered	#Industrial	#Engineered product
#Engineered	#Treatment	#Sterilized (Desinfected)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X77450 (>99% sequence identity) for Leifsonia from Microbeatlas

Aquatic Samples	123
Soil Samples	509
Animal Samples	333
Plant Samples	123
Total Samples	1088

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18306]	Biosafety level	1	Risk group (German classification)
[Ref.: #8570]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116431]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8570]	C.aquaticum (DSM 20146) 16S rRNA gene	X77450	1475	ENA	144185 tax ID
[Ref.: #67770]	Leifsonia aquatica gene for 16S ribosomal RNA	D45057	1468	ENA	144185 tax ID
[Ref.: #67770]	Leifsonia aquatica strain VKM Ac-1400 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	DQ232618	2111	ENA	144185 tax ID
[Ref.: #20218]	Leifsonia aquatica 16S ribosomal RNA gene, partial sequence	AF299364	435	ENA	144185 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Leifsonia aquatica ATCC 14665	GCA_000469485	scaffold	GenBank	1358026 tax ID
[Ref.: #66792]	Leifsonia aquatica DSM 20146	GCA_014190775	contig	GenBank	144185 tax ID	*
[Ref.: #66792]	Leifsonia aquatica ATCC 14665	1358026.3	wgs	PATRIC	1358026 tax ID	*
[Ref.: #66792]	Leifsonia aquatica strain DSM 20146	144185.6	wgs	PATRIC	144185 tax ID	*
[Ref.: #66792]	Leifsonia aquatica DSM 20146	2821241899	draft	JGI IMG/M	144185 tax ID	*
[Ref.: #66792]	Leifsonia aquatica ATCC 14665	2602041580	draft	JGI IMG/M	1358026 tax ID	*

[Ref.: #8570]	GC-content	69.3 mol%
[Ref.: #67770]	GC-content	73.2 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	69.3 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	70.3 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Leifsonia aquatica ATCC 14665 PATRIC: 1358026.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Leifsonia aquatica ATCC 14665 PATRIC: 1358026.3
[Ref.: #69480]	motile	yes	61.013	no
[Ref.: #69480]	gram-positive	yes	89.613	no
[Ref.: #69480]	anaerobic	no	99.685	no
[Ref.: #69480]	halophile	no	94.724	no
[Ref.: #69480]	spore-forming	no	88.26	no
[Ref.: #69480]	thermophile	no	99.451	yes
[Ref.: #69480]	glucose-util	yes	86.478	yes
[Ref.: #69480]	flagellated	no	94.016	no
[Ref.: #69480]	aerobic	yes	92.606	no
[Ref.: #69480]	glucose-ferment	no	89.592	yes

Availability in culture collections External links

[Ref.: #8570]

Culture collection no.

DSM 20146, ATCC 14665, NCIB 9460, CCUG 27700, CCTM La 2040, JCM 1368, BCRC 11574, CECT 535, CIP 64.13, IAM 12441, IFO 12154, IFO 15710, KCTC 9098, KCTC 9233, NBRC 12154, NBRC 15710, NCIMB 9460, NRIC 1848, VKM Ac-1400

[Ref.: #76789]

SI-ID 389265

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rudaibacter terrae gen. nov., sp. nov., isolated from greenhouse soil.	Kim SJ, Moon JY, Hamada M, Tamura T, Weon HY, Suzuki KI, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijs.0.049817-0	2013	*
Phylogeny	Leifsonia kribbensis sp. nov., isolated from soil.	Dastager SG, Lee JC, Ju YJ, Park DJ, Kim CJ	Int J Syst Evol Microbiol	10.1099/ijs.0.001925-0	2009	*
Phylogeny	Leifsonia poae gen. nov., sp. nov., isolated from nematode galls on Poa annua, and reclassification of 'Corynebacterium aquaticum' Leifson 1962 as Leifsonia aquatica (ex Leifson 1962) gen. nov., nom. rev., comb. nov. and Clavibacter xyli Davis et al. 1984 with two subspecies as Leifsonia xyli (Davis et al. 1984) gen. nov., comb. nov.	Evtushenko LI, Dorofeeva LV, Subbotin SA, Cole JR, Tiedje JM	Int J Syst Evol Microbiol	10.1099/00207713-50-1-371	2000	*
	Leifsonia gen. nov., a genus for 2,4-diaminobutyric acid-containing actinomycetes to accommodate "Corynebacterium aquaticum" Leifson 1962 and Clavibacter xyli subsp. cynodontis Davis et al. 1984.	Suzuki KI, Suzuki M, Sasaki J, Park YH, Komagata KK	J Gen Appl Microbiol	10.2323/jgam.45.253	1999	*

References

#8570

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20146

#18306

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#37611 ; Curators of the CIP;
#48900 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 27700

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#76789

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID389265.1 )

#116431 Collection of Institut Pasteur ; Curators of the CIP; CIP 64.13
* These data were automatically processed and therefore are not curated

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Leifsonia aquatica ATCC 14665

Leifsonia aquatica ATCC 14665

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